54e3e649fdfb1d55b2508e7e997d9ae0 *DESCRIPTION
e5fada2fdc8534d727b32036b668ec80 *NAMESPACE
14eeaecb50454e4ab7fe0503239e7730 *NEWS.md
5f9dd26f12c3e29d5f1cb2335549cbaa *R/MAX3.R
1c5ec5df0c1012f09f994f54f916ed94 *R/PRS.R
b0628d1f8bc371efe6d791c3f9154b3f *R/RcppExports.R
22ac5a0bbe4f09a392faae4cc6b94bd0 *R/SCT.R
5591cbc0424a86dec0f221b6efea15a6 *R/apply-parallelize.R
9f379373843d32c954a5ce919156571f *R/assoc-bgen.R
c29485107ce130e06a31c7ba35b61013 *R/autoSVD.R
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bda6c7a98db5413d5d69732c7c84bab7 *R/bed-clumping.R
92aad2734754bb76739cae5302a716ca *R/bed-mult-vec.R
d6479610ef45976283d02da889f40539 *R/bed-projectPCA.R
586fcd64db0fb04910a880ae1e59bf11 *R/bed-tcrossprodSelf.R
4aaac89926e1c9878d848c3f679ec27c *R/bigSNP-class.R
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eb8cca2018152c99a96b696d35ab125b *R/binom-scaling.R
97f4f63426ce836923af887ee8f683b0 *R/clumping.R
fcaa8d3e049ed239583bd78dea41c911 *R/corr.R
e0897c5ef1e67aa188667a54dc6fd76f *R/external-software.R
e9a7a8cb1028cdfff1ca6f12d953c135 *R/fake.R
4efe9a31b0134687d8c2a8b3e20ef545 *R/get-save-infos.R
a7ae2850f2b3dd16835cabed30d5df98 *R/impute.R
04ac851c758ef3629ce6ccc9f70ba51e *R/man-qq-gc.R
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6cdbcfe913e1ce4f6334cc1b0c0a2eba *R/readplink.R
d7692c8e9fb6f76f8e6bd81b452c5101 *R/subset-QC.R
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7c5437655da8ab94b772c1a62bba25af *R/utils.R
74dd07ba5f1f2d78ebf5ae6bdec1d688 *R/writeplink.R
85e07a57369653e4081317e630615113 *README.md
b6a17477d45da8d606bd64c09c0b2932 *data/LD.wiki34.rda
5f766059703af6e6a9cdf11b73174638 *inst/CITATION
9515fa6a3d128d9347c475949efeca29 *inst/WORDLIST
5cdf5da8fd1fc9e6593dd582e2a66430 *inst/extdata/cluster1
75aa2415b3d4d90646e7ab62cac04183 *inst/extdata/cluster2
b755fb8b6e309a766908dc94302446c9 *inst/extdata/cluster3
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6c814e0efd97822a06bf40008cba0519 *inst/extdata/example-missing.fam
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5865c5beb293af9e15ba050c98c907a3 *inst/extdata/example.bim
9e49838c4ef9572475057ec487f2475e *inst/extdata/example.fam
6564c95de7bc7fec80f71407c6764f93 *inst/testdata/before_readonly.bk
4a115902f68d3c8ef0f61cc841562c15 *inst/testdata/before_readonly.rds
396e1a460b04cb8d3eae307a8a9b9900 *inst/testdata/bgen_dosages.rds
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733bec288d7a1cd8dba4e2f1d8bfdb86 *inst/testdata/bgen_variants.rds
337eac82fed3ecdf779883f2c1b11ec7 *inst/testdata/bgi_example.rds
3a9fb2906a074338f6b40d185dd4cb43 *inst/testdata/clumping.rds
229ce928a2dcd8df1efa68dd5c9c4b60 *inst/testdata/example.ld
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9e029cb629e96ec9f36dd127b45eb110 *inst/testdata/scores-PRS.rds
2597b7a983ce1b57bc56185b70b29f9a *man/LD.wiki34.Rd
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895cb44a26003342743546a67fe9a4b7 *man/snp_match.Rd
259c6f6aab79078691bf22d310329d88 *man/snp_modifyBuild.Rd
e330ce1f0c52aba3258556825c1026c8 *man/snp_pcadapt.Rd
323ffcf6106aaacf59a839c4e263d89b *man/snp_plinkIBDQC.Rd
f9af2bc7fd961feac9f8818ee7546ba0 *man/snp_plinkKINGQC.Rd
134a9dab3f2f5fc2c8e00ccdc3b2743a *man/snp_plinkQC.Rd
4a45e73d3116f62aabaf15ee8a592148 *man/snp_plinkRmSamples.Rd
fb68424903fc527e04d606d33cbbbb0e *man/snp_qq.Rd
d1c2a8cc5343b38cd624f394d1937078 *man/snp_readBGEN.Rd
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8fa12435c1a3ecf47db0b632999a664d *man/snp_subset.Rd
04b219c6ac8832c89071c1df59735510 *man/snp_writeBed.Rd
4d19772f786624138589034cb9e0bea6 *man/sub_bed.Rd
9674c5313b53588ab99e0d1ae0c91b42 *src/Makevars
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3891cfdd8ec085080cdd5922253effc7 *src/bed-acc-xptr.cpp
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311274d450d83277ee6e652555976c73 *src/clumping-bed.cpp
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251b52974da85b4bccadfacb036f3a08 *src/copy-subset.cpp
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4627f2ec100ed0ecd3efb79c85ec99cc *src/multLinReg.cpp
3a33b63ff197c0e01c2d99d9229a90cc *src/read-bgen.cpp
5eac9383dce00b4a368ca78c57b8fcc7 *src/read-plink.cpp
12c039da8d64e67c055352fc720e7e84 *src/write-plink.cpp
d1b004762b6904147d0fd0fd890a68d1 *tests/spelling.R
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4141b9b2cabaca4cf55021466e16c727 *tests/testthat/test-7-OpenMP.R
