Cramer                   The Cramer-von Mises Distribution
as.ts.mcmc               Coerce mcmc object to time series
autocorr                 Autocorrelation function for Markov chains
autocorr.plot            Plot autocorrelations for Markov Chains
change.tfoption          Interactively modify logical codamenu options.
coda.global.assign       Cross-platform assignment to global environment
coda.options             Options settings for the codamenu driver
codamenu                 Main menu driver for the coda package
codamenu2                Submenus for the coda package
crosscorr                Cross correlations for MCMC output
crosscorr.plot           Plot image of correlation matrix
densplot                 Probability density function estimate from MCMC
                         output
effectiveSize            Effective sample size for estimating the mean
gelman.diag              Gelman and Rubin's convergence diagnostic
gelman.plot              Gelman-Rubin-Brooks plot
geweke.diag              Geweke's convergence diagnostic
geweke.plot              Geweke-Brooks plot
heidel.diag              Heidelberger and Welch's convergence diagnostic
line                     Simple linear regression example
mcmc                     Markov Chain Monte Carlo Objects
mcmc.convert             Conversions of MCMC objects
mcmc.list                Replicated Markov Chain Monte Carlo Objects
mcmc.subset              Extract or replace parts of MCMC objects
mcmcUpgrade              Upgrade mcmc objects in obsolete format
mcpar                    Mcpar attribute of MCMC objects
multi.menu               Choose multiple options from a menu
nchain                   Dimensions of MCMC objects
plot.mcmc                Summary plots of mcmc objects
raftery.diag             Raftery and Lewis's diagnostic
read.and.check           Read data interactively and check that it
                         satisfies conditions
read.bugs                Read BUGS output files
read.bugs.interactive    Read BUGS output files interactively
read.yesno               Read logical values from the command line
set.mfrow                Set layout for graphical plots
spectrum0                Estimate spectral density at zero
spectrum0.ar             Estimate spectral density at zero
summary.mcmc             Summary statistics for Markov Chain Monte Carlo
                         chains
thin                     Thinning interval
time.mcmc                Time attributes for mcmc objects
traceplot                Trace plot of MCMC output
varnames                 Named dimensions of MCMC objects
window.mcmc              Time windows for mcmc objects
