9477675e329048a5e19c5b54516be589 *DESCRIPTION
55fd9a7bb79e8733dfe38bba1cdd6014 *NAMESPACE
d841ef6744aea813a366723e3a676ff1 *NEWS.md
ed179c2ceeb7196248c984425b1482f4 *R/GABeds20200624.R
45c9e6cecce09edf7f7ce6e78efeb669 *R/PackageData.R
0d0a6ed6ee64412eb41ace791286b312 *R/aggregateSimulationReplications.R
88321640e70d42196ff3338aebeeeea4 *R/babsimHospital.R
81f1df125c03dda4a5a30b9548aaffe9 *R/babsimHospitalPara.R
397cf9634c426799ee0f42b2caa49c46 *R/babsimToolsConf.R
732cf1890e7d74c2fd5027095284ec95 *R/checkSimPara.R
6b445616808ad928d3ed7236eefc4902 *R/class-BabsimCaselog.R
3ca87407862b32177933328b235f6c99 *R/class-BabsimCases.R
43d5eda5da7b58cec96ea563e9b3bad7 *R/class-BabsimDailyCases.R
98cf96e6ec0fa54dd0068e09bbf6effc *R/class-BabsimRkiCases.R
43fa7449ee27c595cd4ce5434f0f5b70 *R/ensureRangeOpen.R
7ba5dcee7811a0f61272a60417edb154 *R/envToTibble.R
21a52b77a4bf5e30a0359b4c0a3fc05e *R/extendRki.R
c501ab2ca0ca237b9f193d27614d8354 *R/extractSimulationResults.R
611488e0bc60e611ce16531433d2f839 *R/fitExponential.R
2dabe020e515e8d3cac4797b6ff88e12 *R/funOptimizeSim.R
febdf446e8d7eda42dcdd72259640860 *R/funWrapOptimizeSim.R
3bd1cf6479e2ebfcc9e2eb09dd26dede *R/getArrivalTimes.R
4a034017ef8be5d2d5553346f50bca0a *R/getBestParameter.R
ae0f2f22184bc487fc549f2f734c3378 *R/getBounds.R
a5fd5aceb9f94e9514e8c1ee1266fed0 *R/getConfFromData.R
47a73c6faf05e5801012b9f93f0a3143 *R/getDailyMaxResults.R
77741bd624d8b8eea2028dfbdf9b8e01 *R/getDecision.R
828a92451aca071c2773d8ec95bdb3b0 *R/getDiviLinks.R
de3b0e7dd1ce34ab784a92793782c072 *R/getError.R
ee87cae71284d96debf4ec6832070e63 *R/getIcuBeds.R
ad82b95fbe0240dafdddefe8abfe83e1 *R/getInfectedPerDay.R
a093cea5b0e272d1c77548d1ef95f13b *R/getMatrixD.R
a7f9c8e42aca86ee846c66a3c889dc56 *R/getMatrixP.R
19b5f9f4ca84164ca13520781943f7fa *R/getObkData.R
68523de9bafd9b0d12e63c4fb46880dc *R/getParaSet.R
dd0b2172d4a796da84bdb4c4decc6143 *R/getParameterDataFrame.R
2800af7f4808cd2c3ffa58e47af65efb *R/getParameterNameList.R
b94ff94f18fb9ff878c7a14f9aad859e *R/getParamterName.R
8367045c289bacf570281670d7d21551 *R/getPeakVec.R
01f685913c9c28fb688b039630c890d6 *R/getRealBeds.R
7ec82836e58f8301a358d38acbdc1867 *R/getRegionIcu.R
647232a8b7ddaeaf89a4e9aebbc54d24 *R/getRegionRki.R
c2549cae8f662a5953c187a03d668f7e *R/getRkiData.R
e4d7597ec4ca4bac5ff9eeae27b2fa2a *R/getRkiRisk.R
54f2dd5b4123a73ed9e643d9ee01b4d9 *R/getStartParameter.R
3ca99a51a83573715b2b94075d45833d *R/getSyntheticData.R
4bbed7077a8de5fdaf88882c2c14300f *R/getTrainTestObjFun.R
24d41ef09919d98b10d22e388574f108 *R/ggVisualizeIcu.R
810e086727148f435211be9440bfad91 *R/ggVisualizeRki.R
c786ea9112651690f70434bb27dd1802 *R/ggVisualizeRkiAge.R
15686cf8212ccd154f2172ce6f3e9e82 *R/ggVisualizeRkiEvents.R
33fcaddc4680c2a5e107f936d6ecc585 *R/ggVisualizeRkiExtended.R
1c2cba9f8e829e503f9d59cc943cc635 *R/ggVisualizeRkiExtendedDataCalculation.R
abc342c289a4b62b839fbda186cc1938 *R/icudata.R
cf9d71efbda06880bd1281681fd8a733 *R/mapAgeToAgeGroup.R
c55db67b5b69eccbefd0fb4b23f415d5 *R/mapAgegroupToAge.R
f5c6203e75039e092b8a30cd979d955b *R/mapPToPara.R
e298a32e3af9a21c390828ef0bc55e1d *R/mapXToPara.R
8a493b1829bde3181ac0c0268ca7f86a *R/messageDateRange.R
f8ba1625cc08efe54a779fa78fe82444 *R/messagef.R
87f58436d8d9ff11df968ed3d526501f *R/modelResultHospital.R
3852073193859925cc4193f75929518b *R/plotDailyMaxResults.R
59bec581ca4e0a10993488c1513317cb *R/plotPostprocessedEnvs.R
da5e14e8d0fdded69f7b009112dc26c1 *R/postprocessEnvs.R
083dc9be42c2979ac6dd5489bc6b349c *R/printConf.R
4b266b4013b5131272145f975ca57d64 *R/rkiToBabsimArrivals.R
91ffc58b072fc2c357ef2de2302269fc *R/rkiToBabsimData.R
66d3977b4c603c134b75f67facbe5898 *R/rkidata.R
8871337c0a0cb66310fbd62648678fdd *R/rtgamma.R
06a16f0410eac17c4099cd02e1923966 *R/runOptLocal.R
6a2e91556419ede87a9804ce55f1fe1c *R/runoptDirect.R
e2d5e757167e5491864fc256e51958db *R/runoptUK.R
12df3d7bf106d176686638e6eb48306a *R/skip_if_quicktest.R
6fb987f3fc542fb84874b0b4b0c1f8df *R/smoothParameter.R
213e293019d15b6cfcfbdf717946b5c8 *R/softmax.R
198b7107291cc2eb2964f8b2135dcfe2 *R/switchRkiRefdatumToMeldedatum.R
209e842e03c69c10a9208405bac02718 *R/ukpara.R
9acfca091356e12cd2105ab4fb1f047f *R/ukpara01.R
1766ba5446907be74351174225379dec *R/ukpara02.R
35af5bc9f05376b29e81ff18d88bae7a *R/updateIcudataFile.R
9a66a6e2ae4a13731921babb4c2720d6 *R/updateMatrixP.R
94ba9de9847cc7221298f7e27ea66bfb *R/updateParaSet.R
550ae0cd00fe0e5e0e10b02f865c4aac *R/updateRkidataFile.R
27dd70085f9db0a8b3d2e831a4c85c56 *R/visualizeGraph.R
8d80b8be080282670ea2d3d49a41ab25 *R/visualizeIcu.R
0fd3c30314aec0ca02207b69122a84db *R/visualizeRki.R
e0cd90c3023cfefc41e8c9cda316da93 *R/visualizeRkiEvents.R
eab0120493b511b6ebdf367a2a3809f0 *R/visualizeUK.R
d96871e7ea7fe41b0cb569b6bc7a8440 *R/weighted_rmse.R
ac296c49738b0cc4720dae5e655acd73 *build/vignette.rds
6f7e74c2d3225b80c9f21cddadf33451 *data/GABeds220200624.rda
9cdc3efaab997bbc8ea988dfd01652dd *data/GermanRegions.rda
17afc7fe78f3962c4653dc501f95e5f3 *data/dataCovidBeds20200624.rda
12ddf39cb5bfe5ef201662393d9c47e2 *data/dataICUBeds20200821.rda
8611c87d2613b3f06e0bbf577d32e2d9 *data/ex1InfectedDf.rda
72c364b5c67faa749948478f1b5f768b *data/icudata.rda
a5def80fa8f9347839fcf85de0e7d46a *data/koelnarchive.rda
990318fc2fea96bbfd8a04c11673ca86 *data/nrwarchive.rda
c89463981cf7a9744ecc058463dd3b5f *data/obkarchive.rda
820f53c3d439d8928302ce7e1347cc51 *data/paras.rda
c2cd55ec0e0bddcbe3aed0bb59ac392f *data/rkidata.rda
e30a7c5aab8b64d73e3c240f8c663a2d *data/synthpara.rda
b510d30e89b11361e6cd8a5e0f604e1d *data/ukpara.rda
30b9634d005478254e08c9a6b71b98a4 *data/ukpara01.rda
f1df56869e62e1a4052d5839b3b9bbce *data/ukpara02.rda
79124e5e28603897e9f5ce75b7de7eac *data/vaccineCounts.rda
4c87526365da6be57f30ad59a760aba7 *inst/CITATION
ac539573a7cc8ada9555cfe42fd608f5 *inst/COPYRIGHTS
aef88dfdc002e2d3d93e275cc38f80a2 *inst/consoleCallTrialScript.R
f70820a321ce1356aac545aa47488243 *inst/doc/babsim-vignette-introduction.R
5582bcb4992db17eaecfb70cbd9c9d9c *inst/doc/babsim-vignette-introduction.Rmd
08cb3cfba7061a69603b321a397971df *inst/doc/babsim-vignette-introduction.html
4e49f918dfdc1388f0fa4de8fad82ff6 *inst/extdata/CovidDataGroup1.xlsx
3b890d30af825ed8576551466e99f452 *man/GABeds220200624.Rd
5bb55cb206c3bb785a829734a19aa550 *man/GermanCounties.Rd
ac0b2dd0d56aa31a997bbb6c5b4e30bd *man/GermanStates.Rd
d382435e23a37ed39bca379938878b4f *man/RiskScore.Rd
007e2de3fb3b07005786b0c9b12eb12b *man/aggMax.Rd
1fc12a3ca35040ca9105517ff530d7ec *man/aggregateSimulationReplications.Rd
ac42c86694cdaa1fd4586761cebcfaa2 *man/autoplot.BabsimDailyCases.Rd
f52f070b8a80b979e7cd4d22d91d2aaf *man/babsimHospital.Rd
0a8320fb11097b1ca84384d421eb98d7 *man/babsimHospitalPara.Rd
2d5635d4eff15e02c03214fb0e788043 *man/babsimToolsConf.Rd
f55a4e5c9f95a7e1471fd01affb3c469 *man/checkSimPara.Rd
c0760e3e5df9b0430d5fecbe9e57af67 *man/checkTestConfig.Rd
ecfb3b97d8eba814dc09de04d3a5a0e7 *man/checkTestData.Rd
d0a2d957789558e98a8a96fa9439bc46 *man/checkTrainConfig.Rd
104d2f3ca1483667c808e8cc2a926a16 *man/dataCovidBeds20200624.Rd
6cecda887e0d79e5d0cade786371850d *man/dataICUBeds20200821.Rd
1cd7a5778ad1461b199562f4b5d20ac6 *man/ensureRangeOpen.Rd
1a12a1a2481ae319121699d2d2e0030b *man/envToTibble.Rd
af1c737132ef1ae832925ae474d1c768 *man/ex1InfectedDf.Rd
dedeac90236c7c01f22435c4edfba692 *man/extendRki.Rd
16f3f2379cd394139413021b97903c49 *man/extractSimulationResults.Rd
190442c678b46a41e17c078b9f56af15 *man/fetchRkiCases.Rd
e8b813c6629feef76e9bc458715f3e42 *man/figures/README-simmerplot-1.png
75be38c263aa324569206b192e123f49 *man/fitExponential.Rd
348b3b6d03732f85a799598d205a9be1 *man/funOptimizeSim.Rd
26404ac632e036729110ffc0da8dcfb7 *man/funWrapOptimizeSim.Rd
4149e5ff5047051ebaa18156371424f1 *man/getAndCheckTrainData.Rd
4651b8549b0bb37ba52665a489375303 *man/getArrivalTimes.Rd
5341975e954307b7cbf38abc8056755c *man/getBestParameter.Rd
b3bfebf5596c8ad8c2244a2cc9c0e7a3 *man/getBounds.Rd
2fe4d11b164d4ed8865141a395b2340d *man/getConfFromData.Rd
82bb8497ddefaf17a010bf3ae2d45348 *man/getDailyMaxResults.Rd
0bcbf4eccf466ee2f51e01ba48cfff1c *man/getDecision.Rd
ad6955516324e936d92c9bd545016f20 *man/getDiviLinks.Rd
bead40330d4708b1bad44de99c96cfd4 *man/getError.Rd
898fb1c295cd5b86e5f866592ca19421 *man/getIcuBeds.Rd
e2c9fae9423968df0cf3eb588307cd05 *man/getInfectedPerDay.Rd
2efb919721b28ed731c67e12e3a543d2 *man/getMatrixD.Rd
c26294e44b07073c9f3f5f4eabea44c9 *man/getMatrixP.Rd
79545c6c44ff2a4b4e56c428d0a577f2 *man/getObkData.Rd
e263d70164a289bda0f2a0d22d7c6cc8 *man/getParaSet.Rd
a2942c26585c4d227364c273345696d1 *man/getParameterDataFrame.Rd
a98660293e12b2c8065138bc961d5a12 *man/getParameterName.Rd
a2e83b66ed29b1b6d9965a639c716488 *man/getParameterNameList.Rd
c634be554ade19c3217736773ec6698f *man/getPeakVec.Rd
7331d59371e45f15f832a06f8dbc135f *man/getRealBeds.Rd
88381d916064174438d9f03283bb56f7 *man/getRegionIcu.Rd
c66cb3a7e1890eb429b5a16e95c4286b *man/getRegionRki.Rd
81a9b4f7d75f72fa9fe9477f3ebac5a4 *man/getRkiData.Rd
6b6ed50a461bfd4174215a41143802ef *man/getRkiRisk.Rd
efe830b53e9d42085539c70f0e29ce44 *man/getStartParameter.Rd
414ddb29493e0cbe0f4be48bd4e62d53 *man/getSyntheticData.Rd
9de81b9870fdb65b29678ba40730d3e9 *man/getTestData.Rd
0a35d6e8f390e75f3e12e6288d738c36 *man/getTrainTestObjFun.Rd
22dcea2d8ce4ba4e2cf2a6a34f2d6754 *man/ggVisualizeIcu.Rd
c044dc66eaaf21671f6388d94dbf612f *man/ggVisualizeRki.Rd
de9ac5061b3cb0d012a5cae7eaa155c0 *man/ggVisualizeRkiAge.Rd
947fa1a064a9f0f08d453acc3f2cfbfd *man/ggVisualizeRkiEvents.Rd
d10b1bff9ecf4bea8765382ae36bfb71 *man/ggVisualizeRkiExtended.Rd
716d586b2c1ba8cfe5fb6b16fc1ce3ae *man/ggVisualizeRkiExtendedDataCalculation.Rd
abd72028ef669c365ccd3f36abba2b90 *man/icudata.Rd
bb6b584eae033adf80ac1b89d178e06b *man/koelnarchive.Rd
bed5d08e6f73b04a7ca7f84e50b12fba *man/mapAgeGroupToAge.Rd
a27805921e7e57d6ae9fd6f2169ef3d9 *man/mapAgeToAgeGroup.Rd
955f9a04d23ad645e34aad8345bf8827 *man/mapPToPara.Rd
cfcea36b7e99c61db8684ef1b481015c *man/mapXToPara.Rd
1c9088a5f9150b965890c8423162c0ec *man/messageDateRange.Rd
65a701a543c25fd79b612cbdbc9e65d0 *man/messagef.Rd
82b8358b428b2f6d5e22fff157b011d4 *man/modelResultHospital.Rd
350f294ac7de27fecf1e7bf48e874adb *man/nrwarchive.Rd
12ad3ad65442d9e7c08fe0bb7a7d93c2 *man/obkarchive.Rd
d81ddabb3469a82ea6915d0540c9ea36 *man/paras.Rd
a5c79aff9fac7ce824f7a028ca1120bb *man/plotDailyMaxResults.Rd
9ac17b32da70c1bd0d20e70fddfc8c93 *man/plotPostprocessedEnvs.Rd
cdef10c62fa43c4df79c77b305413f91 *man/postprocessEnvs.Rd
ee33d82aaf8adc6847ddcd49e3b5ca78 *man/printConf.Rd
67271afc69ce3e12c517f2656a068784 *man/rkiGeschlechtToSex.Rd
cba6c6184c300f35285990b2293017c9 *man/rkiToBabsimArrivals.Rd
676bee5779a314b59d98c2eeb3336553 *man/rkiToBabsimData.Rd
f7c2a3acf897b0188fabc4951e30fa11 *man/rkidata.Rd
2c18d118384e4525c0dc8977e6a79529 *man/rtgamma.Rd
b638f70a635d9eb5e0c20b6f180a2d87 *man/runOptLocal.Rd
690091465a019ecd6e6bcc705b983e21 *man/runoptDirect.Rd
f1044e7d8162c31083fc4aed1d71a70e *man/runoptUK.Rd
2ab6577998f95fdad95ea08047dae401 *man/skip_if_quicktest.Rd
3d8d9e3e2bd927da1f088da9f2ada33d *man/smoothParameter.Rd
574ba8061f8453f0e3f5f81f90e6f79d *man/softmax.Rd
e57d55941497986c280104ff5dd39c41 *man/switchRkiRefdatumToMeldedatum.Rd
1de36535851d675b612d2cd71f803d98 *man/synthpara.Rd
96600a7acdea2957ec1d6cb80abe8ee5 *man/ukpara.Rd
256624a6b782b59ae7f71712c52bb99b *man/ukpara01.Rd
91267e89ba53858a8d4cb12af6a1d3ba *man/ukpara02.Rd
bfdd1446b9a97d1ef36ca55a51bdb402 *man/updateIcudataFile.Rd
3f94cedf14dd7d400c2ab31955871663 *man/updateMatrixP.Rd
6ecfb39e903fc88b5e1443a82f5b302c *man/updateParaSet.Rd
0843dc2083aee00559241c120cde6cdb *man/updateRkidataFile.Rd
02e9db55ad3a7caa0cf31414f897c459 *man/vaccineCounts.Rd
ad64894bd82a28ccc58298c6e5fff7a9 *man/visualizeGraph.Rd
8f59feb80fbf8b62f40a2d36e9490cb3 *man/visualizeIcu.Rd
2b393f88e74471e57b4f1c9973110d27 *man/visualizeRki.Rd
aa5e27ab2d077ca3721f366396fbec44 *man/visualizeRkiEvents.Rd
16bde2c5a95072b76fc9832673ef8b28 *man/visualizeUK.Rd
63285c1ee0fdb69603768047e4612b11 *man/weighted_rmse.Rd
e73b47fdaa11260640e6c5154a9fc4e0 *tests/testthat.R
be379e6b7677b6677a8a9201bebbe9c2 *tests/testthat/test.TrajAllStateChanges1.R
dfead431773e05f79cf2c426dfcf2bc9 *tests/testthat/test.TrajAllStateChanges2.R
95c2b8a6de0b1abe6d84a44f1a29b969 *tests/testthat/test.TrajAttributes.R
6ba8b984a3046af8118e37d3bc29dda0 *tests/testthat/test.arrival.R
accb1e1df0223f43d17efc7fdd868f76 *tests/testthat/test.feval.R
aff49669e4253bdf61354860ceb3fe25 *tests/testthat/test.getDailyMaxResults-ICU.R
79d72d180679b0a793762a0f651dffdd *tests/testthat/test.getDailyMaxResults-OBK.R
badacc65eb939d96d6d8d54b6cadd053 *tests/testthat/test.getDailyMaxResults-RKI.R
8e425c27c243e260dcc3f3000eede521 *tests/testthat/test.getError-ICU.R
ced6a76bdae1e4d980aba26609af8623 *tests/testthat/test.getError-OBK.R
38a063f3f6adbf332dce50b93396982d *tests/testthat/test.getError.R
9d5e415947e0df84406c11743eed053f *tests/testthat/test.getRkiRisk.R
a089549bf4867eb43b0e04d0a4dcd7e0 *tests/testthat/test.main.R
2ae4a2de88c838e759075edd55c68c08 *tests/testthat/test.mapAgeGroupToAge.R
2da20372e5112ae132bba1d5e37da223 *tests/testthat/test.parallel.R
4dade427cf4673add38890d665008926 *tests/testthat/test.rkiToBabsim.R
278a160c55b6a9f50cd12e1173274c7b *tests/testthat/test.spot.R
511a3a321d038adf40a4dc5788da3436 *tests/testthat/test.tools.R
dbed929ed7d876a91a952a2504f1a2f0 *tests/testthat/test.trajectories.R
6da485a0b2eba56d87beb73d5be4cd0f *tools/fetch-gv100ad.R
88a191ca7b7e249aa9b383c080ea0eb7 *vignettes/20200803states.pdf
07cf2ea2081c045dcf46a29be2040360 *vignettes/ForTheExpert.d/20201120states.graffle
b038015f5a7a287404489a88a10d7c6b *vignettes/ForTheExpert.d/20201120states.pdf
3cbd57fdfb8d17b8a3fa2384b02d51a2 *vignettes/ForTheExpert.d/babsim-vignette-NumericalMethods.R
f07c625cb58f3a56e7f5bedfce7be5b7 *vignettes/ForTheExpert.d/babsim-vignette-NumericalMethods.Rmd
09429acffc2e58ec351d0090617dcb95 *vignettes/ForTheExpert.d/babsim-vignette-OBK.Rmd
98ade330287976f1cb223fe583747e84 *vignettes/ForTheExpert.d/babsim-vignette-RKI-nowcast.Rmd
f46097075c76f1f490ac2de9245cc3e5 *vignettes/ForTheExpert.d/babsim-vignette-simmer.Rmd
80b514ca9a403895ecaaebcbab953f60 *vignettes/ForTheExpert.d/babsim-vignette-synthetic.Rmd
af0c4b2cee111ea7d6ba466b3a7d1522 *vignettes/ForTheExpert.d/babsimProzessFull.graffle
e8b315d9a8cba93e20847e998d1ee533 *vignettes/ForTheExpert.d/babsimRkiData.graffle
3d55e6b202b25777d4715fe361006764 *vignettes/ForTheExpert.d/benchmark.R
8393d9b3ea03d2cb255c2f26f8e896cf *vignettes/ForTheExpert.d/trainTestData.graffle
11f3beb9210e342ddba917094b226de4 *vignettes/ForTheExpert.d/trainTestData.pdf
5e92441cea0c3719d41ed74e1e1b4da2 *vignettes/ForTheExpert.d/trainTestDataNoOverlap.graffle
5f2c3165a6d37755bfc32285b409fbd9 *vignettes/ForTheExpert.d/trainTestDataNoOverlap.pdf
5582bcb4992db17eaecfb70cbd9c9d9c *vignettes/babsim-vignette-introduction.Rmd
3a97a9bd1ce187edc3215425f40f73d7 *vignettes/babsim.hospital.sty
d4701b475e678d298147db059cec145e *vignettes/logoHospital.graffle
6fa70b37a533b0e9dde9502d060d49cd *vignettes/logoHospital.png
272545543be51c8191523d004098c040 *vignettes/sampleData.xlsx
