4e9922f35c8ee6f65c565e351f0c8733 *DESCRIPTION
6d80c6b208215588d572e9798adc4113 *NAMESPACE
3299db43abd8cc0e8f6112d895f87d3f *NEWS.md
5f9dd26f12c3e29d5f1cb2335549cbaa *R/MAX3.R
1c5ec5df0c1012f09f994f54f916ed94 *R/PRS.R
29f8eb0f59a5798a025a3e5f1e5ec157 *R/RcppExports.R
626f24ef5bcd74cff3f57bb9c29b1d19 *R/SCT.R
5591cbc0424a86dec0f221b6efea15a6 *R/apply-parallelize.R
9f379373843d32c954a5ce919156571f *R/assoc-bgen.R
d4727b5683cc4f3881c7c858e31faacc *R/autoSVD.R
a308ce89ddf873419df235048e5b402b *R/bed-class.R
f4903e7e96487fb3fb4afb7ef81f8dad *R/bed-mult-vec.R
4aaac89926e1c9878d848c3f679ec27c *R/bigSNP-class.R
f20f3b03ab409b2b8547fa5453150ab5 *R/bigsnpr-package.R
5e04f3e75e18381cb6b701e336eaa0dc *R/binom-scaling.R
eb4574d2d03d77f9090aa88612aca25c *R/clumping-bed.R
26728e857ee7049ee51ff88cf098fdf3 *R/clumping.R
9fb673156fd4692a110074108f23a6fb *R/corr.R
b63c259ed889558a64b0292f0be8c83b *R/external-software.R
e9a7a8cb1028cdfff1ca6f12d953c135 *R/fake.R
4efe9a31b0134687d8c2a8b3e20ef545 *R/get-save-infos.R
2e486975fd0ea5eb2af1ab655dbe1d77 *R/impute.R
04ac851c758ef3629ce6ccc9f70ba51e *R/man-qq-gc.R
e2b5d34ad67f0988979a29272d953049 *R/match-alleles.R
b96ea0aebe806feaa7533ec4455012af *R/pcadapt.R
2010b3f4315f3be1d0cf033e883d5cbd *R/projectPCA-bed.R
a09662ffb104e2701ec5409e85f2cf79 *R/readbgen.R
9373191695670765e2dc18b556859656 *R/readplink.R
ccffd86cccfbe2712e8c3fb94ed1f89f *R/subset-QC.R
586fcd64db0fb04910a880ae1e59bf11 *R/tcrossprodSelf-bed.R
7e49527acca52e12902b49a3eac71da0 *R/utils-assert.R
7c5437655da8ab94b772c1a62bba25af *R/utils.R
74dd07ba5f1f2d78ebf5ae6bdec1d688 *R/writeplink.R
85e07a57369653e4081317e630615113 *README.md
b6a17477d45da8d606bd64c09c0b2932 *data/LD.wiki34.rda
5f766059703af6e6a9cdf11b73174638 *inst/CITATION
cd7f7ec8628666af7482b9a0cb3966a2 *inst/WORDLIST
5cdf5da8fd1fc9e6593dd582e2a66430 *inst/extdata/cluster1
75aa2415b3d4d90646e7ab62cac04183 *inst/extdata/cluster2
b755fb8b6e309a766908dc94302446c9 *inst/extdata/cluster3
1693159abf1329e3d8a755e0afd9463e *inst/extdata/example-missing.bed
2354c8ca3b35e624d72d59b731810611 *inst/extdata/example-missing.bim
6c814e0efd97822a06bf40008cba0519 *inst/extdata/example-missing.fam
7960ea9d91206f4943b62064d8e3cd99 *inst/extdata/example.bed
5865c5beb293af9e15ba050c98c907a3 *inst/extdata/example.bim
9e49838c4ef9572475057ec487f2475e *inst/extdata/example.fam
6564c95de7bc7fec80f71407c6764f93 *inst/testdata/before_readonly.bk
4a115902f68d3c8ef0f61cc841562c15 *inst/testdata/before_readonly.rds
396e1a460b04cb8d3eae307a8a9b9900 *inst/testdata/bgen_dosages.rds
b30b0319407f06176015b5430343fba6 *inst/testdata/bgen_example.rds
733bec288d7a1cd8dba4e2f1d8bfdb86 *inst/testdata/bgen_variants.rds
337eac82fed3ecdf779883f2c1b11ec7 *inst/testdata/bgi_example.rds
3a9fb2906a074338f6b40d185dd4cb43 *inst/testdata/clumping.rds
229ce928a2dcd8df1efa68dd5c9c4b60 *inst/testdata/example.ld
f205e0168f49ded5dc0189515695ad54 *inst/testdata/pruning_ct.prune.in
f49282ad3af26f3d4f016361c2a22d48 *inst/testdata/pruning_kb.prune.in
2da201de303fc52ed72a9540c9baf68a *inst/testdata/pval.rds
9e029cb629e96ec9f36dd127b45eb110 *inst/testdata/scores-PRS.rds
2597b7a983ce1b57bc56185b70b29f9a *man/LD.wiki34.Rd
f45e8edbe579ff05440a9d415ef16927 *man/SCT.Rd
e07e7e830a41292e32238ad7a541949b *man/bed-class.Rd
45689b590657c9fb89c1dd4bf031e05d *man/bed-methods.Rd
f1fd129d8aa9d251648813afac434295 *man/bed_MAF.Rd
d5de517d553349c470c0071710116ac9 *man/bed_counts.Rd
739904d7c4fb98b04c13ab2af34488b5 *man/bed_cprodVec.Rd
0448fc66b8c28047465102f557cb61fb *man/bed_prodVec.Rd
aafb1871d63c5aa45f069461484ec383 *man/bed_projectPCA.Rd
75ebda8128b5e2660f69762f1db4cf98 *man/bed_projectSelfPCA.Rd
32c11f426b10b2b64d677d4d6ac09dec *man/bed_randomSVD.Rd
50ae681cf83c3546b0e847ada5c7ebd5 *man/bed_scaleBinom.Rd
a9f8c5fa2d47768c82f490efc237eb43 *man/bed_tcrossprodSelf.Rd
42d2188ca24221028c08dbe41a6d1e27 *man/bigSNP-class.Rd
c64005fc2a89ae0596aa6589787cb3d0 *man/bigsnpr-package.Rd
66b7372075fc24caff8bdef3f1e8c858 *man/download_1000G.Rd
a1282d03f0177efaa5a17f110b81fcb3 *man/download_beagle.Rd
10b13c9f9bd32afb585ccc23a8373733 *man/download_plink.Rd
6b64421ea61d0495bc2a21c2f8fffb52 *man/same_ref.Rd
adaf7d448b48f473f0394c3f4593d489 *man/seq_log.Rd
e42345f75dce7e41147ce3cf9138c3ef *man/snp_MAF.Rd
d902e5ad86072d33a00368549b24061a *man/snp_MAX3.Rd
b80b3f003b19b445fda66c561d542eb0 *man/snp_PRS.Rd
b8778441fd3e674840a2d2e73b603640 *man/snp_assocBGEN.Rd
b74c95a78f59171f8233e3e6c05d2e2a *man/snp_attach.Rd
0b452881af5c309915dd2e0a47def18b *man/snp_attachExtdata.Rd
b26fc57fd274cc875e7ea7dbfcb07451 *man/snp_autoSVD.Rd
44c03f71627f89fade04bf431a9711a5 *man/snp_beagleImpute.Rd
462c8879398302f8f765ce3c51a6464f *man/snp_clumping.Rd
c8981519c330d7800cd4082b3b1f9699 *man/snp_codes.Rd
12fcd187b6d6f416e6c3806c893dc101 *man/snp_cor.Rd
337cb8e7afc7cd8aea72ad4f34175a8a *man/snp_fake.Rd
799c3ba973067961b1928e15e5aa10e3 *man/snp_fastImpute.Rd
e1856003f0c2337cedd393e06b1d8781 *man/snp_fastImputeSimple.Rd
83e2f4d5b49504a8777f6219b033cdc5 *man/snp_gc.Rd
f073d495b4758e8ddc21cc5e5c10d719 *man/snp_getSampleInfos.Rd
93f9b3cde77d42fe5bf5b5ade791793e *man/snp_manhattan.Rd
895cb44a26003342743546a67fe9a4b7 *man/snp_match.Rd
259c6f6aab79078691bf22d310329d88 *man/snp_modifyBuild.Rd
83314a5a9884b1883a3ac1ab2f547df8 *man/snp_pcadapt.Rd
323ffcf6106aaacf59a839c4e263d89b *man/snp_plinkIBDQC.Rd
f9af2bc7fd961feac9f8818ee7546ba0 *man/snp_plinkKINGQC.Rd
134a9dab3f2f5fc2c8e00ccdc3b2743a *man/snp_plinkQC.Rd
4a45e73d3116f62aabaf15ee8a592148 *man/snp_plinkRmSamples.Rd
fb68424903fc527e04d606d33cbbbb0e *man/snp_qq.Rd
d1c2a8cc5343b38cd624f394d1937078 *man/snp_readBGEN.Rd
e58f458d50dfd265e96ab7046dd47dd1 *man/snp_readBGI.Rd
7ccdc76d7829624258076afb6860247e *man/snp_readBed.Rd
446a26da7abe2c4e51373ba4a5aaceaa *man/snp_save.Rd
ec43cf68518ac89cdbea039104894f12 *man/snp_scaleBinom.Rd
0ea3bd7aa79ff99cd88aff5504350c3b *man/snp_split.Rd
04b219c6ac8832c89071c1df59735510 *man/snp_writeBed.Rd
4d19772f786624138589034cb9e0bea6 *man/sub_bed.Rd
fb7fab5b76012ddf1ef104426a021a48 *man/subset.bigSNP.Rd
dae4da50960f9c2bc021c2840e168e7d *src/Makevars
cdf500fee90ab1ab4fea6d44dd7b6625 *src/RcppExports.cpp
2e61d4bc33e1919745a12d188e1dba55 *src/assoc-bgen.cpp
3891cfdd8ec085080cdd5922253effc7 *src/bed-acc-xptr.cpp
ae7b6b826faa89b69af0d12fbfe79ded *src/bed-acc.h
5a41ac18c5fdd9e2dc30ab80f604f257 *src/bed-fun.cpp
572b181789b675a3af97f6f8f0e63351 *src/clumping-bed.cpp
e96be93fa1771aa46f4723156290c81f *src/clumping.cpp
44e78c49d77d1bc1f5f7ca2ca1db877b *src/copy-subset.cpp
1483b3ad3b412ecd46295a586b7c69e4 *src/corr.cpp
ae691592cc6a45142a13e1e12b19666e *src/fstream.h
de5bcb2154b9515576848369d5d54eb7 *src/impute-simple.cpp
626f73b836e184be105eb97e352c0249 *src/multLinReg.cpp
3a33b63ff197c0e01c2d99d9229a90cc *src/readbgen.cpp
2de378b122789d2cb9843274aa47be77 *src/readplink.cpp
d1b004762b6904147d0fd0fd890a68d1 *tests/spelling.R
25135cb11e522c9e970c479414648c9d *tests/testthat.R
6f17ed4e91ddfab495be54390b958f78 *tests/testthat/helper-init.R
268a14c5036f7b448639dfd5a947b202 *tests/testthat/test-1-attach.R
6368dda776a91d28bc19062419023e06 *tests/testthat/test-1-fake.R
bb6193e838efe128b0674bfde495db98 *tests/testthat/test-1-get-save-infos.R
13e4ef9ae8cfdf407b5aead2eb20eec3 *tests/testthat/test-1-readBGEN.R
0b41c8e59e6bba6ae8ae20c807bf03c9 *tests/testthat/test-1-readBed.R
9173345de61082216f6794feaf0da8b3 *tests/testthat/test-1-subset.R
2295775c4f9c126fda16758f2e3f446a *tests/testthat/test-1-writeBed.R
8928c08ec4a8b02cde141c29272be6e1 *tests/testthat/test-2-autoSVD.R
d6426fd422b8f81e23aab78f9b9400a1 *tests/testthat/test-2-bed-clumping-SVD.R
00136168894a2028f71b5a60b6a7b2e0 *tests/testthat/test-2-corr.R
6eb617b918a53f8a5afa4d4a9cc4295f *tests/testthat/test-2-pca-project.R
f5e2a67e44753ee9b2c684dae0b901ea *tests/testthat/test-2-pruning.R
1090bbf3ab4fb5365a2e07634779448d *tests/testthat/test-3-fastImpute.R
4f0cb78997fcded9af79e75ddef2f4b3 *tests/testthat/test-3-plink-QC.R
5073a0a122bb00199f86eb4375e5b590 *tests/testthat/test-4-MAX3.R
1e37d356da5ebf9183a3734ea33fc97f *tests/testthat/test-4-assocBGEN.R
e89450f87fdd52fd1ead9601ba0232ad *tests/testthat/test-4-pcadapt.R
f8d8624914d9b78da243069471d75f5a *tests/testthat/test-5-bed-prod-vec.R
aa9907b8f71cf9973f75c4ac5f826505 *tests/testthat/test-5-match.R
d556ecc88e2dd174f9a59c670e839908 *tests/testthat/test-5-parallel.R
38d2f94364d514c65f2ce123e5803d18 *tests/testthat/test-6-PRS.R
19de8548b5f8be2fab7dfb977af7fc98 *tests/testthat/test-6-SCT.R
