Package: genBaRcode
Title: Analysis and Visualization Tools for Genetic Barcode Data
Version: 1.2.0
Author: Lars Thielecke <lars.thielecke@tu-dresden.de>
Maintainer: Lars Thielecke <lars.thielecke@tu-dresden.de>
Description: Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
Depends: R (>= 3.4)
License: LGPL
Encoding: UTF-8
LazyData: true
Suggests: testthat
Imports: methods, Biostrings, RColorBrewer, ShortRead, ape, ggnetwork,
        ggplot2, ggraph, igraph, network, phangorn, stringdist,
        visNetwork, reshape2, S4Vectors, shiny, ggseqlogo, ggtree,
        dplyr, VennDiagram, futile.logger, future, future.apply, tools
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-07-05 13:53:24 UTC; LT
Repository: CRAN
Date/Publication: 2019-07-08 16:10:03 UTC
