372c98f19fa4aa9b642f7c7a9d9c9c38 *DESCRIPTION
b470404bbe7a6867cc8911696420599c *NAMESPACE
b1acbcbc3d95e7ed3429e45932576bab *NEWS
5e199f7bdb3b2dac728d499af72a66cd *R/aa123.R
3a1c88e13bfe0be7c84120618822e090 *R/aa2index.R
c5612ba42909e3b3124dfaf2f5c02f08 *R/aa2mass.R
4111e7549faf1b9232101345a523846b *R/aa321.R
8a2d7097e2f56c21e41f4532d20b41b9 *R/aln2html.R
8d0c6de53f5e031ec131ab1014bd775d *R/amsm.xyz.R
ef880390ae3f58420b0ab4121506c05b *R/angle.xyz.R
24e6d04ba0675d085cd3d07e8eedc3c6 *R/as.xyz.R
7881ce8c9340514d28f806154b4817ed *R/atom.select.R
35ef25bf95af456136017aaa2d6361f1 *R/atom2ele.R
17a8373e8df1a455dc17192f295bfb21 *R/atom2mass.R
48a555c4bee0d0dd3c02418713af7a87 *R/atom2xyz.R
9b53f56b34f3eb62b8b2845ad974d19b *R/bhattacharyya.R
05a73b08c9d6e9109e9fe97774917b4d *R/binding.site.R
0f977cb1878d94c573e7403f9cf8dd8a *R/blast.pdb.R
e30e78857cdcc09122a065928319fd1f *R/bounds.R
e171d0012895a2c490d3b1bdce048f01 *R/build.hessian.R
d466ea5cf94d1383b2df41cb5e695735 *R/bwr.colors.R
823299b98f138e0e72a3ba4f61c3af7a *R/chain.pdb.R
58322ff587abf5267ceb97fcc45de28f *R/check.utility.R
9030c3cc047750988cf382d8703974ca *R/cmap.R
775d33f5218ad4c8c0032cff9386aff8 *R/cmap.filter.R
59bd3ce7f893392b424cb7625b6a5b38 *R/cna.R
f8a3693499fbed8fe03b88ad24b42076 *R/cna.dccm.R
5d77a9b11b790ef31396986e497a9a97 *R/cna.ensmb.R
bed317d31d0d9d1c59f2ccac01a02afa *R/com.R
38f499fb3dfe078b410b3f2bf5201ef0 *R/com.xyz.R
c07c38377dc803eaa0444b02cbb87843 *R/combine.sel.R
464f4b247ec3a11136a67e51a30931e4 *R/community.tree.R
6b063f818fa98667191a4069019c216d *R/consensus.R
0530ddc97b7d04bcb2612fc117af0210 *R/conserv.R
79b09981ae9ebb6c05f5c8baedbdd04f *R/convert.pdb.R
14793ba84abc2fcd9dbbc7e8fda6be12 *R/core.find.R
5a2e60494f76459eeb447bbd65f584a9 *R/cov.nma.R
ad489e1ed9174a006c7ab5cd2ce8413e *R/cov2dccm.R
63cac65301a42de99972432b1c7c081b *R/covsoverlap.R
fef75828e128d284e8ca624977e44960 *R/dccm.R
67799b6b5176f95b1c00d8ee48633cec *R/dccm.enma.R
b9d923036a07d31ba20dd829773c1ba9 *R/dccm.nma.R
7d025b80d45273dd705ee8c8d257b35b *R/dccm.pca.R
37ddc053b3c29210daa1cb86db5175d6 *R/dccm.xyz.R
96286e9d868f5c4f6e059689acff33cd *R/deformation.nma.R
1beb2e06307b69059f64d6524ae68bcd *R/diag.ind.R
d9885c3180310f8b8778ee222d632567 *R/difference.vector.R
39fb3d1a826f062238691b7093213a22 *R/dist.xyz.R
46436b77133a3c79ce124dd8501990fe *R/dm.R
6cdb71ceedfe4523131a4765f60f812c *R/dm.xyz.R
6a1d337bf51b4b8f22103a9560fdd2a4 *R/dssp.R
4b3b80e358b9eb47bb1aef1ddd31113a *R/dssp.pdbs.R
032b43a1f8e7e10ef34d000ebf0bfb31 *R/dssp.trj.R
5ca5a2b19244bc513c04a8f72312dd01 *R/entropy.R
5de3a78a68dd83484abe5e52223bcb7d *R/filter.dccm.R
5de069534f527cf2c9d0066a55b45be7 *R/fit.xyz.R
7f0c0d6133252ca6896fd8f6d9cbc369 *R/fluct.nma.R
1969f6a1b39e4ebd9328ff9d4fd14db5 *R/formula2mass.R
228a1e2d7bae2b06cb955dc2849228e8 *R/gap.inspect.R
769ae731ef7637e9938b2cb7a24be4a0 *R/geostas.R
35490b75ea097f0208bd2d4f00800c45 *R/get.blast.R
20d47e236e4682cdd05ac4ceec435e5d *R/get.pdb.R
93743ad80033f8232d94a72adadc86ae *R/get.seq.R
a4650a718115f929a223abf936958772 *R/hclustplot.R
f07f4cb472fd14724f24e6a084685945 *R/hmmer.R
30fc6801198fc9058e989f652468d5ca *R/ide.filter.R
a1c7b2c881e3b27c86678708818782d4 *R/identify.cna.R
9face02e76a999d40e7d3c8f47d45565 *R/inner.prod.R
3f94af1fea31385cf6cd87517755b7b0 *R/inspect.connectivity.R
7a8f4adce82f83403bca213c01b5c685 *R/is.gap.R
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c5e4dd60572e029d5a99aff57a12814a *R/is.select.R
ff4bae24762c94c65b4c10d9774a76ee *R/is.xyz.R
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74e549c90c82575fbe6244218df80790 *R/lbio3d.R
4a283994a89e2b5e73a4cd08901ed216 *R/lmi.R
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2059cbaf48d7b411b285376d593f8d69 *R/mktrj.R
4ee4cc79d6370cb46b8bd50e26c6070c *R/mktrj.enma.R
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d7ed0d61455e1b71a749685e0b7a7894 *R/mono.colors.R
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865ae4e59c5667a570cf37beb5e092d5 *R/mustang.R
dba0191c38aaf56aa6b9dd16304ddce0 *R/network.amendment.R
8d1844c9a1b04949d3e74ca4e559ef89 *R/nma.R
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910547827e33bc292bea7d7588f6e0c6 *R/nma.pdbs.R
70d776448b5ed1c49b1d15b12d5e5db0 *R/normalize.vector.R
8bcd2d0791cb64f6f73f9a0caf3b4e23 *R/orient.pdb.R
78f5481dba72e37e66a350e3ee6b564b *R/overlap.R
bfb07d8049ba981029b5cef22eb8b367 *R/pairwise.R
6e76c8e31335687df8b369a1bdb3f57d *R/pca.R
5adfe681731442e5f470fbc59ffb6486 *R/pca.array.R
964e746cc789e91cccfdf3c2f79cfd5a *R/pca.pdbs.R
84c8023e33a4752ca0044234df7ef9f8 *R/pca.tor.R
722fa01e502805f92934d873ece0ffb5 *R/pca.xyz.R
130e4948d4426a2a96af9abd6d9738a8 *R/pdb.annotate.R
3f2ad072986b284847f62fa88e41cd1d *R/pdb2aln.R
8eaeadd4e3fb533a71f401c96cb5b6ee *R/pdb2aln.ind.R
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d7d324b2be7ce3b4e273d15bec43dc94 *R/pdbfit.R
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3c4234a682828ad53578b1db44967252 *R/pdbs2pdb.R
3a9e52c15521ad9349e878e392d9aa1c *R/pdbseq.R
42eccfde270df81ebfc0d768182b2320 *R/pdbsplit.R
b6c78a9ed5bf16948ed1c815c4358c54 *R/pfam.R
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03be36df173a5e748eb305ef4e8069c0 *R/plot.blast.R
262db150da5cebf1b5e4a522ad991fa1 *R/plot.cna.R
5f37909e7127bfda49e14dbc8e9ce4f7 *R/plot.core.R
779f7a23400cf90dfd7efd32b90b8f1e *R/plot.dccm.R
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9979be9ad91ac27290c418f60879a1d7 *R/plot.dmat.R
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d9c107896f903ac7d55428e3e0d9dda9 *R/plot.fasta.R
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119543f73aa719e47a54ee1b1418fc94 *R/plot.nma.R
59046c38eb74ab42fc5a93a93084f0f4 *R/plot.pca.R
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a0110652e10e3b8634be2998e54c7a7d *R/plot.pca.score.R
0d12278d413198ae0111ea4d7551ac29 *R/plot.pca.scree.R
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1bcbc6e946d9256b5cc2f5ae1cccbb0c *R/print.fasta.R
1547e70322d8525acaddbc42d0269c6a *R/print.nma.R
82dceefd5f52949a08489965d718db12 *R/print.pca.R
28a5d9590dd818b6200b2e97e502c9a3 *R/print.pdb.R
1a5f62d5aa393ebddcb43f70c5b36941 *R/print.select.R
586a84798de867b332fe10af487a4546 *R/print.sse.R
5cab345f774a13ba6147967a5d902a27 *R/print.xyz.R
48a31b7ffd4c43170f3ae1e87537c329 *R/project.pca.R
b0dc473b549c4d62c4c21a4261266536 *R/prune.cna.R
cdce6f66020e6d56eeca5e5662cad5ce *R/read.all.R
110a073d27ab0947b53ab95279a62d18 *R/read.crd.R
1fbaaca629b724cc51e53e9090eafb42 *R/read.dcd.R
952421f3b6bf1d8f768ed8666c801e03 *R/read.fasta.R
a5db9a8fed985366cca42ada6842982d *R/read.fasta.pdb.R
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4e1712a079ab46965eb09c579fde366b *R/read.pdb.R
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86ae9601ae525e4069e64ba153ae135a *R/read.pqr.R
9d6d66eb18a8533831a0bfedcd2453cf *R/rgyr.R
8dce578e11588b72651d4fa775a3e318 *R/rle2.R
4f5dfae4f0f39557f8245a183db44e6b *R/rmsd.R
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35757e42e7823b9e1498745c6b50ccf7 *R/rmsf.R
1f9d56bce23f0ba1a46c27adef9f5e38 *R/rmsip.R
9213954e43f1c8b542bb051cac91769d *R/rot.lsq.R
17f964beda193e47d0d23b96c972e8a4 *R/seq2aln.R
20b0d5449dfe02aacadc4f8cd29bff4e *R/seqaln.R
30873d8973f6944560bc314775041a5c *R/seqaln.pair.R
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531830c2dd096bcf7078661cf9d75e90 *R/setup.ncore.R
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573372f565bb10e9a426d37d68b9eee3 *R/sse.bridges.R
548986e72ad0231ed87f28fc034703c6 *R/store.atom.R
4ad767749c167d3f8dd2dc6c30325e23 *R/stride.R
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02b9229d7c25dfe12356d97abc055c25 *R/summary.cna.R
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05ee998067a81e37b1bb90dd57a2cec2 *R/uniprot.R
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6edf654c5a36ccb0db5f5226b2d40616 *R/vec2resno.R
9f6f7b95e0a8357c3c7e0893fff62dfd *R/view.cna.R
36b0ea830ce007e165d15030443d6ea3 *R/view.dccm.R
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fd1420d661c91e4be260a0d3c4f89576 *R/vmd.colors.R
fa497e012f25ee68018dade03faec429 *R/wrap.tor.R
09cb8f145e08d41466a11b90c9fd6b8a *R/write.crd.R
f7ec0b5657fb192ad6876aaa02999ff3 *R/write.fasta.R
0716d636fd29f9e6276cd1bf5151751e *R/write.ncdf.R
8dae17ea8e5eb91fffdf5684cf911d53 *R/write.pdb.R
548106c98ad8bf2b3b63686d9b7947ad *R/write.pir.R
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9e57938c5fa7ce30265b29e8750f4810 *R/xyz2atom.R
d6417ea8b3696a4c9fbc8cb45992d0e2 *README.md
64758af1d69c4ce66839d99a7994f686 *build/vignette.rds
b4187321783b82378e3f9be255107088 *data/aa.index.rda
cc5c543b6bc23991f0d43a6225a57e42 *data/aa.mass.rda
3ecede6fe9737508db5b4b25d6999ebe *data/atom.index.rda
fa83e2ac0f558f03e525c98b46597781 *data/elements.rda
e34a9476dd620f4bfd16b153d79e38ed *data/hivp.RData
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1a009064df11a8cb036d86a398669efa *data/sdENM.RData
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9c7346600e9e15eabbf6db7f04b6fb53 *demo/00Index
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5115f75c59507335aca02b35327f2324 *demo/nma.R
37555f4c7b54f97ed5466b49a958a176 *demo/pca.R
b7e58ea62baf621f669d3afd84de90f2 *demo/pdb.R
e180e37c6fb6f2438270c912943331d1 *inst/CITATION
491a55ef7caef842ab6229df896c6400 *inst/doc/bio3d_vignettes.Rmd
9cc1b8aa6adff34393a64336e8fb6b96 *inst/doc/bio3d_vignettes.html
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cdffbec11fea0886a52591d8650fefc1 *inst/examples/transducin.fa
89fb7d71149c8b40c36ae78f0f676535 *inst/matrices/bio3d.mat
738fed81a10b6bfcc3fe72d96e49643b *inst/matrices/blosum62.mat
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4eca44c2cbbe16f4c1920e5c5b5fec6b *inst/matrices/similarity.mat
15a67a41f598ff1a013631349de20e0a *inst/staticdocs/index.r
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