importFrom("ade4", "originality")
importFrom("ape", "as.hclust.phylo", "as.phylo.hclust", "as.phylo.phylog", "branching.times", "drop.tip", "is.ultrametric")
importFrom("EntropyEstimation", "Entropy.z", "GenSimp.z", "Tsallis.z")
importFrom("geiger", "tips")
importFrom("graphics", "abline", "axis", "axTicks", "barplot", "box", "legend", "lines", "par", "plot", "polygon", "rect")
importFrom("grDevices", "palette", "rainbow")
importFrom("parallel", "mclapply")
importFrom("stats", "cutree", "dbinom", "density", "ecdf", "hclust", "integrate", "lm", "optim", "optimize", "pnorm", "qnorm", "quantile", "rlnorm", "rmultinom", "runif", "sd", "uniroot", "var")
importFrom("utils", "head", "setTxtProgressBar", "txtProgressBar")
importFrom("vegan", "fisher.alpha")
export(AbdFreqCount)
export(AllenH)
export(AlphaDiversity)
export(AlphaEntropy)
export(as.AbdVector)
export(as.CommunityProfile)
export(as.ProbaVector)
export(as.SimTest)
export(as.SpeciesDistribution)
export(bcDiversity)
export(bcDqz)
export(bcGenSimpson)
export(bcGenSimpsonD)
export(bcHqz)
export(bcHqzBeta)
export(bcHurlbert)
export(bcHurlbertD)
export(bcPhyloBetaEntropy)
export(bcPhyloDiversity)
export(bcPhyloEntropy)
export(bcRao)
export(bcRichness)
export(bcShannon)
export(bcShannonBeta)
export(bcSimpson)
export(bcSimpsonBeta)
export(bcTsallis)
export(bcTsallisBeta)
export(BetaDiversity)
export(BetaEntropy)
export(CEnvelope)
export(ChaoPD)
export(CommunityProfile)
export(Coverage)
export(Diversity)
export(DivEst)
export(DivPart)
export(DivProfile)
export(Dqz)
export(Enq)
export(EntropyCI)
export(expq)
export(expq.CommunityProfile)
export(GammaDiversity)
export(GammaEntropy)
export(GenSimpson)
export(GenSimpsonD)
export(Hqz)
export(HqzBeta)
export(Hurlbert)
export(HurlbertD)
export(is.AbdVector)
export(is.CommunityProfile)
export(is.DivEst)
export(is.DivPart)
export(is.DivProfile)
export(is.MCdiversity)
export(is.MCentropy)
export(is.MetaCommunity)
export(is.PhyloDiversity)
export(is.PhyloEntropy)
export(is.PhyloValue)
export(is.PPtree)
export(is.ProbaVector)
export(is.SimTest)
export(is.SpeciesDistribution)
export(KLq)
export(lnq)
export(lnq.CommunityProfile)
export(mergeandlabel)
export(MergeC)
export(MergeMC)
export(MetaCommunity)
export(Optimal.Similarity)
export(PDFD)
export(PhyloApply)
export(PhyloBetaEntropy)
export(PhyloDiversity)
export(PhyloEntropy)
export(Preprocess.MC)
export(Preprocess.Tree)
export(Rao)
export(rCommunity)
export(Richness)
export(Shannon)
export(ShannonBeta)
export(Simpson)
export(SimpsonBeta)
export(ShuffleMC)
export(Tsallis)
export(TsallisBeta)
S3method(as.AbdVector, data.frame)
S3method(as.AbdVector, integer)
S3method(as.AbdVector, numeric)
S3method(as.ProbaVector, data.frame)
S3method(as.ProbaVector, integer)
S3method(as.ProbaVector, numeric)
S3method(as.SpeciesDistribution, data.frame)
S3method(as.SpeciesDistribution, integer)
S3method(as.SpeciesDistribution, numeric)
S3method(Diversity, ProbaVector)
S3method(Diversity, AbdVector)
S3method(Diversity, integer)
S3method(Diversity, numeric)
S3method(Dqz, ProbaVector)
S3method(Dqz, AbdVector)
S3method(Dqz, integer)
S3method(Dqz, numeric)
S3method(GenSimpson, ProbaVector)
S3method(GenSimpson, AbdVector)
S3method(GenSimpson, integer)
S3method(GenSimpson, numeric)
S3method(GenSimpsonD, ProbaVector)
S3method(GenSimpsonD, AbdVector)
S3method(GenSimpsonD, integer)
S3method(GenSimpsonD, numeric)
S3method(Hqz, ProbaVector)
S3method(Hqz, AbdVector)
S3method(Hqz, integer)
S3method(Hqz, numeric)
S3method(HqzBeta, ProbaVector)
S3method(HqzBeta, AbdVector)
S3method(HqzBeta, integer)
S3method(HqzBeta, numeric)
S3method(Hurlbert, ProbaVector)
S3method(Hurlbert, AbdVector)
S3method(Hurlbert, integer)
S3method(Hurlbert, numeric)
S3method(HurlbertD, ProbaVector)
S3method(HurlbertD, AbdVector)
S3method(HurlbertD, integer)
S3method(HurlbertD, numeric)
S3method(PhyloBetaEntropy, ProbaVector)
S3method(PhyloBetaEntropy, AbdVector)
S3method(PhyloBetaEntropy, integer)
S3method(PhyloBetaEntropy, numeric)
S3method(PhyloDiversity, ProbaVector)
S3method(PhyloDiversity, AbdVector)
S3method(PhyloDiversity, integer)
S3method(PhyloDiversity, numeric)
S3method(PhyloEntropy, ProbaVector)
S3method(PhyloEntropy, AbdVector)
S3method(PhyloEntropy, integer)
S3method(PhyloEntropy, numeric)
S3method(plot, CommunityProfile)
S3method(plot, DivEst)
S3method(plot, DivPart)
S3method(plot, DivProfile)
S3method(plot, MCdiversity)
S3method(plot, MCentropy)
S3method(plot, MetaCommunity)
S3method(plot, PhyloValue)
S3method(plot, PPtree)
S3method(plot, SimTest)
S3method(plot, SpeciesDistribution)
S3method(Rao, ProbaVector)
S3method(Rao, AbdVector)
S3method(Rao, integer)
S3method(Rao, numeric)
S3method(Richness, ProbaVector)
S3method(Richness, AbdVector)
S3method(Richness, integer)
S3method(Richness, numeric)
S3method(Shannon, ProbaVector)
S3method(Shannon, AbdVector)
S3method(Shannon, integer)
S3method(Shannon, numeric)
S3method(ShannonBeta, numeric)
S3method(ShannonBeta, ProbaVector)
S3method(ShannonBeta, AbdVector)
S3method(ShannonBeta, integer)
S3method(Simpson, ProbaVector)
S3method(Simpson, AbdVector)
S3method(Simpson, integer)
S3method(Simpson, numeric)
S3method(SimpsonBeta, ProbaVector)
S3method(SimpsonBeta, AbdVector)
S3method(SimpsonBeta, integer)
S3method(SimpsonBeta, numeric)
S3method(summary, DivEst)
S3method(summary, DivPart)
S3method(summary, DivProfile)
S3method(summary, MCdiversity)
S3method(summary, MCentropy)
S3method(summary, MetaCommunity)
S3method(summary, PhyloDiversity)
S3method(summary, PhyloEntropy)
S3method(summary, PhyloValue)
S3method(summary, SimTest)
S3method(Tsallis, ProbaVector)
S3method(Tsallis, AbdVector)
S3method(Tsallis, integer)
S3method(Tsallis, numeric)
S3method(TsallisBeta, ProbaVector)
S3method(TsallisBeta, AbdVector)
S3method(TsallisBeta, integer)
S3method(TsallisBeta, numeric)
