f58d3ef044147c09d6ec165a6b7a14b3 *DESCRIPTION
aa044d34afe3d3951a7ba21814cac245 *NAMESPACE
c32274b747a0f79e239cfb762bc823f9 *NEWS
de1696245d663f944ac85cb6db41de70 *R/bm.r
393f64351f12cffd3eee0ccdd9b33f62 *R/bm_as_bm.r
4ad5ea69b12e4c6ef73896f4318ba9a9 *R/bm_bind.r
f7c1d47b6d8c89595b0440e87eb56859 *R/bm_files.r
54f0dac3fb4997eb8292a3f66d4aba06 *R/bm_genomic_sex.r
6c9ce356eceea3ba9a52bda488ad98d0 *R/bm_grm.r
6a3d3ddad7e22ea0fd9d86b93fb74de1 *R/bm_hwe.r
406cc5a03cb4298b8350b8ca7e57e3df *R/bm_interface.r
e1c8b060f7d6fe0e44d079caa3aa57b9 *R/bm_ld.r
84add6cccae33179d3f7140fc716c002 *R/bm_ld_thinner.r
7a659f704748036f407068ada39f0f11 *R/bm_merge.r
68dc3f2191ef2106296bbe18719064d0 *R/bm_product.r
765c1e36d09b67b9a11ba80b8e5990be *R/bm_select.r
a187a0d4344e0119bbcb62e58d8e2baf *R/bm_stats.r
655221dd6a2bd19a0204bb2db658181b *R/bm_subsetting.r
7b6c18f32c06504e6f6db501fd2e7c31 *R/gwas.r
d9bb4417ae676ca14497f0c754b8d61f *R/ld_plot.r
6b3a7744cb2cd8b10a342e4cfb6544a1 *R/ld_plot_exemple.r
0512ed98107b5664b2513f1b1b0a018a *R/lik_contour.r
60cfa1a42913e14722244c48671abc7c *R/lmm_aireml.r
7a493ecc44748940c91d7d9b84c84313 *R/lmm_diago.r
0fb0f7222ab7a4a9252c94b7dbf609f1 *R/lmm_simu.r
42a9818d149f496c25b14ddcf29e30c5 *R/logistic_mm_aireml.r
6dbddbe2a33bcb1ed29d27969f5124f1 *R/random_pm.r
58a2ac37e8d193c94dc297c6ea56a7ba *R/score.r
382ba6b1b04203c7d662a40936baabc7 *R/zzz.r
62c2a3d546c9f8afcbb25d465c5729c6 *TODO
57a4709b04af572b2aa247788f858b75 *build/vignette.rds
3596d85a370f43e3e00ac131fbbbf95c *data/AGT.rda
34e12c308b68ce8e6ffaf071af82af7c *data/LCT.rda
28e30890deb426c070776d01a1320d49 *data/TTN.rda
abf8652f46e0022f2cd2b5ff8efd424c *data/datalist
8963b5199d49e7eaf6eb44a8cef9de03 *inst/doc/gaston.R
894adab7bb0ba07fcf0dd3e060894d70 *inst/doc/gaston.Rnw
74d2349dcae3b989bdd606b31871dd91 *inst/doc/gaston.pdf
12c31f58f990024d8b77c3b0c9dc86cc *inst/extdata/LCT.bed
2273b75e59551e464ae55f404d2887ac *inst/extdata/LCT.bim
3b1a418c594a35920264a5743580180f *inst/extdata/LCT.fam
91e0aa603c29eb463fe6dbefd9383834 *inst/extdata/LCT.rds
7f7054271ecd200b44f12eb8972c96cb *inst/extdata/LCT.vcf.gz
3ade457b2b3cdef6faaa05968fc49d42 *inst/extdata/LCT.vcf.gz.tbi
80c6a9e575bb3038aafd512a85290e08 *inst/extdata/chr2.bed
97078f282b05f0a6ae30948bcece2470 *inst/extdata/chr2.rds
1d858fed609a26fe339055ff358cdcfe *man/AGT.Rd
90e681cfc32f9e459261bc12448be134 *man/GRM.Rd
049f2b70cda2830f67e4d3440b0ce5fb *man/LCT.Rd
379c3c9cc71d6772b4e9e3b19e6547fd *man/LD.Rd
b7d65c241854d99c51ef457246437d99 *man/LD.plot.Rd
129172cd67a07e9589ff63ebb7ed3973 *man/LD.thin.Rd
9840358e0ade1e6ac512ed1377c8c77b *man/TTN.Rd
00d8064525f1cc07a3d1ce6fd4e73b86 *man/as.bed.matrix.Rd
4a03e94a1eb55e2f7586d9a82873a09b *man/association.test.Rd
b8b95a75ddfdae381405166a843d647a *man/bed.loadings.Rd
f49c3589a104631d3de5297cac8f621d *man/bed.matrix-class.Rd
f3a481f9b037894d68f166dda2e17b0d *man/gaston-package.Rd
5302caf1c06857c68b74bc3fa12da74c *man/is.autosome.Rd
cb91f55c7b6c8f11b4b43d7d239a494a *man/lik.contour.Rd
b32618d2d9607956ffaf69e94462006b *man/lmm.aireml.Rd
811802e52c9211190b823cc463212526 *man/lmm.diago.Rd
748264a1863d7d3208c0bf9ee8819ecb *man/lmm.diago.likelihood.Rd
e487ee7c96b2f9352bd9bab0527bb1a3 *man/lmm.simu.Rd
5062450a5a28428be1442a3bc2f934b4 *man/logistic.mm.aireml.Rd
04601d6eb9adc1d9e4c8470f0d3460e8 *man/random.pm.Rd
f0d0206d9f9b1c79ed5c5fce78c6c73c *man/read.bed.matrix.Rd
e9473e30c2ff59b0a7e799c1d80d9d7f *man/read.vcf.Rd
0abcea9ecf5eb5225f5e3d20bbc2f3fe *man/reshape.GRM.Rd
6a15a1682c303fb5083ce37dac0b5846 *man/score.fixed.Rd
981eb5f7ab89440fdf243985e9598a9f *man/score.variance.Rd
307918286d2a83e6d1f956b783a39c51 *man/select.inds.Rd
9cc8349825d82867388f85c888da912a *man/select.snps.Rd
9789cf44ddcecaad9df17d4b6ec24799 *man/set.genomic.sex.Rd
671cb542ef1024b8025dee620e60cb33 *man/set.hwe.Rd
37f701a7dbaa4a2f5fbcf2427834007d *man/set.stats.Rd
58bf377417a40c542664e8de3a560a21 *man/write.bed.matrix.Rd
81beb60f26a702e7dd487477a1b6328a *src/Makevars
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars.win
87f525033a8c73199e44c4da94a54db6 *src/ai-reml-1k-covar.h
c62f3cdb255c2a02a108a3205dbf445f *src/ai-reml-1k.h
efa061ffab10ac8aed1455aae92342b0 *src/ai-reml-logit-1k-covar.h
a839eff63039d1627799470495015f43 *src/ai-reml-logit-1k.h
b80ab6df2484794d3fe48747c22fb037 *src/ai-reml-logit-nk-covar.h
857a827f0639a5aee7be30fd68f32981 *src/ai-reml-logit-nk.h
71bb645770c1c002ec8595422d073545 *src/ai-reml-nk-covar.h
6ff1e50646f6573f6a8de97786526d40 *src/ai-reml-nk.h
7e9308cba5444ffe528eecc70d689fb2 *src/any.h
28b689c2e93135ba0f61b7ad28c508d5 *src/davies.c
24e963cbfab0941df5c412eb869a8865 *src/diago.h
bfb56da90ddb5a3773999eadbe0d34fd *src/diago_full.h
84ed11091277d557ae4ffa9eef95c3f4 *src/diago_full_nocovar.h
80a54435f25c29a47241733325a98ad2 *src/diago_nocovar.h
90252caad2215944096d77247aba815b *src/diago_wrapers.cpp
e64c89cb02ab43f8d95730c3f98bc79a *src/diago_wrapers.h
0e62f29818cd0de6db499adf432c9574 *src/export-aireml-1k.cpp
16eda4e91765e9fbc2d50d608798d953 *src/export-aireml-logit-1k.cpp
953b74db74a93a311eb7076441d170bf *src/export-aireml-logit-nk.cpp
4a207bb541281d771203daa64f2bb2f9 *src/export-aireml-nk.cpp
ba2b71aeb0fba4b14a6829bd763ba785 *src/gwas_lm_quanti.cpp
88c2fb722f4f77ab2da712f9245e7791 *src/gwas_lmm_diago_lrt.cpp
72d63b3195fcbb149e2f89c0722bb58f *src/gwas_lmm_diago_lrt_mt.cpp
5545b606a94efad58984df9c40906bd2 *src/gwas_lmm_diago_wald.cpp
958828e83257aa39a7812742f622ee7f *src/gwas_lmm_diago_wald_mt.cpp
ec7b3eaafc29ee074c212afcb3049b0f *src/gwas_lmm_score.cpp
599456c13a04482724b77500c2085e67 *src/hwe.cpp
eae04c0f6a28040448ae30dcab55af52 *src/hwe_chi.cpp
2b39e959a989f84c56318ba1897b7229 *src/isnullptr.cpp
ffdad0b18533e596034a4c8345f3a474 *src/lmm_diago.cpp
811d592e71dfdabafabecb76a14e4b1a *src/lmm_diago_full.cpp
fa9c3e84bdba664ee156a637efddb6a9 *src/lmm_diago_nocovar.cpp
e085288dc7c7b0f0f9621658a441ba99 *src/loubar.cpp
f4c8c19e8744439274e95e55a58a7168 *src/loubar.h
2b86accabb535321b0d2190ce64ebf3d *src/m4_bed.cpp
6fa444d58421026fd124d3d38830120d *src/m4_bind_inds.cpp
ca518453f7274adfe90446df16a6be01 *src/m4_bind_snps.cpp
79b271d525ceb558eb1cd23714a189a6 *src/m4_conversion.cpp
26132f31bc8a5ac45df90f06a97f2598 *src/m4_dims.cpp
66e5154e20098e447f1eecbea3d006a9 *src/m4_exports.cpp
add3241ccec1f7d1b12a9593c875c2ac *src/m4_extractind.cpp
0580d39e033d34b6cf0be91cb6d14c53 *src/m4_extractsnp.cpp
78fa9f5a962c0fef42924503f61759d3 *src/m4_kinship.cpp
eddf6e857338b0fa098b2a578c32bbd3 *src/m4_kinship_p.cpp
e97ca4a5e03feb338b8bd9de381ed698 *src/m4_kinship_type.h
d59ca25223bf6ac4ff1a656650d929c1 *src/m4_ld.cpp
c16acf43153a95c43c0fae22bceaf743 *src/m4_ld.h
993dc08d8fa6735d5ee802e3b70dd2ea *src/m4_ldp.cpp
1b249cd98d2a5b8d397a1506d8683ea6 *src/m4_ldthin_left.cpp
1eca108c0a249bc2e69b87ca251d0632 *src/m4_ldthin_random.cpp
918b7ab345eb45166ced30136f2f0f1e *src/m4_ldthin_right.cpp
c580bcc45cae89d59c462cb0c1e6b4e0 *src/m4_prod2_ms.cpp
53a49d588502a546b7cb78d555252810 *src/m4_prod2_p.cpp
11b9b5a4d0de9a0287539df71046dac5 *src/m4_prod_ms.cpp
3a957fa4e9a9f9386f3b2e261f87e47e *src/m4_prod_p.cpp
b2e515761c390760560f49b17ebc753a *src/m4_read_vcf.cpp
dad3b3b6c0abdfa653f7860aac22093a *src/m4_recode.cpp
2e9ff0f871a71b4c392c3cb806e455da *src/m4_stats.cpp
5dac904d5ac666a2279ac48d5aa31a9f *src/m4_transpose.cpp
ccab8c57f41ddaf1031a1336c3552319 *src/matrix-varia.cpp
16a2354bdbc53c5cb097441e152a56c2 *src/matrix-varia.h
a0c992bc845b06e8cb9ecd588fa02bec *src/matrix4.cpp
c65980d11c91d82039629e9de907555f *src/matrix4.h
769947a5866968d0e172a4a3f94d93e7 *src/optimize.cpp
286b84892034eb44b0bb5f0f2a2de4c6 *src/optimize.h
e6092bb5851fb0917c0c2f94bbe00e99 *vignettes/gaston-015.pdf
3236dd86250750d05ef8a98a5d4fd47d *vignettes/gaston-016.pdf
4ea89399fff71fced94011d820f0afbe *vignettes/gaston-026.pdf
fe80636c8fffeb110e58bef771592b26 *vignettes/gaston-028.pdf
12327ecc06f3a6fff676fad6e26f70e1 *vignettes/gaston-029.pdf
68f7ee66a2361c2fa09caa50c15b32d7 *vignettes/gaston-030.pdf
f16587ea70e1608237828322b30ae64c *vignettes/gaston-033.pdf
48543d5b0b68a5dfe4b2e73bc842325a *vignettes/gaston-037.pdf
04644942ad45917637694f1f5f2a4f65 *vignettes/gaston-039.pdf
1ca12f58b2d7806b4b8b994ad971a276 *vignettes/gaston-040.pdf
8665ec9aee3a714469b63329c1846463 *vignettes/gaston-041.pdf
e032d2259914cf38a7cfa778f1249fe3 *vignettes/gaston-042.pdf
2c40554d02b21903ef75031898db564b *vignettes/gaston-044.pdf
3117a22a680f057d8f938f94a38b58fc *vignettes/gaston-048.pdf
d6309d883f9f249f211a4845935da9d3 *vignettes/gaston-052.pdf
00445433e0e8dea141ff2384695850fb *vignettes/gaston-053.pdf
a688edd0be1180f822b08c59ceee0628 *vignettes/gaston-054.pdf
3dac48c0ee944ade7e1ac1f00fb21a52 *vignettes/gaston-055.pdf
ea8636f028de6cf5fb63b7e65c542a28 *vignettes/gaston-056.pdf
894adab7bb0ba07fcf0dd3e060894d70 *vignettes/gaston.Rnw
