4d76421904862deda3f35b81e7a45a55 *DESCRIPTION
ce8101c39da85890547249b557ed22f0 *NAMESPACE
183efb76202ad2b40dfcf262adae657a *NEWS.md
9c076292be98abebfc363c12fc7c382f *R/JKalman.R
06bf6b152bd173de54a62625195a0238 *R/covml.R
5489d3ab606ad163c4e9916a52a823c4 *R/ctACF.R
c832201231e3815bd12cf596a8f48f88 *R/ctCheckFit.R
4e65e69bbd352ee5abb4e32ea080a484 *R/ctChisqTest.R
dd3baefcf7d35e64a422298cac6d7585 *R/ctDataHelp.R
c8730672f1f1d368e9a91830d3085a47 *R/ctDeintervalise.R
41006f8b709e7b7c4628c6bb8dc1b3fa *R/ctDiscretePars.R
c8ab8f5f82d209622fb7e1b87c220c8a *R/ctDiscretiseData.R
955455f09da670bca8bbb31c6881ab7b *R/ctExtractComplexMatrix.R
f6911c0441a2d9531e6a9d5f63d22ba8 *R/ctFitMultiModel.R
071b4e65b31a8f5aa1d92ad151047ec4 *R/ctGenerate.R
5c67a6624a25d8194f681d218a16bb0f *R/ctIndplot.R
2aace1b30db0306891232d9fe087820a *R/ctIntervalise.R
2c029beb7c4515084da7215dd4dc5079 *R/ctJacobian.R
71a8dd436ef714d5f4cfa8a63e795824 *R/ctKalman.R
8924152843829fdcfbefd1c79c482127 *R/ctLOO.R
7a2a9c220ace987a7c51de403076397c *R/ctLabel.R
18ae795b91c170d15554192540e6bfe3 *R/ctLongtowide.r
f04e500b7f71597fec6e71958980ec43 *R/ctModel.R
8e14658553337821616ac0bf4f6c343b *R/ctModelHigherOrder.R
dbe7360dd976d881a4df255add20a15e *R/ctModelLatex.R
3d8ade3a0753282696e25b823ec5cc91 *R/ctPlotArray.R
3cc108fae286eb547d473c8a9a781ef3 *R/ctStanContinuousPars.R
b74e9debf65f215cf273a504c1809fc4 *R/ctStanData.R
9e64b87f892e1136ee898ffebcc22e9c *R/ctStanFit.R
38d7bc56887c6134ab85af59b19100b9 *R/ctStanGenerate.R
508327a6d572833aa0b93e208b7dce3b *R/ctStanGenerateFromFit.R
00db0f67fe721862860a6c2650e92c1c *R/ctStanKalman.R
1402962785851ea6ed63af814d6e4e97 *R/ctStanModel.R
58bbe5577bf2273023391726e4b1c819 *R/ctStanModelWriter.R
078567d0285cb95a92509a2ccb7b26e9 *R/ctStanParMatrices.R
08792e4904d3af5b44963d2d83709cb0 *R/ctStanPlotPost.R
27f01dc45f4b014ca31404345fab50d5 *R/ctStanPostPredict.R
60b606d5d3ec4b9449e1a69e6136b4d3 *R/ctStanProfileCI.R
3179a2506b9c5335ec3612531cdea098 *R/ctStanTIpredeffects.R
82506b35599789f036aae087c27f1611 *R/ctSummarise.R
6b8ce0d78a12345aef746bab720dfbd3 *R/ctTIpredAuto.R
d4a53bc0b3a6e1d483487abfe1fb19d1 *R/ctTransforms.R
127e0a5834908e180a18cd00dd4f4894 *R/ctWideToLong.R
39be1bbcce432a34aacf4cc01a15c51e *R/ctdataupdate.R
28ff8d9c29ccb9d03abc589570d1cfc0 *R/ctsem-package.R
a162f2dce19cafea03786037c87adc99 *R/ctsemUtils.R
03c1ad882bfef5617ed8d138fdcaec96 *R/ctsmupdate.R
6a215b7b8bb18c2aa0c0ca2b050b112d *R/databasedTIpreds.R
a41fc3b27d2df9375ddaae1424af9dd3 *R/extract.ctStanFit.R
f2d4f9512a9fa4499185edfbefa710c9 *R/isdiag.R
b733494d3b075d007185f6a6144e5ef6 *R/listOfMatrices.R
3ca5631b4a2c43d50f3ee70400f093f5 *R/llsurface.R
fe08a898d699317e4502b4b1ac1350ff *R/modelchecking.R
eadfab594f1590d59933639d7620d2aa *R/plot.ctStanFit.R
476a6bc42074ff585a2496897ee5ebe3 *R/plot.ctStanModel.R
f3c622168c459c62cc528688a7719bb0 *R/plothelpers.R
e1e13ae03f47ec40c7a82f3ab1f2c28c *R/priorcheck.R
56fabb27e0d6fd63dfecde7f84ff0450 *R/sdpcor2cov.R
367885dcadd94464bd419ba28713bc3b *R/sgd.R
ef37f797e2b4a0a322ab5a093bae2631 *R/stanWplot.R
eede2e26f6be2ca9dfd7301e84b0190b *R/stan_checkdivergences.R
63328dd94523faa6a99d71a007652e61 *R/stan_confidenceRegion.R
7eafce42c5e62a445415e9531fe79f9e *R/stan_postcalc.R
ceba5e9b3c770ef549ce3eacd734c7cc *R/stan_unconstrainsamples.R
6c0a78aac1aa5b713d937d03744e2e16 *R/stanmodels.R
a929f91958aae89775ff522a00c493b8 *R/stanoptimis.R
d69df318c1e9f587a76859650f6b10e0 *R/summary.ctStanFit.R
d3de99c02711caf0a3076e9c30c682ae *R/tformshapes.R
24e12273de635b01edcdc03d15cbde0c *R/zzz.R
c2c722033127a54b9b71e1b0df5a27eb *README.md
ec401eea86057ec3e7573b28776a654b *build/vignette.rds
ba8de1802fba817da5350486ac1b653c *configure
c7855a0e088b186f0655b9c578b52ae4 *configure.win
55ca427c9d30e9db61fca57d83ced561 *data/AnomAuth.rda
61348d32218bea3f4ceef78fc38e576e *data/Oscillating.rda
d9fed372e9231549aa06d7dc4db2e2c1 *data/ctExample1.rda
f0d6365170b8b33ce8b83c92d5bcf675 *data/ctExample1TIpred.rda
d7e1c504974951869fa04bc657d15bcc *data/ctExample2.rda
93087907c9803f4448318d40e7255005 *data/ctExample3.rda
41475f11421cbea0cec95aaf93574c14 *data/ctExample4.rda
1c8f95246f065f84679fbc8a09eb3f0a *data/ctstantestdat.rda
356e6438348710efba891f7c53abefde *data/ctstantestfit.rda
fa0c3e77a75242b33409e49b153434f9 *data/datastructure.rda
69bf503e1c8a947c9a358186759c2fe5 *data/longexample.rda
efff50095c89aaaca5e85e36b39ba822 *inst/CITATION
f4474d07f14d6c7e6e07b70d337e985b *inst/doc/hierarchicalmanual.pdf
cf07d71337dc81659e580aeb0e4d7236 *inst/doc/hierarchicalmanual.rnw
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
439411e1f3752a6e6a5775be81686c54 *inst/stan/cov.stan
8f4590e08dc5d6414520221bb8cdf6c2 *inst/stan/ctsm.stan
c2d77bec6aad4995c6662d0cedeb9462 *inst/stan/ctsmgen.stan
4a937e0ef2274ad1cc7580c43345c8ca *inst/stan/include/license.stan
b2d28a6833d8a2df31d5be8c2f17137b *man/AnomAuth.Rd
fad7e98bf528cc0720499fbbb8eee198 *man/Oscillating.Rd
40ee447f3270b59752a57efa2ae8d74b *man/ctACF.Rd
0d67e755a1914386d7af3bdadb0249fd *man/ctACFresiduals.Rd
fc70300f9f1668dba06d67d1ed67c29d *man/ctAddSamples.Rd
6636414ee2b1624b9926b3731b75e7d0 *man/ctCheckFit.Rd
0669a8bf162f6e413b6f66d317bf385e *man/ctChisqTest.Rd
a5f03024db3923cdfd063fe2e4d724d6 *man/ctCollapse.Rd
6d9eecffc8fdfc63c82e9355ac50ccb9 *man/ctDeintervalise.Rd
f7b3d0346fa81d5838840bb8e1aba1a2 *man/ctDensity.Rd
ff599ea36e58f84c2e010dbf9db86bcf *man/ctDiscretiseData.Rd
13ee65bbeb24c97cf0d71e181e1970f2 *man/ctDocs.Rd
871fc8d13adfc2beac4a6eb931bcb6cc *man/ctExample1.Rd
804892cec267f3a4f7f166df2cc0ec36 *man/ctExample1TIpred.Rd
4abbf822a3464b7e74b7e9afa800f8ca *man/ctExample2.Rd
c62131886294c9156513e3fbdc74e507 *man/ctExample2level.Rd
d10781b80f83cc7ae6b04a6c52e556ea *man/ctExample3.Rd
46862c3954d6cc2a9b16962a7020e0c3 *man/ctExample4.Rd
05f65f30146e12c07274ea03474a7c4c *man/ctExtract.Rd
27840f17d6783a91ca238865644d7a2e *man/ctFit.Rd
e7e112d407c1bf64af7ed3e56895aa3f *man/ctFitMultiModel.Rd
51eb3110e21ede67be7c452cd0a6039e *man/ctGenerate.Rd
06486fdbc8dd5d7001d821f0a44de920 *man/ctIndplot.Rd
49dc7d732c8b482e4ff67410cda92719 *man/ctIntervalise.Rd
41ed38d3c2ab4b19956751631dff52b2 *man/ctKalman.Rd
c2db130fdb7207cbd19332e66f35f713 *man/ctLOO.Rd
bb11e27f12b2f3205a2e0be981ccd91f *man/ctLongToWide.Rd
324359cdf3b4fd1e9a53abadf5dc2e02 *man/ctModel.Rd
8f9f7013c3307513027386031190123b *man/ctModelHigherOrder.Rd
22d153747731012536a1f7d4f6d72f11 *man/ctModelLatex.Rd
18b67fec1191659a8e00a0f27a636e31 *man/ctPlotArray.Rd
ac8774765fdf39592a3c0b5f6027c64d *man/ctPoly.Rd
36a6cae56741f332e80dad22ad6115b0 *man/ctResiduals.Rd
9633b5bb27c9f6110744e3e05f9a22ff *man/ctStanContinuousPars.Rd
92999875749c0354ef50e8349533add7 *man/ctStanDiscretePars.Rd
319c768442408e537c3313cb0bf17523 *man/ctStanDiscreteParsPlot.Rd
4048af0a74bb8eb7300722e9af848250 *man/ctStanFit.Rd
dece23ab43d6a7b14f71bebab9d89b16 *man/ctStanFitUpdate.Rd
0a0b077f46b2c6fc272fce373ceaaee0 *man/ctStanGenerate.Rd
dafe979f3592d90342715aecb3d87721 *man/ctStanGenerateFromFit.Rd
8d9387f5a4b807bda1a66a8d0490b214 *man/ctStanKalman.Rd
5d78b2dd79b207f3a8e488fffb243440 *man/ctStanModel.Rd
c09d00279393746c0a6a3989003f6af3 *man/ctStanParnames.Rd
a63a5d727bf9cf6e635f2ac89a9e5624 *man/ctStanPlotPost.Rd
00f87da80e8060ac50135d64f3c2e071 *man/ctStanPostPredict.Rd
a7eee382036a9e257b4f3fcc8b6865dc *man/ctStanSubjectPars.Rd
63dbb546d462c2879e2c71840b9f8944 *man/ctStanTIpredeffects.Rd
420be5dc0339c656b12d4c5fc82a60d0 *man/ctStanUpdModel.Rd
cb78b02c00a9e554cdd973ae02ecc936 *man/ctWideNames.Rd
a09249f8934ba1b0dd5203c165dca97f *man/ctWideToLong.Rd
3ccbb7a81bcab1b398e01be676f56c9a *man/ctsem-package.Rd
8071a349eb8234141ce391d19e133c9e *man/ctstantestdat.Rd
ae9c9cb5e50786467f082f8f2dffff62 *man/ctstantestfit.Rd
5613e30d9dde49993679246df9bf7c44 *man/datastructure.Rd
9c560dba840c3006b5c6ca9170b2908e *man/inv_logit.Rd
538cd34318632e35c19617cab86f3b94 *man/isdiag.Rd
ee5ce56164f39d9bf059687750219e64 *man/log1p_exp.Rd
e1aa6045bee358b4260a9e8b61d4d53e *man/longexample.Rd
11c29dbceb417b6614295c2395478c77 *man/plot.ctKalmanDF.Rd
12fb27fd226e340a320cdf5d06b9e0f3 *man/plot.ctStanFit.Rd
bd672b2d5c680ee29eb9019e7004e226 *man/plot.ctStanModel.Rd
12997d49e763dec8d84169a8645d82dd *man/sdpcor2cov.Rd
54d644fb4cf1ac5611e20c1d10937b77 *man/stanWplot.Rd
25bd6c0e276e6705a3993491b3cbbb9e *man/stan_checkdivergences.Rd
ac9b6aada8daf6314b4dd631c8f226f6 *man/stan_reinitsf.Rd
c96dd6d824c635091c38ba691bdf81be *man/stan_unconstrainsamples.Rd
de3a380b2c7b3804c492ef9787699f1f *man/standatact_specificsubjects.Rd
1a68592cd624c033958a0ce7ac18c88d *man/stanoptimis.Rd
e41eef4abc5861434f6dd392da1825da *man/summary.ctStanFit.Rd
5a645f46b95cecc0d074771d2852fdee *src/RcppExports.cpp
76ca350c5cce00f4bb99cf4538fd7de8 *tests/testthat.R
55c066e5d1a71283096db6affae7536d *tests/testthat/test-bivariatetrait_hmc.R
ad42cf969cee0f04668164d85772c33d *tests/testthat/test-bootHessian.R
2de350b6aabd809b48164fe0cb47086c *tests/testthat/test-corrcheck.R
a2a474470cf9f5a39cdc7838f7a35e3e *tests/testthat/test-ctLOO.R
e364858e3688be3278ea315f89d57ed9 *tests/testthat/test-ctRaschExampleTest.R
0be9c2eefaf1fdda7132c6726c1f753a *tests/testthat/test-dtVct.R
f1c373ef5186989a725655f3c2851e7b *tests/testthat/test-fixedvalsunspot.R
5b9e62bd87a8582138b4904cba3cbd42 *tests/testthat/test-intervalise.R
eae59a5050b2ca2b36fce300f22f0a7f *tests/testthat/test-knownFits.R
a502352bd891ed536b327dcabee07052 *tests/testthat/test-nonlinearVlinear.R
1670a8c1d40ff9a2f3bd2689f26244ad *tests/testthat/test-reshaping.R
93e89d86e62827f33b01752d2be4ea2d *tests/testthat/test-runExamples.R
cee60cfd55972a73aca5b9a427211029 *tests/testthat/test-stantipred.R
307672e86f97380536a97fabea58e6ad *tests/testthat/test-sunspots.R
86f2dae9f506b0363f863ddd26cb3dc3 *tests/testthat/test-tdeffectvariation_covtest.R
c5d15978bf001af3e0649957fb8c75f4 *tests/testthat/test-timevarying.R
ec3ef835975443bbd35d78d1d698f73a *tests/testthat/test-ukfpoptest.R
af1936cfffc5c3a236a7830829b91331 *tests/testthat/test_behavGenNLcor.R
cf07d71337dc81659e580aeb0e4d7236 *vignettes/hierarchicalmanual.rnw
5ef0c51020eb3574db19c92d2c4779fc *vignettes/hierarchicalrefs.bib
