114577af90a7ac08b8e79ef04880e6a0 *DESCRIPTION
721a4ea59af0c301b11478391fd539ed *NAMESPACE
236fb042ce9371614d9eec8cfec3d016 *NEWS.md
107103fe292ec13b52eaf47ae50cb95c *R/AA2Binary.R
160f98814cde409b45d810d04eeaa4e4 *R/AAKpartComposition.R
c8e7bef30e1ce2dc3b7dc307dd4d2b9f *R/AAindex.R
6ae545cdcade892bc01c3454b1470417 *R/AAutoCor.R
f84a2a78c69c88d2732d9dbb7ba791c1 *R/ANF_DNA.R
a0d5a51fe3bb56f1620ee3a7f8f7f783 *R/ANF_RNA.R
fe78ce09fb590241eb5a31cf4322ef1c *R/APAAC.R
5558687a7919167d454a1924e591d5aa *R/APkNUCTri_DNA.R
a6b509b76ebd7b43bb249870459fcb50 *R/APkNUCdi_DNA.R
b7b40a0ef178e069dda74253246be290 *R/APkNUCdi_RNA.R
c81ff3865a7f4c461757ea14ce4fa9e5 *R/ASA.R
9c380e589a51b49b0644ef11de2188ec *R/AutoCorDiNUC_DNA.R
f2e4aff295d49ea1ca6b623e45cdc43c *R/AutoCorDiNUC_RNA.R
a379be4ff1066732f06bcfd7cfe930af *R/AutoCorTriNUC_DNA.R
8684d5e26c8413f8d625d32ea5d5c8af *R/Blosum62.R
74e4cb0334208e05fbeba4f26dabe12e *R/CTD.R
b82d13ba2fcb3b181fb8af85bf1b5426 *R/CTDC.R
2741e91006e6b5a3b3c5f8593e1617fa *R/CTDD.R
9d5cb495c2acd28dc2212f252635ee38 *R/CTDT.R
15b97e2937b5005d19337151bc99acb2 *R/CkSAApair.R
01692ef99227be67b4700194ec959c01 *R/CkSGAApair.R
4577b6d2a3246f308b00a8ea08b61de1 *R/CkSNUCpair_DNA.R
69c9f1522eac7fc5dddef084d17af3d5 *R/CkSNUCpair_RNA.R
6a41f3f445c5d3ac515734dfa08d504c *R/CodonFraction.R
38b52342a124d4f45f93dce12198b0b1 *R/CodonUsage_DNA.R
906dfcf90a2c45b733c04a3a3d95d643 *R/CodonUsage_RNA.R
83cc31e4c237e3e1eabb7bc87b30e565 *R/DDE.R
74b7ef7375a3163667b4aa5225944730 *R/DiNUC2Binary_DNA.R
34e52c4a777d50b5c68004e72d8645fa *R/DiNUC2Binary_RNA.R
13274ebd70505a08faf30ef6bd22deee *R/DiNUCindex_DNA.R
89bbfc018eda7af63098a2be0f6fbef8 *R/DiNUCindex_RNA.R
0cb62212410748564d94c19da87bc737 *R/DisorderB.R
cebff763a3bc3e9a7d4cdc1757ce978e *R/DisorderC.R
ba0e13468e33ee89ffc5fef9c84d1015 *R/DisorderS.R
7a4d30cac86cec25f8b3766b3ed7105b *R/EAAComposition.R
bbfef2f8d928ed355678c16bf6054a75 *R/EGAAComposition.R
5181c36f9ee44d68d2958fc61eb65e99 *R/EIIP.R
3cedbd3e7bc3067e36d98c01f5bfcf36 *R/ENUComposition_DNA.R
eea87c8d86edc625d60d10e6798369fa *R/ENUComposition_RNA.R
0e0a399ae07849139dd23719c809c8db *R/EffectiveNumberOfCodon.R
d10726c7de83d413043e2ce4c808e4f7 *R/ExpectedValKmerNUC_DNA.R
f7255ec8f82a118be82a61bc38d5403f *R/ExpectedValKmerNUC_RNA.R
3a0deed642d75adde215afeeb7e47013 *R/ExpectedValueAA.R
c6c14ef010d16d811939006efda10c3b *R/ExpectedValueGAA.R
62a85f7502e08eb97f9b567027f5a915 *R/ExpectedValueGKmerAA.R
330ba156e4a723ae53359ce1e66d5e73 *R/ExpectedValueKmerAA.R
ebac234650fb8e689bf497b93907a0f0 *R/GAAKpartComposition.R
d45cd3c16825883ac47cdf4480554c72 *R/G_Ccontent_DNA.R
fb0abc9ae20dea2d336ac78c27c8223d *R/G_Ccontent_RNA.R
099526daac23cd440e730cbdb523515d *R/GrpDDE.R
8b931ea893b14d5ef8f88df24b8e0304 *R/KNNPeptide.R
42f3d22dc22419353253bed7dbf77e0c *R/KNNProtein.R
0c086fb2eab2e68af91843da20dceea1 *R/LocalPoSpKAAF.R
6fe544680f91f7a7ac2e11667fb30add *R/LocalPoSpKNUCF_DNA.R
b5f9b8eb80df1b3e60a63f543bd6f675 *R/LocalPoSpKNUCF_RNA.R
62312b1fc52aaaddeafa5b7fbb5a676a *R/NCP_DNA.R
0a1c7549ed356fdb05d7164d0a09fd09 *R/NCP_RNA.R
015c15af190f1a65b5dcc5d9985af282 *R/NUC2Binary_DNA.R
3a21101e574a342d42ae508357842c74 *R/NUC2Binary_RNA.R
065ef55d46ba325272be33c29113748d *R/NUCKpartComposition_DNA.R
7c85f7f8d42346de8e929e9585b9be99 *R/NUCKpartComposition_RNA.R
59c9df4db3e65b00e6b5d5174c02b0b0 *R/PCPseDNC.R
929c6294e5e1ea543185bfa7b0526ffc *R/PSEAAC.R
3a0d2730238d83c0a0023f0ee1c464e4 *R/PSEkNUCTri_DNA.R
0e89deb4c54184fe6233500881e7f13d *R/PSEkNUCdi_DNA.R
60690d76c7f72efe923a0dfb082a5547 *R/PSEkNUCdi_RNA.R
89138e5537db14be342803c831a00824 *R/PSSM.R
9f8f7c3cb109f68ae686ec3c04575f1b *R/PSTNPds.R
63cb55e8547471056fb6725f517d4cf3 *R/PSTNPss_DNA.R
1e5f17d8d495eb548755801d0b21ffbb *R/PSTNPss_RNA.R
bda0c3aa5e42fadde76fa459ef5ad096 *R/PseEIIP.R
226eeb88b2cd4b70a521c047a2accbad *R/PseKRAAC_T1.R
33d6bdc7ed88aa4163a68f1b1c4cbd34 *R/PseKRAAC_T10.R
ff95e6f158f5fc30262af521986381ec *R/PseKRAAC_T11.R
6cd97e4a293a70c0c4fd298e27a8368c *R/PseKRAAC_T12.R
99db4fe84aab55a9a194124853ca6b2f *R/PseKRAAC_T13.R
fd80865c9942ba17b5db4f9f5e77f909 *R/PseKRAAC_T14.R
b6ecfa2f02856abbd47db6524e5f4b1c *R/PseKRAAC_T15.R
8bdfe80d7c9ba97405738c76357ea24e *R/PseKRAAC_T16.R
bb1bbc6080a9bd41712b829b54c422b3 *R/PseKRAAC_T2.R
1f3a8b81acfe929a85f1c1c476b0a9e7 *R/PseKRAAC_T3A.R
17c1f179239296af355d863318b0adb1 *R/PseKRAAC_T3B.R
2b88071c97d96397d6372905d073af01 *R/PseKRAAC_T4.R
a6f5b99a3d0ea2e104c4d54c3a1c7e20 *R/PseKRAAC_T5.R
af82366cf118d3a31d7f40b73ac5a70e *R/PseKRAAC_T6A.R
cfdbbcdfdef79c290c729fc34c32f7f6 *R/PseKRAAC_T6B.R
3d5e9d01a26c240dfb0260ebf25f1efe *R/PseKRAAC_T7.R
9ca5eaf8503b8babe6321560a2235644 *R/PseKRAAC_T8.R
d4e7d316de28b909497b178ffac35d91 *R/PseKRAAC_T9.R
1f5dd04248445241d79527b6afe2323b *R/QSOrder.R
f4661e02fe50888e05d79ba69bcad706 *R/SAAC.R
587e7a5cab18e6c7947da92974a2fa38 *R/SGAAC.R
05978293c050046567370934b63bb297 *R/SOCNumber.R
dc2705da61be7ae1895afd49b984a1da *R/SSEB.R
567674d66c69d6e8917a7d3a399f0c13 *R/SSEC.R
6642feddf61a94a1a176b6c6b830d3e5 *R/SSES.R
6ac378510ab1ac2bec367c47e945512d *R/TorsionAngle.R
d1744bf2019406eed5f1065a7c452db0 *R/TriNUCindex_DNA.R
86e89e68b0b163106d5f44e67d59305a *R/alphabetCheck.R
cc743358665ef279a917330cd94fa0be *R/codonAdaptionIndex.R
66ada416caa2966527be34ef8474ec88 *R/conjointTrKS.R
efabf39b7df0a084fa1e55d7b609ffc2 *R/conjointTriad.R
043fb6861b49f5d82b757f063cc32913 *R/fa.read.R
4a778e0c74c5c92e1b498cfd67a0cdb3 *R/fickettScore.R
2e14678c372ed7212e3750afe7b3fe19 *R/kAAComposition.R
6772ff8592a44e06d0599f4b745344d0 *R/kGAAComposition.R
7b6cfd611389f59ebc7f4ee2b9f2a873 *R/kNUComposition_DNA.R
483b73acb1c79300a5296038e2c6fd5a *R/kNUComposition_RNA.R
fd1d5c223e591480ae046d4ce2c58d0c *R/maxORF.R
96f8e4770a81247e0f94178a66ab03c0 *R/maxORF_RNA.R
4ab154b27a65461d2222967c248e6a24 *R/maxORFlength_DNA.R
80c3cf85a4f3357c8497eefb15a68561 *R/maxORFlength_RNA.R
7db44a41b28221bac2a2a0a6ebf86e58 *R/nameKmer.R
2b32a046316e5637e62b91d67e0ea0c5 *R/needleman.R
ab5b627b11164201bb789cc048c5f6f5 *R/nonStandardSeq.R
16d48cb31e1229f9cad8e1a5d1f771fb *R/readASAdir.R
12da3ba81e5b3aeb201d76a2cb7a228f *R/readDisDir.R
23af25c35a00642d7fe20903f987f3e2 *R/readPSSMdir.R
8342e6f5ed1d6274765458f9f115fb3d *R/readTorsionDir.R
9e5fb54b33b222b6d381f6fa7be4b4b8 *R/readss2Dir.R
e7ba6d06db3a505131ffe6c4d5b3649b *R/revComp.R
ef7039e94546bf8c6bac52f0025523f1 *R/zSCALE.R
8a3c44c5acebe1c6f7e79ae2d23743aa *inst/extdata/Athaliana1.fa
e1f3df571480a8e31c309fbab5e0c093 *inst/extdata/Athaliana_LNCRNA.fa
aed4ee00bca5c2398345a4a0b59c7dd7 *inst/extdata/BLOSUM62.csv
a31de8f53d09cfe695a54d332f3e84e3 *inst/extdata/Carica_papaya101RNA.txt
41371e53fbc851454b7aff6b4af2791e *inst/extdata/Carica_papaya101RNATotal.txt
777d947ccc03a480ad464b85c974cce4 *inst/extdata/DI_DNA.csv
1a87782cfc555c9e37acaf427ab78307 *inst/extdata/DI_RNA.csv
486c7ba62e7b7838790cf8d11b518265 *inst/extdata/DNA_testing.txt
af9d5261c7ef5eb3ce8478b93f06b178 *inst/extdata/Grantham.txt
70d95d64674e95e550a1961de89040db *inst/extdata/LNC50Nuc.csv
28b5bb413f4ea893fd1f69a5afce6d9f *inst/extdata/Schneider-Wrede.txt
5fac7904560456fc18ff37d701d502e9 *inst/extdata/TRI_DNA.csv
9c8a6c963636ac171710a10faa4720aa *inst/extdata/aaIndexcleaned_555.csv
5d569bc8d73978cab74251a48b16a97e *inst/extdata/eiip.csv
aae5b1272663bfb326668af258ae75cc *inst/extdata/ncp.csv
3b02a11f5dc9881b879ae338270d1796 *inst/extdata/neg2RNA.txt
579d1d80e255c05725d63aa3c7cfcd4e *inst/extdata/negDNA.txt
f0ee66a5bf8500d9084d71f57c88e532 *inst/extdata/negData.txt
c25a2d5d48230180ddf675603d4596aa *inst/extdata/negSeqPTM101.csv
96bae3e0dd86771fe8988d8dfff5f16f *inst/extdata/poSeqPTM101.csv
3135c46f966dbac61ee4f06c600f729d *inst/extdata/pos2RNA.txt
352ed27c6100f8d0770c9717d77d51e5 *inst/extdata/posDNA.txt
8a08d9e5e9da07f3518bd22ffe440d8e *inst/extdata/posData.txt
7a16a4671f9993bb298afa86428132a3 *inst/extdata/protein.fasta
abcb1ea023cab578873c67ee17a8ab6c *inst/extdata/proteins.fasta
98506cc50bcefca0b8d3e19263700f9d *inst/extdata/ptmVect101AA.csv
ee475409876296d17be0d9e5a899236d *inst/extdata/standardizedAAindex_555.csv
7f81f20f28eeef80192cf851dfeeb61d *inst/extdata/testData.txt
c10b3015befa2f6ed5991bd228985689 *inst/extdata/testSeq2RNA.txt
1ebc1ca797e6a1a862551d9fe544f262 *inst/extdata/zScale.csv
34bf8524696a709e2ec679c25cee3071 *inst/testForder/ASAdir/P31946.spXout
064f5fc99bdb725293de4499a2ac7830 *inst/testForder/ASAdir/P31947.spXout
161696885aa45df7f0d13ce6e7a0ab19 *inst/testForder/ASAdir/P61981.spXout
d5b2eb08735fa8c86c5f6e87912691dc *inst/testForder/ASAdir/P62258.spXout
f0078fa103694489d578c11d71bc5589 *inst/testForder/ASAdir/Q04917.spXout
3a7b8b976663315faee7e3147e29c23f *inst/testForder/Disdir/P31946.dis
f41a773d7c107f699afeccf90e8c0b8d *inst/testForder/Disdir/P31947.dis
ca01382de409589222768ee46eeccff2 *inst/testForder/Disdir/P61981.dis
eda862a3bbb5c8bc8f0bfc608320ba8b *inst/testForder/Disdir/P62258.dis
c3a4ab3efa55d7f2581890397980f97f *inst/testForder/Disdir/Q04917.dis
ec540ad7d91accfc56ee3065fd9d197c *inst/testForder/PSSMdir/P31946.pssm
cfed5b3da13ba93b0f2e585a71e9b71a *inst/testForder/PSSMdir/P31947.pssm
cafe85435f0496843568bd9da2ea588d *inst/testForder/PSSMdir/P61981.pssm
b8106ef2d07bc029a1ab74b50fa9bc50 *inst/testForder/PSSMdir/P62258.pssm
b7533a49ba7b9bceebed9a07dfe47dfe *inst/testForder/PSSMdir/Q04917.pssm
34bf8524696a709e2ec679c25cee3071 *inst/testForder/TorsioNdir/P31946.spXout
064f5fc99bdb725293de4499a2ac7830 *inst/testForder/TorsioNdir/P31947.spXout
161696885aa45df7f0d13ce6e7a0ab19 *inst/testForder/TorsioNdir/P61981.spXout
d5b2eb08735fa8c86c5f6e87912691dc *inst/testForder/TorsioNdir/P62258.spXout
f0078fa103694489d578c11d71bc5589 *inst/testForder/TorsioNdir/Q04917.spXout
ac198a77c928e1f50e4882268bab9dca *inst/testForder/ss2Dir/P31946.ss2
037d74584e71cbd746bf18111ae04521 *inst/testForder/ss2Dir/P31947.ss2
e9dc7de56adf17539741c7918419f747 *inst/testForder/ss2Dir/P61981.ss2
9994ff16c513d7ea0fff2c4e94d6c829 *inst/testForder/ss2Dir/P62258.ss2
909f0e8ac17edae9d0138abbf4d1e48e *inst/testForder/ss2Dir/Q04917.ss2
34bf8524696a709e2ec679c25cee3071 *inst/testForder/test_ASA/P31946.spXout
34bf8524696a709e2ec679c25cee3071 *inst/testForder/test_ASA/P31946_2.spXout
3a7b8b976663315faee7e3147e29c23f *inst/testForder/test_Dis/P31946.dis
3a7b8b976663315faee7e3147e29c23f *inst/testForder/test_Dis/P31946_2.dis
ec540ad7d91accfc56ee3065fd9d197c *inst/testForder/test_PSSM/P31946.pssm
ec540ad7d91accfc56ee3065fd9d197c *inst/testForder/test_PSSM/P31946_2.pssm
34bf8524696a709e2ec679c25cee3071 *inst/testForder/test_Torsion/P31946.spXout
34bf8524696a709e2ec679c25cee3071 *inst/testForder/test_Torsion/P31946_2.spXout
ac198a77c928e1f50e4882268bab9dca *inst/testForder/test_ss2/P31946.ss2
ac198a77c928e1f50e4882268bab9dca *inst/testForder/test_ss2/P31946_2.ss2
c63b32f18712cad6544abee4bd4d2cdf *man/AA2Binary.Rd
9c88a41f36f913917b52bd426811ae0b *man/AAKpartComposition.Rd
796f69cf29c340f196283968974b6056 *man/AAindex.Rd
f3d9f93efd8d5d675cc47096c2c61b76 *man/AAutoCor.Rd
ab65671936182a86d82113f566d9e87a *man/ANF_DNA.Rd
679e46ba9bc1238e48ca27634e8cec07 *man/ANF_RNA.Rd
9f6633012b900aa7cde6c77ac28d5d4f *man/APAAC.Rd
1bf3418d67541976aa3df852815d3686 *man/APkNUCTri_DNA.Rd
5f78cfdb04086ec006724a1d0b60ba83 *man/APkNUCdi_DNA.Rd
46cd77d1b554b5d8650ac44c147b737f *man/APkNUCdi_RNA.Rd
492381b8b55b1915327796bf3dab6137 *man/ASA.Rd
48a185aa5ae24058b4b072823e76c427 *man/AutoCorDiNUC_DNA.Rd
ee65455bb014e373a000af248f597966 *man/AutoCorDiNUC_RNA.Rd
593e8775adedcb15badf8f585d848b26 *man/AutoCorTriNUC_DNA.Rd
265efa4723bf698f99cc2777291910fb *man/BLOSUM62.Rd
2b141e3e9431b6b78f5caa1007f0e249 *man/CTD.Rd
628f082816faa82430fa01ee2e45a18b *man/CTDC.Rd
3f354bd256ddf137639389eb455c7d69 *man/CTDD.Rd
df210d7808fdcdd778f2b2ec82e0fd10 *man/CTDT.Rd
e40b058980efe146b2ed67520f362148 *man/CkSAApair.Rd
955217b35385ca1138604baa038efaa8 *man/CkSGAApair.Rd
4a86ebee38b7b95205b5ad1871356998 *man/CkSNUCpair_DNA.Rd
190573e44844b2daf140bf25f25a4adc *man/CkSNUCpair_RNA.Rd
97f344be085d8dcdc80fb3d53f228eb3 *man/CodonFraction.Rd
13a0a8af2a31a0c57a860c83ee6d2315 *man/CodonUsage_DNA.Rd
69a53d9deb2de3b1fa763ef6c44ff3d9 *man/CodonUsage_RNA.Rd
a563a9a2637e61bb26b9dc12be97a315 *man/DDE.Rd
70841525a55611d9551595cce80e0161 *man/DiNUC2Binary_DNA.Rd
008e6cd64a897831b92c1c01e18233ea *man/DiNUC2Binary_RNA.Rd
bd43c497ff2d43bef8aaa1c374fb283a *man/DiNUCindex_DNA.Rd
3d013a11cc6960ce50cdde110a2b38d8 *man/DiNUCindex_RNA.Rd
b4c08ba7d93c736c27b8a00b6b862d8a *man/DisorderB.Rd
ffe6bf394c8e44058c54dd5b2609a6f1 *man/DisorderC.Rd
8ab6ace0392af46d6752fbbeffbf8314 *man/DisorderS.Rd
bf969ac143cfd7a403391692c337eb3b *man/EAAComposition.Rd
7e5d26b088dc28f313a7a184c020edfa *man/EGAAComposition.Rd
d38cc253f7d8d1302c65d406af4233ad *man/EIIP.Rd
d2ca95847c598ac84652c48093c1a192 *man/ENUComposition_DNA.Rd
1a1b173d9431c75e027ab971c6bca5c8 *man/ENUComposition_RNA.Rd
2ae963ca67e6eab448a75c95ba14c2c6 *man/EffectiveNumberCodon.Rd
dd495259c5c0fc2a39c72210b2b0bde3 *man/ExpectedValKmerNUC_DNA.Rd
0d72d3baeef2d4fef5678b848e107548 *man/ExpectedValKmerNUC_RNA.Rd
48255b57d4e31e0c4d2166f62f4ddbfa *man/ExpectedValueAA.Rd
dac587d02da6f22f6e7d914a59c87996 *man/ExpectedValueGAA.Rd
b12aa6241bb8a1ee7288299bb57dc5d2 *man/ExpectedValueGKmerAA.Rd
93bd4c57f72478f6a3e7f2d2261d06fa *man/ExpectedValueKmerAA.Rd
ddd6e94eaf7ee4cc37e10fa18e6e4ff2 *man/GAAKpartComposition.Rd
faee8d7776768911b215c50e739f1927 *man/G_Ccontent_DNA.Rd
0fe71fca23860527546c8f96b24325b7 *man/G_Ccontent_RNA.Rd
264e3770cbd09ed32669dadba201fa32 *man/GrpDDE.Rd
5101b4a164a76fe0dacd4e9a1d60d682 *man/KNNPeptide.Rd
5a783fc3e591156aa20e5a93b75bd952 *man/KNNProtein.Rd
6f52abc992e92a57f338d5350db7c12f *man/LocalPoSpKAAF.Rd
f0fab4a96b3a584312b8c1e6f5c69b02 *man/LocalPoSpKNUCF_DNA.Rd
b67179bd469186e6d78d55289beccfe9 *man/LocalPoSpKNUCF_RNA.Rd
7569c99f62ed9c4aa6362b85c6e94c74 *man/NCP_DNA.Rd
592b4a7977a680cdb632a9050f48374c *man/NCP_RNA.Rd
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