4f752b33d1ad112208968a5b25a6fc5a *DESCRIPTION
bd47dc4eb0aa04a9d554c3fede5e8c68 *NAMESPACE
7624c509cc3f0d6a692a82cb01a0f889 *NEWS.md
bcd1ad71fbbc2df19a1fda56fa955f94 *R/AllClasses.R
32f18a83779e80e8a889a8b4af1e58b2 *R/SeqBundles.R
7bcbabdadc4e1c86b5358fd6967b6747 *R/arc.R
070403569d8df1a099f9ac706c395ff2 *R/available.R
466f1d7a75a25081ec7d1b1b0466d66a *R/clustal.R
b4b6706dc9d9a8374bc02d500dc70290 *R/color_by_conservation.R
6a255e77aafc6bfa921764388e641d07 *R/color_else.R
13c3d1f0b26d72fb890270db214c0f02 *R/cons.R
963a371f44825f3b5cc6be2d30e3abce *R/facet_msa.R
97e741510eec7b8e8efc90d11bdb5f76 *R/geom_GC.R
377a63cd134b78da733bb140a3f92eb1 *R/geom_asterisk.R
383265a99bf95f62f831ad38342b7ca2 *R/geom_msa.R
1d1c34f970a0bcf295d6694ef43e6b73 *R/geom_msaBar.R
35fff5c712a4d9ca19eb3f06850cb953 *R/geom_seed.R
2d48fda0685a1dece7b6844f16e554d8 *R/ggmsa.R
05eb86636d0202ec0e0cdb770fbb0419 *R/import-functions.R
3bf0bed3141683c0eb2bc65be202d5f3 *R/method-plot.R
043c9361622945347593e8f7bbe1c897 *R/method-show.R
adc96b67e46f923629f3059bd445b363 *R/methods-diff.R
fa59dc81e0a4f4370c0652720483ae34 *R/methods-ggplot_add.R
08fa69969b673b026402dc290f2bc51b *R/msa_data.R
88936f9b303ef74dbc3071b2fb985e12 *R/prepare_fasta.R
cd65699dd50b41fda789eaec5afbf0e0 *R/seqdiff.R
c7d0210dd9e20fd8a554c3c600e00b5e *R/seqlogo.R
40786e3ee387d4f30b675fd98776cca7 *R/simplot.R
1312bf1d52fbeaabee714cde7a525a08 *R/sysdata.rda
f3739762757c17b1bf5b5781663abf2e *R/theme_msa.R
412c01d3372b97dbabe96a6d0ea21b28 *build/vignette.rds
96c4ea2ea9cdcf527deb530e9257bd0c *inst/doc/ggmsa.R
aefffdf0a44ae9f3903e62589fdcd299 *inst/doc/ggmsa.Rmd
74042d1c412b926b095db9beaf49d9b9 *inst/doc/ggmsa.html
d94b67942564712ea0dc655e6ceeec9f *inst/extdata/Cripavirus.fasta
d46d5ba53d2a3511b65a79e2f6635ad5 *inst/extdata/GVariation/A.Mont.fas
437ae9572cb3161f8bb4ea9ac59ccf66 *inst/extdata/GVariation/B.Oz.fas
011e3b9f9cb0a09da738e97e4bc3d6c0 *inst/extdata/GVariation/C.Wilga5.fas
d8b7a8e099688562ffa607afa0fd4ad2 *inst/extdata/GVariation/sample_alignment.fa
c0182cf537c609599cbf71ce23670608 *inst/extdata/Gram-negative_AKL.fasta
4766763d96e1e0ff55b1cc7b2900d4ae *inst/extdata/Gram-positive_AKL.fasta
283d3781ddd4ec3839743d1c13f11bce *inst/extdata/LeaderRepeat_All.fa
83c0d3f3b06dd3cbde5fd59388189042 *inst/extdata/Rfam/RF00458.fasta
4dbf1918d97f7dc999bff960dd77487d *inst/extdata/Rfam/RF03120.fasta
c659e072962d2ab1f396753764767d48 *inst/extdata/Rfam/RF03120_SS.txt
7b18b0240dc892042b9ee3eef87e31ce *inst/extdata/TP53_genes.xlsx
4d4900e66d223093ed5d8fcbd408ddf8 *inst/extdata/sample.fasta
cc4275de9362bd471e0fc02b9755d510 *inst/extdata/seedSample.fa
a332af24853c5ee0f7f84d2eda203337 *inst/extdata/sequence-link-tree.fasta
89165b84dada3df8702f1d0b4809e1da *inst/extdata/tp53.fa
cdd8b8083c37464cb7b0d382edc5f2bc *man/available_colors.Rd
2fdb554e400a6afdbd155281f5a96c5a *man/available_fonts.Rd
4904af525fe6e5fb0101c95c209d61de *man/available_msa.Rd
42b85d848fc3a3c96ba908ca60fc6e28 *man/color_Clustal.Rd
bc363601706273d5a9b87e094e261361 *man/color_scheme.Rd
576fd15e8e288f06044f6d8ee0d73fcd *man/facet_msa.Rd
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d3802154ff9646856565f0438a1b3ea0 *man/geom_GC.Rd
454c666f16fed0347718751c69904147 *man/geom_helix.Rd
793d6a1c33172b0d61303a409911eb0f *man/geom_msa.Rd
1be8329f6731a012d3d015459f2e615a *man/geom_msaBar.Rd
a3b9151316ffd2147c3ac50c6201b5c8 *man/geom_seed.Rd
618727d0e90fa5c20c45bc72521a172b *man/geom_seqlogo.Rd
63ca87703c2a2798d06645055b94a588 *man/get_consensus.Rd
3a0c1f485fe78ac7c49a57fac43bc2d9 *man/ggSeqBundle.Rd
2c7541772861ed1d747a0e549c0e8b91 *man/gghelix.Rd
3e98ada78108966072f6cc14afe9df20 *man/ggmsa.Rd
68f900af9ce9d26dfd387394133e1cb9 *man/msa2tidy.Rd
4751d14e0743bcc88913a8e5c9b1f8a7 *man/plot-methods.Rd
f266d9eca366ea5d4c524e66299dbf89 *man/readSSfile.Rd
b1f14c104b495a7c31f7b24a854bc2ff *man/seqdiff.Rd
930ba4657bd41a615c899ff80c07324c *man/seqlogo.Rd
f7327ea7e879c615c9522e2c954f7acb *man/show-methods.Rd
15df7a2edc4407f7e4ca5ca0844c5862 *man/simplot.Rd
618c409ea94a1cdc549fc1096ce3a304 *man/tidy_color.Rd
0e5da100bda907acb52c4d621287e579 *man/tidy_msa.Rd
de7d080267fecbb5892e173f90955c29 *vignettes/CONDUCT.md
aefffdf0a44ae9f3903e62589fdcd299 *vignettes/ggmsa.Rmd
5088a6efb7bd219ddc9c35b2abb378eb *vignettes/ggmsa.bib
9207cbe5509e9b592cc91c9de8a26f2b *vignettes/guides/Annotations.Rmd
736e59b23b4d7ff90998a1bd44a4d503 *vignettes/guides/Color_schemes_And_Font_Families.Rmd
8709f62e6e2bc0d66bb09d09325a6c62 *vignettes/guides/MSA_theme.Rmd
747760724a676577f5225796727092dc *vignettes/guides/Other_Modules.Rmd
02edf85df71a30d45f752d07e567d589 *vignettes/guides/View_modes.Rmd
984174170b02a9fdf7d4e9f6c03d2de0 *vignettes/man/figures/schemes.png
3734a7ebdaca5b9aa002158e4d8c9488 *vignettes/man/figures/workflow.png
