bf8b9f530a2a6f7916f65581366e018a *CHANGES
4e1e16fa1a537b5e7340de90fcb6a740 *DESCRIPTION
7a0ece4ff89967dd5a856d56a5a97b43 *NAMESPACE
befb3509cf7bc34b1340797be9cb53d9 *R/brunch.R
22e87076b9cd3cc3cc2bddba9f88c6be *R/caic.diagnostics.R
db9e7ce8835b52a61dcce351b7630a96 *R/caic.methods.R
200b2f47867f55370bb2df85fd34d3fa *R/clade.matrix.R
e6cb451384f2b632170e28e44a24a06b *R/clade.members.R
b3697afc58ba07bff7466a808d7b6991 *R/comparative.data.R
e0c94782033478141482c76d67f6d5d6 *R/contrCalc.R
8478a4803c2efbea7db64ad3348c40b3 *R/crunch.R
6932e99ea8f28e8f674b9ce16ba42355 *R/fusco.R
a96e32a919e449377ca3c2abed4bde5d *R/growTree.R
d772df1bf621e006728e1e9d6dec098d *R/macrocaic.R
3af0997c9c4ceb043ccc6145b1ebf59a *R/pd.calc.R
d2fde77cb01cfd44b2fbc515d55b850a *R/pgls.R
f39a7b7471cfe3f282f765c3108dd198 *R/phylo.d.R
ac55b06df4f068b3be8908c1c1946a81 *R/phylo.d.subset.R
c9be7a96e228bcc9344efb60aa199657 *R/vcv.array.R
9a9e9dc5b8174300bbf3c9fd9dc7c1d1 *benchmarks/BayesTraits/BayesTraitsBatch.R
fc1dca0f12193d713e19e8751a285379 *benchmarks/BayesTraits/test.dat
7b300e711aefa9e0c043dec0eeea269e *benchmarks/BayesTraits/test.nex
4bcf72e27abb92673146032985e3ec30 *benchmarks/CAIC/BenchCAIC.dat
b74d1de41772ad558c6fe42861356852 *benchmarks/CAIC/BenchCAIC.dat_BrDi1057
16c3aa6a3e445d4d0b306ef8530abdf9 *benchmarks/CAIC/BenchCAIC.dat_BrDi1157
61e38aca0c7a551eae5996a7be0679e7 *benchmarks/CAIC/BenchCAIC.dat_BrDi813
11ec2d243d7a001ea930d25655b6b899 *benchmarks/CAIC/BenchCAIC.dat_BrDi913
707e950a069235709fe7e2dbb97255d2 *benchmarks/CAIC/BenchCAIC.dat_BrPl1057
a18494c554994fab441fe5d58f304cd7 *benchmarks/CAIC/BenchCAIC.dat_BrPl1157
59542dc7b4feda0768b8d898bb900a8f *benchmarks/CAIC/BenchCAIC.dat_BrPl813
2da6ee7b08b486613dc1ffd7a7735193 *benchmarks/CAIC/BenchCAIC.dat_BrPl913
b780d0587f8d4d5899e0a624f898e8d4 *benchmarks/CAIC/BenchCAIC.dat_CrDi213
8f73863b94e0e4123dba18256f06e356 *benchmarks/CAIC/BenchCAIC.dat_CrDi657
e957ad43dce7bce0c941eb51ecc1884b *benchmarks/CAIC/BenchCAIC.dat_CrPl213
5e102bd77e82447ec7de683aba7c7715 *benchmarks/CAIC/BenchCAIC.dat_CrPl413
eb654747759fad97f0c47289ba6ccd07 *benchmarks/CAIC/BenchCAIC.dat_CrPl657
62499802876aa2dbf5abd6a4615f7347 *benchmarks/CAIC/BenchTreeDi.blen
43b9d4e9f55ce2fa4e13112dd67ff46a *benchmarks/CAIC/BenchTreeDi.phyl
8da0482a564df7e89ee6a7527e43b8de *benchmarks/CAIC/BenchTreePoly.blen
3e2d64e84a5fb806ad9ee2719138e413 *benchmarks/CAIC/BenchTreePoly.phyl
eaa5fb9788db63fd451e9a33b6b9eb12 *benchmarks/CAIC/CAIC_BenchTreeDi.log
f1fd64774550a6c178d3775062234a5e *benchmarks/CAIC/CAIC_BenchTreePoly.log
72302a917c6fab64963750f649380b1a *benchmarks/FUSCO/BenchFusco.txt
527bce609b496609dca5878848012976 *benchmarks/FUSCO/FuscoDiSpp.txt
6ca91bf383aac5f6d42497166f26adf2 *benchmarks/FUSCO/FuscoDiTax.txt
4f72a7acf38735e483bf4cfb6465a09b *benchmarks/FUSCO/FuscoPolySpp.txt
2a3826221f11b71d7ac749da73f4fe2f *benchmarks/FUSCO/FuscoPolyTax.txt
4bcf72e27abb92673146032985e3ec30 *benchmarks/MacroCAIC/BenchCAIC.dat
62499802876aa2dbf5abd6a4615f7347 *benchmarks/MacroCAIC/BenchTreeDi.blen
bb46cb4621f922edf2cc4af38175e78f *benchmarks/MacroCAIC/BenchTreeDi.nex
43b9d4e9f55ce2fa4e13112dd67ff46a *benchmarks/MacroCAIC/BenchTreeDi.phyl
8da0482a564df7e89ee6a7527e43b8de *benchmarks/MacroCAIC/BenchTreePoly.blen
3e2d64e84a5fb806ad9ee2719138e413 *benchmarks/MacroCAIC/BenchTreePoly.phyl
243a10f08250f06466e925b9fd152523 *benchmarks/MacroCAIC/DiSpp23.txt
39b353fbbee07ba3a4f3b20ce1c4a60b *benchmarks/MacroCAIC/DiSpp67.txt
de764b19e58eb0b450bc63a98e6db7af *benchmarks/MacroCAIC/DiTax23.txt
ec03bf2e77e6e079b7292fb44c18661b *benchmarks/MacroCAIC/DiTax67.txt
cdc4f5ef3d3e6b08986b4a0ac5e97d97 *benchmarks/MacroCAIC/MacroCAIC_Bench.log
e7a59cf51dca95b515b0e4301e676a0b *benchmarks/MacroCAIC/PolySpp23.txt
74e37fdc5d4e6b0d94c4927dbd01f9ed *benchmarks/MacroCAIC/PolySpp67.txt
5a9a083a15cfa5a1f677922c88b9d926 *benchmarks/MacroCAIC/PolyTax23.txt
685a271e0e17abb5b136a87f8477899b *benchmarks/MacroCAIC/PolyTax67.txt
6e05ca04be69bb2bab3c279547826bfc *benchmarks/MeSA/BenchTreeDi.rich
6e05ca04be69bb2bab3c279547826bfc *benchmarks/MeSA/BenchTreePoly.rich
58354e64c30fb7b4b25562b4c955d6a3 *benchmarks/MeSA/MeSA_Fusco.log
be7f3ac25601f0e1df0bae41639fc81a *benchmarks/MeSA/MeSA_FuscoI.txt
d057cda7f320761520258d704427e37a *benchmarks/MeSA/syrphidae.nexus
9c8e2671213c2f5711868d4d53e4f74f *benchmarks/MeSA/syrphidae_tabbed.txt
c81b8964ef11ea6bf0b910d1d8d27245 *benchmarks/benchmarkToData.R
dde492efcaa06ba12d0065f1444f8ebd *data/BritishBirds.rda
fa587ed1c68ea3c0c7bb548afc6823dc *data/IsaacEtAl.rda
94c4e7d4a93bb4da9ec6086da34eeca8 *data/benchBayesTraitsOutputs.rda
3f93bffe5a56824f511a74d9ff420e5c *data/benchBrunchOutputs.rda
d14b5a5a2840dce2152929cb208e5df5 *data/benchCrunchOutputs.rda
263993d09d1641c79ae94fcc4b7a28d3 *data/benchFuscoOutputs.rda
0991552af2a44fcdbc5ebb48cbf13d2d *data/benchMacroCAICOutputs.rda
df41693833e6bea4f57362bee24610dc *data/benchMesaOutputs.rda
fcb164c2fb957b948e8910f4f4a3bec6 *data/benchTestInputs.rda
1277b907fbcdc9f83c59ad302c397fb0 *data/fuscoData.rda
02a099a215130479920541174b070f95 *data/perissodactyla.rda
bb55af05fbfdf49d6ecfc2e1ce27b34e *data/pglsBenchmarks.rda
a73c012b967eb40cad9f5af78c885342 *data/shorebird.rda
5b091ac098926b97c8672faceaf52d3c *data/syrphidae.rda
1b194181fd269161334874878a3d9288 *dataSources/BenchData.txt
b04fe017eecb6d838da70efc23be772f *dataSources/BenchTreeDi.tre
aa17d335a8f819b770c601cc1259f3dc *dataSources/BenchTreePoly.tre
d48c0a4bebff535445bce3d5e2a5cad9 *dataSources/BenchmarkDataCreator.R
f326b87aadfd74481140d2aba77bd7fb *dataSources/IsaacEtAlData.zip
0d28d5b3021284cd49c225e75495dbab *dataSources/IsaacEtAlDataTranslate.R
70edce2027d54246d35b6df43ac4d5b0 *dataSources/Thomas2008.tre
f83f53688876673983ea34f212106e37 *dataSources/Thomas2008Data.txt
4095ee7236f9d8e1563c3c6696863721 *dataSources/Thomas2008Translate.R
1d9b02bef11ed358f1d812cfa3032dad *dataSources/benchTestInputsCreator.R
4f0c5a31b48ef248d9664186834ea269 *dataSources/shorebird.csv
935f39ba37ab578f2cad5c6baadcbfc8 *dataSources/shorebird.nex
fc1dca0f12193d713e19e8751a285379 *dataSources/test.dat
7b300e711aefa9e0c043dec0eeea269e *dataSources/test.nex
75b790aae43528e1fec0e576f56bf58e *inst/doc/caper-benchmarks.pdf
0a3532c83124f19d1434aaa7cfc53ba7 *inst/doc/caper-benchmarks.rnw
18f5b53b0cd75a9c7420a0030e787569 *inst/doc/caper.pdf
c874f22fa4f5db33c04c50953f3cc9d4 *inst/doc/caper.rnw
a8b84a2d96560fdaa729d267d76021a7 *inst/doc/caper_refs.bib
c17e543e9ac10a0e0669b50f523a0cd3 *man/BritishBirds.Rd
2f9b3afe525297c0e19f8824395a5667 *man/IsaacEtAl.Rd
9a5e10d3485c4bc7fb5d4240256e7f15 *man/anova.pglm.Rd
e5e44395335987d9577296b9d7733c03 *man/benchmarkDatasets.Rd
7afd1194e914d5cd559c403e11e9ce2a *man/brunch.Rd
dc88a8a1d41ecf42019a0fec72da0381 *man/caic-class.Rd
6baf61a439b900d0492d5580540ed41b *man/caic-methods.Rd
f3efd239c3925f5f53a068d7f76dad73 *man/caic.diagnostics.Rd
d29577027c33f0e433e115b7ef06a8c9 *man/caper-package.Rd
19b223ed4532e6741e0ff5bd9efd0cc4 *man/clade.matrix.Rd
e3303afe93371f60c7275d3eb3652bbf *man/clade.members.Rd
18da8dd9d105946cc486b129f8f6cb9b *man/comparative.data.Rd
acd814f576d603d3d367ce7e516b5fd9 *man/crunch.Rd
68747eafe99bf2ee9674c5369f2ced55 *man/fusco.test.Rd
e005bc0622adbeafefccc4d85748a0b7 *man/fuscoData.Rd
3ac20258623199596f68e5b6851c7ca2 *man/growTree.Rd
0807ffc8b5b67cb7b36e0dc6b617c516 *man/macrocaic.Rd
376433dc364b2b4d01ef0c974aa20227 *man/pd.calc.Rd
7155fc4c7d26ecedc115c7233adcf297 *man/perrisodactyla.Rd
fb6698fb01c5324331f602ef2e92bb0d *man/pgls-methods.Rd
6d01088e441880b5fa89de38377a80c1 *man/pgls.Rd
5947ab4e2d5e78a47ffde790f266eb6e *man/pgls.profile.Rd
7131176e6697c9f92ba0a1463dc711c4 *man/phylo.d.Rd
9dbc5ed347f6a9f48254a59d870e1b55 *man/phylo.d.subset.Rd
dcf126eb5923bd9f9511393613435a84 *man/plot.pglm.Rd
82087a02d5f60823290f9eb9c19706aa *man/shorebird.Rd
9d0fd20abaed8feab83817fa7b836bc1 *man/summary.caic.Rd
c6a5e691d64e42e99ec04edc15b7e31e *man/syrphidae.Rd
5c0918e6e79a627938ec01f240afbe31 *man/vcv.array.Rd
