7b0f6bcd44defe100280a447ff3eed62 *DESCRIPTION
7e0e03ec9ec93549a62028ff82467208 *NAMESPACE
070d2eb3de3c0cf2fa9692f903d7cf9a *R/dataDoc.R
59c0aec708176b949574e856b29da876 *R/dynrCook.R
f52f85114439427b96f886de36de5892 *R/dynrData.R
1f39fa613bcfca8f1adf8884cd42b9bb *R/dynrFuncAddress.R
22b4967f32b1d658cdd30680be6eae47 *R/dynrModel.R
c3c6a07375c0efeba99575c566e4c5e5 *R/dynrModelInternal.R
d3c8dc60fffd52072d19b0757fd4a9f2 *R/dynrPlot.R
ec0a71d1dcecc6f05da6cff4ba69fca0 *R/dynrRecipe.R
9cab16b8e3cb5d2bf72d9a7c3d911daa *R/dynrVersion.R
63a2b3d53811033e637db22f83164071 *R/dynrVersion.R.in
e6dc5288ea7f52beb6a2355957548d4d *build/partial.rdb
2a2f823b986ebabb8a524a946d960277 *configure
6fc161dfc8c2abf9064e07069145dc6e *configure.win
42d2093142d41f80a9c2ca1b6aea10a1 *data/EMGsim.txt.gz
d9dce7ea7e4d2e6377651492b4884571 *data/NonlinearDFAsim.txt.gz
d8969682d4594b8842f061c7c86da9cb *data/PPsim.txt.gz
5a9a260874738ead0c573f320ff02719 *data/RSPPsim.txt.gz
89482bfbf95001c617729df5c9aa2ec2 *demo/00Index
95ad5208b4fd952c81f5c424160e12b0 *demo/LinearSDE.R
9ba5f310f697d5d9df3bb179cd36f47b *demo/NonlinearODE.R
2a4c02cf25960f2d98ed0ea33c6ad070 *demo/RSLinearDiscrete.R
027c18b51755dbbcdaf3345ffbd4ecf7 *demo/RSNonlinearDiscrete.R
66b5aeb16a0528685d078ed54448006d *demo/RSNonlinearODE.R
e71266093722618174b4751cab01078f *inst/models/slow/MCTest.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSODEmodel.c
d697566c3d23b29fd917fe49db8ca727 *inst/models/slow/RSODEmodel2.c
8ef3d488a81bce4d8471577d544253fe *inst/models/slow/RSlinearODE.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSlinearODE.c
dfd436323879f09fb9c8ef44169d4d07 *inst/models/slow/data/Model2T1000n20batch1ODETrueRegimes.txt
7a3f661bf7ae7f53960740e634a7a329 *inst/models/slow/data/Model2T1000n20batch1ODETrueStates.txt
a8acec45b1d20fee4a868eebc9fce66d *inst/models/slow/data/Model2T1000n20batch1ODEsimData.txt
3b205070cd03ebac5f9f76bd89837a07 *inst/models/slow/data/Model2T1000n20batch2ODETrueRegimes.txt
21cf61480f4e0db723407e793184a536 *inst/models/slow/data/Model2T1000n20batch2ODETrueStates.txt
1907b6921c9d805b65226c2c7b18f55a *inst/models/slow/data/Model2T1000n20batch2ODEsimData.txt
ca49445b860c7fcd03b7b09cee1e2691 *inst/models/slow/data/New2CovT500n10batch1ODEsimData.txt
08c3aa88cfc5b03115f880566b766f68 *man/EMGsim.Rd
d46424f27de637dda1d7c03967c97343 *man/NonlinearDFAsim.Rd
baf7b36f14c53e016b7ffb7851be2397 *man/PPsim.Rd
79345a0b4e310a4613c608a30466009f *man/RSPPsim.Rd
61c8fcb3603a986f187fea6e20d61f27 *man/coef.dynrCook.Rd
e5c445e29525c51de46e47732952d536 *man/diag-character-method.Rd
01477e3b6607279441ffe7cc80fc3024 *man/dynr-package.Rd
b9c444946d6df8b50ff7e27e420f9551 *man/dynr.cook.Rd
aef96df248da686a4a9eed671bbfb5fe *man/dynr.data.Rd
c5bb0d02f62e1ccda5baa029d7803ab8 *man/dynr.ggplot.Rd
0199cb4358d0a3c937c958486f48b6cb *man/dynr.ldl.Rd
a144f681ead03f27ffd5c25902509dbe *man/dynr.model.Rd
065cf26a76a0826edfa95f8dff3dbca6 *man/dynrCook-class.Rd
04aef7e45c4f325eeacd5cc71319511f *man/dynrDynamics-class.Rd
1579e70f75f3550da04f0bb531d501d4 *man/dynrInitial-class.Rd
501420aefca699278cd5154e02278fba *man/dynrMeasurement-class.Rd
aeff972a57dcf8967c1c450fd0d7d4bb *man/dynrModel-class.Rd
aba1b0e27ac465560f5039fda421d332 *man/dynrNoise-class.Rd
262ea99c9a1026ac3b63547d0313166b *man/dynrRecipe-class.Rd
f27bce31cdf77bf6a26c4cf3f2cb6676 *man/dynrRegimes-class.Rd
56ca6f0c290e4df83d2068fa133741b5 *man/dynrTrans-class.Rd
6187ef60a248d984f13516c67bfe98f2 *man/internalModelPrep.Rd
998c7bb80ecdea59d224040bab4f86d3 *man/logLik.dynrCook.Rd
c9db4f74f47e14262616d73b8597e6fa *man/plot-dynrCook-method.Rd
aa76e1ef5c3f2ed805c762aca43eb4a1 *man/plotFormula.Rd
d58b8033b274ee9fd808dd21fefce516 *man/prep.formulaDynamics.Rd
e4d0b185754add1bebbfda031ca76a8e *man/prep.initial.Rd
5a67710eb2d4f4551dc131d816352c6b *man/prep.loadings.Rd
8403ad11abe2278eb211e430c847837d *man/prep.matrixDynamics.Rd
ea9369e5a70ebafac71b65d1a13a604d *man/prep.measurement.Rd
65d3ab8c0968c6b0fddf4ebf38d974b7 *man/prep.noise.Rd
ecf9fe7e9eda1d3367b3d6532ac4ac11 *man/prep.regimes.Rd
70dcad5960f2e87edcbfe6b398d3108e *man/prep.tfun.Rd
8a26102242c561f736a4b04f0867108e *man/printex.Rd
6815b78c24b9e271a02c2b3bfca1446d *man/summary-dynrCook-method.Rd
7e8b8bef3b2a9c3354432ad4db342e39 *man/vcov.dynrCook.Rd
27631498103b08980fc77fb027f309ae *src/Makevars.in
9ad2e7f37645e8bae554f2727cb35826 *src/Makevars.win
cd87bbd732e58fa299e8ddc9362f7537 *src/Makevars.win.in
cb3afcc107ca001e1a841e3058c7e9b1 *src/MakevarsGSL.win
fca6316261e9f2a2e76f70f4e0326ea5 *src/MakevarsIgnore
43f935651d16579dda9f5dc7cfd19a41 *src/adaodesolver.c
e9f1df8271427e034532757fd7948218 *src/adaodesolver.h
f83f9b922fc00b56b63f75c9969649e2 *src/brekfis.c
c6cf5f5c6808109c1a9cd1cc0d1bbaff *src/brekfis.h
d24e48042dada9d189bf5f4ade38c9c6 *src/data_structure.h
7ff8e0e77961fcb64c19fad638853773 *src/debug_onair.sh
c46261ee9047f43f539d7b42f888791b *src/debug_onmac.sh
d64a67094aef3f504230d5e34664144c *src/ekf.c
4258b4147e68e119b09149e2408042a1 *src/ekf.h
9aeb251d12e7bc147b1013be79bc35fc *src/estimation.c
4d9fdae6f0f480cf787a54c81de70c7f *src/estimation.h
7790845d51f3c908b28602e2d236e627 *src/general.c
a5e02e251b65e541538c0ca94f211edf *src/glue.c
2bb3fe6b7ebb899ce74f1b63affe7347 *src/mainR.c
5f7041f38eb4eb8c1d77e560e08fd96a *src/mainR.h
4fbb2c75749da34f4cc66d508f64035b *src/math_function.c
08d072273bef8a274311b076cb064516 *src/math_function.h
9bb08148c25b9115b015618cb20910dd *src/model.c
e3595686f63b4676e96e30959c61c8f3 *src/model.h
fc1d67946a060243ac0f0ac75bc4da2d *src/neldermead.h
2a77df5d65c208d368fa7102f58fc891 *src/nldrmd.c
4b7910ec3200b81a25ad63c7ad1cf7a9 *src/nlopt-internal.h
2ff94eaad5eaed51d937d589eb673897 *src/nlopt-util.h
6c225833bcda94a97ea0466284ed1630 *src/nlopt.h
6e7cfc3ce4f1c7597ae59d83eb7fc254 *src/numeric_derivatives.c
f686cd3da928af978fab58d3d6991ac8 *src/numeric_derivatives.h
126ae09a41dbca7a51e05425033340a7 *src/optimize.c
1704e7888ca44a3aa0647ec3db7def2d *src/options.c
e3247fa742659d2d3eaa55f98159a6b5 *src/print_function.c
c95fafa07328434ee45b9f5bfb42a8b5 *src/print_function.h
533c2a9397de70a6c80c733ea0c3b26a *src/qsort_r.c
9914ae83064dfcd800182b253db48266 *src/redblack.c
908320b8131a3b49735bc933414bf1bc *src/redblack.h
973ec27866373b6d0337bef743f72f3a *src/runmainC_onair.sh
d65a8ace18e722b0f2c7647055cc6077 *src/runnlopt_onair.sh
8270bf070cb54b6c169e210510edb240 *src/runnlopt_onairwin.sh
7fcb98c63538e5e622decacb7deac1e4 *src/runnlopt_onmac.sh
5457a451a9d8fd14cc13deae0329a15b *src/sbplx.c
9036143892407b2e366e927e337c7072 *src/slsqp.c
a8379ca1ec5419136e85c9e036c495e6 *src/slsqp.h
e2f945871653acef7489996ca2f000c0 *src/stop.c
30eed01a128bfdb4403d9e36c012dfd8 *src/wrappernegloglike.c
417c73cdbb2fbcb6808ae9c7012b1ca9 *src/wrappernegloglike.h
b5f93d62614db4a11ee1361736ce9fe5 *tools/buildNum.sh
f11cb88b80d383ee81b933b8629c2188 *tools/configureAutoConf.in
3da4d854994ef2038b1d90dfedaf173e *tools/prep
efa1a6d7d916998d5131bce97f8a782b *tools/roxygenize
b4d57d694234f421c236f7994c3a878f *tools/testModels.R
