e8f13704123f1c9b9d83be945a34b126 *DESCRIPTION
983687fefac3ca7d49efda4fe5612f8d *NAMESPACE
55e049df5c290d42523e905fbe48815a *R/BCdata-class.R
0bcabcafeeb50fd424977b8b72463e25 *R/analysis_functions.R
7b821fb4bed597811b1589699acffea1 *R/data.R
1458997205f0325fe632ccfbd6aeffc1 *R/error_correction_function.R
2b573ee2b3fadd7b9d4e217ae5102e88 *R/helper_functions.R
fbe24d24db01f839c1e76c2bc3c642f8 *R/plot_functions.R
c9bb01cb466be22a4a811311d6331276 *R/raw_data_processing.R
10b5f3e143d5ec734bea0fe61cf27c10 *data/BC_dat.RData
c7fa1d8244f58ba57f4bdb34aa368353 *inst/extdata/knownBCs.txt
76e5b21df3192de7ca70982862a677cd *inst/extdata/test_BCs.csv
9d807cc586971abb4595d56963ed0df9 *inst/extdata/test_data.fastq
65870137ac0ddab9b7c0186f6f88df85 *inst/shiny_app/server.R
1cb717d7407f0b681f9d0a8bc7794e03 *inst/shiny_app/ui.R
04f777a73fce8ca9fa8e926706b1b5ef *man/BC_dat.Rd
496bc77b7ea6cf9bf3c715d67ddad8d4 *man/BCdat-class.Rd
b9a8980870a1f462216e66ea38802ca2 *man/asBCdat.Rd
4a86c8f1e4c178ae476b2205fe661206 *man/checkBarcodeData.Rd
e16bae944ab4375b4dcb79ba2064f122 *man/createGDF.Rd
7bf8a84784e23f4045a9aac06b57df5a *man/dot-createPatternFile.Rd
79765048870017516232e5efc6159c72 *man/dot-generateColors.Rd
65a1d7e8c90ecf411c296b4462573220 *man/dot-getBarcodeFilter.Rd
7f8d0e2b987fa9e88757097bd9bf20f7 *man/dot-getDiagonalIndex.Rd
00d5fd02763ccee2508f8dd09993b743 *man/dot-getMinDist.Rd
321a17eb65db885460d033ca3859bc25 *man/dot-getWobblePos.Rd
ad668590b33d26b67385246dd49e080f *man/dot-hex2rgbColor.Rd
b8caa49acc92a0736e7914da7b859a87 *man/dot-revComp.Rd
54a70abac9bbaff8d4a1e333447b3167 *man/dot-revComp_EqLength.Rd
0f1855f59d5041697d2c129c87309f6b *man/dot-revComp_UneqLength.Rd
124ae2716a68a52d3f3043b7772e63e9 *man/dot-testDirIdentifier.Rd
85c539d4173f66a8af0de1f9b679d305 *man/errorCorrection.Rd
2cba1ea15c1111cf0f5634f6eea1eb1b *man/error_correction_circlePlot.Rd
79f238b98c4a3a498b3ae6c5f33f3631 *man/error_correction_clustered_HDs.Rd
bc0e63c769b893cb9159008c11c0e478 *man/error_correction_treePlot.Rd
0019190f8e7fd38a375bd00273b84917 *man/extractBarcodes.Rd
db9eb22ffbafa8a528d8572049e1e5cf *man/genBaRcode_app.Rd
e6b57e1cd8516b9118b1954b2882b1ac *man/generateKirchenplot.Rd
c19c978adcfc7e6d31245f24daee3a9b *man/generateTimeSeriesData.Rd
e43fdf350fb123ee627c244d6317cc92 *man/getBackbone.Rd
08305a62ad487f6dcd3c9de3208cd52c *man/ggplotDistanceGraph.Rd
700c0d387f1fc29732ff858fce2201e5 *man/ggplotDistanceGraph_EC.Rd
ad446cc01df978dbade039009faf3c48 *man/hybridsIdentification.Rd
2cd136280c324afa065c9998a3d4de04 *man/plotClusterGgTree.Rd
ee6d89c893b4ecd675a8b96feb4c6954 *man/plotClusterTree.Rd
948e327572cde929935dbae3d57a6be8 *man/plotDistanceIgraph.Rd
b5e877811052d3052427bb24cb52095e *man/plotDistanceVisNetwork.Rd
f75151c56b938a0fb528b1d5517a2ecb *man/plotDistanceVisNetwork_EC.Rd
31bf116508e1e248770a83331b5ea853 *man/plotNucFrequency.Rd
5af3ba1f02ce1e97d02e2f82372efe97 *man/plotQualityScoreDis.Rd
a0f377fa6a69b1e5b01be61ef905abe1 *man/plotQualityScorePerCycle.Rd
398b2ac356616173da60863280cf5106 *man/plotReadFrequencies.Rd
e6f4ebe26e45e2f4699274b6fba7112c *man/plotSeqLogo.Rd
37e16501b13817ad5d61fb93374812e4 *man/plotTimeSeries.Rd
667bcdda8de4fb9cddaf0c822f192d71 *man/plotVennDiagram.Rd
cdc3be47c81b25c6262fa8f1fb7686f4 *man/prepareDatObject.Rd
7abe77b9481f822555c3885b22da7738 *man/processingRawData.Rd
5a92e3eabc186cbb9ceccd2c0def57aa *man/qualityFiltering.Rd
e558513b6b0d30d7716374d8dadbca75 *man/readBCdat.Rd
ef69a793aa50f8f3b517d7be85e1c871 *tests/testthat.R
710727d61d835cd1074ebed9b7bc6b2d *tests/testthat/test_get_wobble_pos.R
