86e1be7863f8a656bd7ae1f53c51f13c *DESCRIPTION
73f9645a546038e1992a99cf59017b0c *NAMESPACE
9400b3c4ffcd01c344a61387d7131750 *R/000.R
646155cdee987c9e73189073bc88c53b *R/006.fixVarArgs.R
dc193ab3c1d3cf0b5cd9400752585fa5 *R/009.setup.R
94bf454cc3e6953b6feb80599602b47e *R/999.AromaAffymetrix.R
f8432ab6980dd3ca0c6f967082ce5958 *R/999.DEPRECATED.R
dcb0e44d79e9859ee6006eb8c70b2837 *R/999.NonDocumentedObjects.R
42e2ff0a085b6cef63c0678cb6b9c5df *R/999.package.R
6af401f75860403b7ef1bec61a5e49b5 *R/ASCRMAv2.R
2e7f6a64925b09b07ca397fae09b08d2 *R/AbstractProbeSequenceNormalization.R
ab859a8f905b5dcc9b02cd9ae0408352 *R/AdditiveCovariatesNormalization.R
af938f2ccd21e80f31b852a609ac9d66 *R/AffineCnPlm.R
7c836ad3b9192597c74dffbb0c9180ab *R/AffinePlm.R
7f486e6fb21cdf532bde10425cb32909 *R/AffineSnpPlm.R
0965e981a66502e389ad86b7125ab711 *R/AffyGenePDInfo.writeCdf.R
51e9dd7e43357fce575f22f1acd4112e *R/AffymetrixAptSummaryFile.R
86c9154c1afb5425a6f5f4de9eb6f862 *R/AffymetrixCdfFile.COUNTS.R
c527292c4b93a912a34eeb3179ecc326 *R/AffymetrixCdfFile.MONOCELL.R
dc999943de6ac6744321ac90c64221c1 *R/AffymetrixCdfFile.PLOT.R
3d3c565dbac6c7da4afa60a3b4b64c17 *R/AffymetrixCdfFile.R
200656847d3e9dc14c656b8b9e22e28c *R/AffymetrixCdfFile.SNPs.R
8a3d01958fb97a9231628fa687d2c5d6 *R/AffymetrixCdfFile.UNIQUE.R
872e3d4cdc3043e09032b8ce5e91c72c *R/AffymetrixCdfFile.computeAffinities.R
347db6dbd8046de935bc242660526a79 *R/AffymetrixCdfFile.getAlleleCellPairs.R
f3d5456291a8e8d87c9f6c60888554c7 *R/AffymetrixCdfFile.getAlleleProbePairs.R
65f2591f45e0f15c8f20a9506705dfb4 *R/AffymetrixCdfFile.getAlleleProbePairs2.R
557499d119a069a41fe52d4e880b8316 *R/AffymetrixCdfFile.getAlleleProbePairs3.R
09ca491343ac07c571e6e7b3b2a3be8e *R/AffymetrixCdfFile.getCellQuartets.R
75268394a7642734269bb3a0de93ac42 *R/AffymetrixCdfFile.getProbeSequenceData.R
148c7343d0bae0e8102126899cc42359 *R/AffymetrixCdfFile.getSubsetOfCellIndices.R
d4cf0ead48b8b18522ff46792bb4627e *R/AffymetrixCdfFile.getSubsetOfUnits.R
f081cbe8790f1a19d1f5c451ed8321aa *R/AffymetrixCdfFile.getUnitGroupCellMap.R
3e04a7d9395da5dfff29a5061923a713 *R/AffymetrixCdfFile.getUnitGroupNamesFromUgcMap.R
940ad7f9d151b6dd46166546c2e6ebe3 *R/AffymetrixCdfFile.groupUnitsByDimension.R
2430fab52d3546bb3d77ed7902dd9508 *R/AffymetrixCdfFile.readDataFrame.R
60b8a7b1e946aab9ec84ee8e9416be2c *R/AffymetrixCdfFile.writeCdfByExcludingCells.R
0a3f4053242421028caa42b1913d1b7d *R/AffymetrixCelFile.BG.R
c1778f4fb5ceb6491cf300916fabdf9d *R/AffymetrixCelFile.PLOT.R
a6de375510617428e12dabfca053da7c *R/AffymetrixCelFile.R
493a56b1077b67934f6f2858a4472bfa *R/AffymetrixCelFile.allocateFromCdf.R
ef79b7a95f6fb9431c856a67fbac88d7 *R/AffymetrixCelFile.createFrom.R
b2a18bcdece6dc81b42a906fd79e8190 *R/AffymetrixCelFile.extractMatrix.R
46d0e82ad944fa43f001da59191f1535 *R/AffymetrixCelFile.fitQuantileNormFcn.R
7b48de212e456e4c415d999fde18f641 *R/AffymetrixCelFile.normalizeAffine.R
5906674cfd5f93f4fc7b9895502c7ae3 *R/AffymetrixCelFile.normalizeQuantile.R
589aa832a4a3cb4d2031271c402397bd *R/AffymetrixCelSet.BG.R
659ef412c3f26a15e8f630f44b7d714e *R/AffymetrixCelSet.NORM.R
7a42b3bd212be3887d1bbecbade75ccd *R/AffymetrixCelSet.PLOT.R
60986df2a22cc59a8b476be99eb77be2 *R/AffymetrixCelSet.R
7db2e5a453d6925f89767bba4890b0a1 *R/AffymetrixCelSet.convertToUnique.R
fb8a7812df7b0c95197fe8f8eac70538 *R/AffymetrixCelSet.extractAffyBatch.R
740f84f82fe43b70ce674490ef075e33 *R/AffymetrixCelSet.extractMatrix.R
4a3f890b66fbe3e9bdfc19fd6aa77ba6 *R/AffymetrixCelSet.extractSnpFeatureSet.R
19fb5c29178c76af0d609e895028feab *R/AffymetrixCelSet.getAverageFile.R
c7d07a70cb44cee9114450d9f5b73912 *R/AffymetrixCelSet.importFromDChip.R
1c8dec2c9ad5de8dd01052968d8e1807 *R/AffymetrixCelSet.justSNPRMA.R
01ff15c649a90d8659318e2b011ec9c3 *R/AffymetrixCelSet.writeSgr.R
c5676be05dbc266ccf58083b87f62089 *R/AffymetrixCelSetReporter.R
062f51ec0c233a97bf35257184021569 *R/AffymetrixCelSetTuple.R
6bb551c2e1d1854eec9cea217e477652 *R/AffymetrixCnChpFile.R
87ec95572a87ea5af1c3cce22fc09f48 *R/AffymetrixCnChpSet.R
dc3daab0d19ef92b3a68b621ba4186cd *R/AffymetrixCnChpSet.extras.R
3fe354899512e3c75cebc189e58e393e *R/AffymetrixCsvFile.R
98b9a37404088ea4a52fa40f1cf8c157 *R/AffymetrixCsvGenomeInformation.R
5dabb3205e258296f7a12cd4a56ee9e7 *R/AffymetrixFile.R
39b1912c3aefbc3a68745581e8bf8a5a *R/AffymetrixFileSet.R
dc23c4313d3428faa576597ff0ec7d90 *R/AffymetrixFileSet.getIdentifier.R
0ad98804c68ab7a42314ec725d039a13 *R/AffymetrixFileSetReporter.R
092759c360bb3e19ff37803f3fbd08ab *R/AffymetrixNetAffxCsvFile.R
982b1107d5414591aa6b5dc0109b19d1 *R/AffymetrixNetAffxCsvFile.XTRS.R
5b21fa7dfbf295a1981b7f3a69ffbcef *R/AffymetrixPgfFile.R
8b384a51cc546ccc336bd532c1a631db *R/AffymetrixPlatform.R
91e9318d5cced2f28ba40af9d8d1d9db *R/AffymetrixProbeTabFile.R
3233c674a6fbdf7218451f02deaf3c8e *R/AffymetrixTabularFile.R
c11a6c8d20f87aef99e31adf2e5f7943 *R/AffymetrixTsvFile.R
ef339c687d3ee7a3811d02b534a223fc *R/AlleleSummation.R
e1b52cc0298380d1a8f4a175cbfe7c4e *R/AllelicCrosstalkCalibration.PLOT.R
8a24dd8ea57b8a98aa9cf09fb98566a0 *R/AllelicCrosstalkCalibration.R
1c91dccd5013bf3d659b82c9392d8485 *R/AllelicCrosstalkCalibration.getSetsOfProbes.R
de1bb850b37d0f2d0c578336222a49d0 *R/AromaCellCpgFile.AFFX.R
9c4a4794511dea54104b5cbb2ce11847 *R/AromaCellMatchScoreFile.AFFX.R
5d05fb7aa508bb85d8ecf4889a2505a3 *R/AromaCellMatchScoreFile.R
187655af33764b1c7b306883aa8200c1 *R/AromaCellMatchScoreFile.importFromBpmap.R
bcd44b82ac924324df0666505a82e6ef *R/AromaCellPositionFile.AFFX.R
0e75f97fc34b071bfb67ba468aeccb08 *R/AromaCellSequenceFile.AFFX.R
bc017d8dd61c1539e27553f2999bf515 *R/AromaCellSequenceFile.importFromBpmap.R
49c64a487be09574bfd612b8c8a95d92 *R/AromaChipTypeAnnotationFile.R
9918a6428d0d65e5bc8728f8bcc16638 *R/AromaPipeline.R
be2ab7e894def0b27968c9d14353853f *R/AromaUfcFile.R
ae181450517e71d679f3fcc648599816 *R/AromaUflFile.AFFX.R
9741a66f7c548e3ad28b88d5bc1d4819 *R/AromaUgpFile.AFFX.R
8d7c69f64981eaa02da6aae6688f6753 *R/AromaUnitGcContentFile.AFFX.R
4b6bef7bfdc8e508d67a006ca2ba027f *R/AromaUnitTabularBinaryFile.AFFX.PLOT.R
92ee7e1b10cbeb06ba273dd918d56ba5 *R/AromaUnitTabularBinaryFile.AFFX.R
84290b07b85b92868ba9beb40dcfe407 *R/ArrayExplorer.R
7f54fae5a8b96fdb877253492e94fcd2 *R/AvgCnPlm.R
0ab22c2ac1061d0e14802c233c89ae0c *R/AvgPlm.R
638f2ed470c7fb348bcf165e266e5452 *R/AvgSnpPlm.R
279ac36b9d100c2d7470b62826a8befb *R/BackgroundCorrection.R
0c89174389902e5a64c284aebf3e38a0 *R/BaseCountNormalization.R
2074c55f46519bd7dcb764bfd6e3c8a6 *R/BasePositionNormalization.R
dd8898688cee0d01b8ec41a267290476 *R/BasePositionNormalization.getFit.R
05fa5a8224ab735f688197577823a488 *R/ChipEffectFile.R
d16b4dbe009d5eb614b74d31e5b9493b *R/ChipEffectFile.TOFULL.R
8354315fd5473f89b90013897f343501 *R/ChipEffectFile.extractTheta.R
52a59f857ff71b03f68ce0590cdf0ca1 *R/ChipEffectFile.fromDataFile.R
c865b3c51fb37d787a6b5b43f67a980b *R/ChipEffectFile.getUnitGroupCellMatrixMap.R
c9456d8d16ae0438da60b4093b6666f0 *R/ChipEffectFile.xam.R
8a1d722339bc5ae9258d1023acf501bf *R/ChipEffectGroupMerge.R
5be336f9817c0de390e07a0a19a5502b *R/ChipEffectNnn.extractChromosomalDataFrame.R
9315e41742e13ec8afcf5e13bdf1d18d *R/ChipEffectSet.PLOT.R
5aaf8d33b105afa130c86ae52c7ae882 *R/ChipEffectSet.R
2453b7aba45dbb65f6840cb2f15dbc42 *R/ChipEffectSet.STATS.R
223696f2a3644ec3aa0469e745a28612 *R/ChipEffectSet.TOFULL.R
9bdc283edd1661ca6085d5ef28a36f38 *R/ChipEffectSet.calculateBaseline.R
18bf89c6f08ca1879b9a80f3e037775d *R/ChipEffectSet.extractExpressionSet.R
61ac5af168ea27f2e71c51c38f30e70c *R/ChipEffectSet.extractTheta.R
7b722cdaf94ce33f818cedbb6abebf25 *R/ChipEffectSet.getBaseline.R
d193b7e9321abccf182efcb6df6033c3 *R/ChipEffectSet.xam.R
45c95eb30f815da0add6f5c25bfe1f2d *R/ChipEffectSetTuple.R
575735cb5246bd5da24a48995c39abd6 *R/ChipEffectTransform.R
0c04c9abc4cf1f27ae9000ea12465579 *R/ChromosomalModel.AFFX.R
a282fdfc67dcaf153523fac0e911a400 *R/ChromosomalModel.getPositionChipTypeUnit.R
4fed875c451c1394ee96f57bcaf4bc59 *R/ChromosomalModel.getXTheta.R
d534ee388f644932053f91775c05f0d8 *R/CnChipEffectFile.R
b871fa6332428e3c8bf5a126ebe0e06a *R/CnChipEffectFile.exportAromaSignalBinaryFileList.R
a00e5ec4eb2d9d98507af15c5fe4f62d *R/CnChipEffectSet.R
143811258101887c78dac096506ff4b9 *R/CnChipEffectSet.importFromApt.R
c82b01cca1d1c38ab2f58b788e17c01a *R/CnChipEffectSet.importFromDChip.R
dd1f3aa432496c87fadc6cc374e0ae4f *R/CnChipEffectSet.writeWig.R
885557e308583eab6b5790f8bfe215a7 *R/CnChipEffectSetTuple.R
f32b39503be50c0abe13b58d43ef8e51 *R/CnPlm.R
322fe74012586a7e05ee98a6f87a2e43 *R/CnProbeAffinityFile.R
791b5d701adfd50b1a104d6504e809c2 *R/CnagCfhFile.R
01f4ec70e4646873b83e73858cd52e6c *R/CnagCfhSet.R
a2faaee83c703f8d6f704c09277229c0 *R/CopyNumberChromosomalModel.applyCCF.R
f4abcae38c717d35434d49b3b9b154ed *R/CopyNumberSegmentationModel.migrateTool.R
1231d59e7d8402287c541943eb10b3b7 *R/CrlmmModel.EXT.R
3afbadc292c4b6e693eb2893e946aebd *R/CrlmmModel.R
ceb9482694760429bd70a6eaa3d55ebd *R/CrlmmParametersFile.R
7d1f55fb2e3ba27bffd9639117af5a4f *R/CrlmmParametersSet.R
9982949ee49c2182813477c8a8d2a185 *R/DChipCdfBinFile.R
a2bd9332769c3d60914e966bf2142f3b *R/DChipCdfBinFile.mapToUnitNamesFile.R
df1ce5a737320ee20be25f06d2fe07be *R/DChipDcpFile.R
d65e7c3cc6cefa9708f2ba058a30f752 *R/DChipDcpSet.R
0964512fc5049a3fece84c525b27e252 *R/DChipDcpSet.extras.R
dd46b6045735bc6a68b4cfb9b089002c *R/DChipGenomeInformation.R
e856ca25a2e923608ef8dff0c9207c0d *R/DChipQuantileNormalization.R
d24b177d0b1fe5cb9f1ce430d0b91617 *R/DChipSnpInformation.R
f8fc19fa63ef0393520f1ec6287506f5 *R/ExonChipEffectFile.R
b5de2029cb7b39ffe8cd66e8cc8c0a49 *R/ExonChipEffectSet.R
19a07b241a4098a0d2b329d7d38be12b *R/ExonProbeAffinityFile.R
6d4320b5b695441255f82b182cb15f93 *R/ExonRmaPlm.R
9a827c0178af247dc27980a86df68e43 *R/ExonRmaPlm.calculateWeights.R
d973c4d47a7055afc91643cc7981e5eb *R/FirmaFile.R
ed9c76241967a095e81ca46d375f0f00 *R/FirmaModel.R
65006b66da2fea6a8182f3b687b33455 *R/FirmaSet.R
b71ecbab7f1a9c0ee77943851cbd0223 *R/FragmentEquivalentClassNormalization.R
565acbceb3ad1ae2dc2d7b84572a26ad *R/FragmentLengthNormalization.R
2c548152218823f234f2e8b6dfa16894 *R/GcContentNormalization.R
87de9d5d2bc73be29cb498d44f7fc8e3 *R/GcContentNormalization2.R
7eebcd1ca32deb5ec0cadce5abc97e49 *R/GcContentNormalization2.plotCovariateEffects.R
75fa08e8cc4ca2e0bf996d342cbae560 *R/GcRmaBackgroundCorrection.R
13feec0316ead8316ddcfe55c4aedbb4 *R/GenericReporter.R
90d52a5eaee86651e805249e300bf83c *R/GenomeInformation.AFFX.R
6eded5d46ff973081989952bdaa7bd3a *R/GenomeInformation.R
20e2824e6d3c3f32b88ebb2bbd598a28 *R/HetLogAddCnPlm.R
03aa3ea0a0356d1e649d8f9c49497fdc *R/HetLogAddPlm.R
fbb44e1c2286833942d4b48e7e2a63ea *R/HetLogAddSnpPlm.R
5b70de85c7a301fd6ca55ba9691fd9ca *R/LimmaBackgroundCorrection.R
10e115082503474746987873ea836122 *R/LinearModelProbeSequenceNormalization.R
39ba438d1cd4a9365b773c7ab8954fa9 *R/MatNormalization.R
415dcbb23f28a5ae8357b1b6e1acf9c5 *R/MatSmoothing.R
4386b68b4f5402ec9d364152efb3becd *R/MbeiCnPlm.R
126c444348cee9455979b4c594de9f68 *R/MbeiPlm.R
a4c8dd1598130ec4ee9c0161350fb7a2 *R/MbeiSnpPlm.R
c490f461736866472882b8befe4a4d01 *R/Model.R
b4c99f2b3cf06f71ee3120741a968834 *R/MultiArrayUnitModel.R
37ba624e4e9b7b58f20301a50eefc1c0 *R/NormExpBackgroundCorrection.R
e86b9a5b1c2053d1b0e1aa8bbe2d34d0 *R/OpticalBackgroundCorrection.R
9388086af14d2145806a908149b6fa41 *R/Package.XTRA.R
7311f98cfddea77bb13c06c97d00ec2a *R/ParameterCelFile.R
09c8392e04efef1142d31f84cc8b98a2 *R/ParameterCelFile.extractNnn.R
47755aa3b1170f315c5d812412a6211c *R/ParameterCelSet.R
feeb65f0e2af9bcb1769df0d1ab7f7b0 *R/ProbeAffinityFile.R
5b2351d48635c6b54e4b20b7a7279941 *R/ProbeLevelModel.R
74066f6a76a351f12047cbd432af8ef5 *R/ProbeLevelModel.calculateResiduals.R
dfc5c55be59d42feff67ca2c357cfc07 *R/ProbeLevelModel.calculateWeights.R
16e5916a6b03d9329a75c076040bb031 *R/ProbeLevelModel.fit.R
24c93673f00437946c68c8ee93141fc8 *R/ProbeLevelTransform.R
f0dc9a6adf727443834878ad0cecca0e *R/ProbeLevelTransform3.R
36160aae6d25aa158a26d8b940dbea94 *R/QualityAssessmentFile.R
97d0aab8bc7b7fa5a75c04f34a6f0734 *R/QualityAssessmentModel.R
75a5461c18af13ee73ce54600446f831 *R/QualityAssessmentSet.R
c775b70e94e0484f85773902c8300727 *R/QuantileNormalization.R
0b46865a2c68399caf944c9f45a6bfe7 *R/QuantileNormalization.xtra.R
c70efe2a7edef5bf401e671fb607658f *R/ReseqCrosstalkCalibration.R
c001a6d373238b8096528ecb620380c5 *R/ResidualFile.R
0b238a114a8f34eff98a74279a211090 *R/ResidualSet.R
aed30e75863bcf487d146b1aa3acc660 *R/RmaBackgroundCorrection.R
2ad88cc209882d805dc2509d7efff011 *R/RmaCnPlm.R
66e6bec8947db3c724516a5679673aab *R/RmaPlm.R
025d49973a69311ebfc8d2871df78bd4 *R/RmaSnpPlm.R
73f0ac43a6a70abd6fd4b3bdfb2f4a4e *R/ScaleNormalization.R
86bced0050a009eedff2b3f0ac8e8ece *R/ScaleNormalization3.R
e102ca5dda9b45af1dd6673c4508a62b *R/SingleArrayUnitModel.R
1eb3c499cb87f07882de42a09877921c *R/SingleArrayUnitModel.fit.R
3477435df7d5b5601f3f2eef30f382b2 *R/SmoothMultiarrayModel.R
3f8fb8fe24287227ee40d0c511c15fd5 *R/SmoothMultiarrayModel.fit.R
d80c5c2e9704869e826dd0bc1c5ccb08 *R/SmoothRmaModel.R
b08de6e4447e919a87dc175feafdad9d *R/SmoothSaModel.R
d41f3cb10f5291c177b053ac794c2e4d *R/SnpChipEffectFile.R
d1771694d7674b5cdd1e53d661ff5fd1 *R/SnpChipEffectFile.exportTotalAndFracB.R
314602421853ba79caad94009f66cdee *R/SnpChipEffectFile.extractTotalAndFracB.R
8440767670472998918db3f133159be3 *R/SnpChipEffectGroupMerge.R
60c62f761725b50de47062fccabfbd16 *R/SnpChipEffectNnn.extractCNT.R
3c33c0b92a71034bf1b680b3dbdf1c92 *R/SnpChipEffectNnn.writeCNT.R
69464db2bd06a1d745e87eaf1b839e80 *R/SnpChipEffectSet.R
f25155f57e0f982053f1c289d5290ce9 *R/SnpChipEffectSet.exportTotalAndFracB.R
045d0c2f2ed1e32b60fff6ee93f5903c *R/SnpChipEffectSet.extractAlleleSet.R
2e42be2d95c4924e00a93464dc6c6dc6 *R/SnpChipEffectSet.extractSnpCnvQSet.R
28fbc6e784aeff384f3192e67f7b1007 *R/SnpChipEffectSet.extractSnpQSet.R
d45c93541d8d79a05e0525ecbd369394 *R/SnpChipEffectSet.extractTotalAndFreqB.R
e41da8d1cac0535636736be4821751b6 *R/SnpCnvQSet.extractTheta.R
30db81158518dd577bcd7dfe3fa9ac28 *R/SnpInformation.R
497d4a7c94d284c030f8591018978253 *R/SnpPlm.R
cb7905079edd2ca85e05b28e9a56ebb3 *R/SnpProbeAffinityFile.R
bf5f30204865b2ddd14564a9efb4ed49 *R/SnpQSet.extractTheta.R
5163da5df3213a10a30395c74b9c76ab *R/SpatialReporter.R
0872fabcb328e5b1f7860d9dba9843f7 *R/SpatialRowColumnNormalization.R
851742b37d6571c776417c25a6ed6e74 *R/Transform.R
5104707a080e86d80f476d0b19cc417d *R/TransformReport.R
3a3a7f246de9889998c23b89394a3467 *R/UflSnpInformation.R
7dac249d5533374c9d3ae188a1e186e7 *R/UgpGenomeInformation.R
ca7479f911c6d59a61d6f6425b711a03 *R/UnitModel.R
4446fc2fcb7bcc6aa8c08d8145fae80d *R/UnitModel.fitCnProbes.R
92748cf93ae20ffe6b2696822b708ee9 *R/UnitTypeScaleNormalization.R
fe7ad2ef018b84dc8d866fe8c39a9c4a *R/WeightsFile.R
ae4f395ffb982c0d1d37774ba88df4f1 *R/WeightsSet.R
2b421c0f599c3c197b66d85f7398167a *R/bpmapCluster2Cdf.R
fd69e15c0a5d3aa121773dd92f29de44 *R/createExonByTranscriptCdf.R
16ec81ad83003837c79b43477fb0f3bf *R/doCRMAv1.R
155c0a1cdcfa586a655d92d803e0a959 *R/doCRMAv2.R
526f60d4ed2843d25a18bd276bcefafb *R/doFIRMA.R
48892a757a0dfd1c00a427c66d3e075b *R/doGCRMA.R
3b48b961785d95998b0733ef06af94e6 *R/doRMA.R
c90cb0bba5df20155c440687ff87ba8f *R/dropCellsFromCdfList.R
f4591d5afcfcf4333a857dec0bb7f81b *R/env2Cdf.R
2a7c13af47cff3c192b06c046ecc3eb6 *R/findCdf2.R
4fcbfb109c489094b2693a6a0740acd7 *R/fitPlasqUnit.R
cca1f41dd7f3b7344d10adb265e3a2af *R/getPlasqTypes.R
3e57045942cd5a9d28a741a2fa152795 *R/isUnitGroupCellMap.R
550069642d145392844edb62705651d3 *R/pdInfo2Cdf.R
986fd350ec9feba8de8ec1aafcf26e03 *R/plotBoxplotStats.list.R
c46c6af690a9d4256d5517de670a8cce *R/profileCGH.getRegions.R
44599d13b54232d8fbbd7f560e06e211 *R/profileCGH.writeRegions.R
564f62f6e9d7fa489e90081c79818c9f *R/readCdfGroupStrands.R
301a8f3e87a616a94f9bdf22f8fde8a8 *R/readCfhHeader.R
9e400478b203efdeb6d9181049cb1f59 *R/readCfhUnits.R
8140a254c4a3d37cb328bf531dd494a3 *R/readCfnHeader.R
9c1331a3df47b1a2e0946e9f59b42ef3 *R/readCfnUnits.R
54aaa6461d501c7fc98b0d0deedab07b *R/setCustomFindCdf.R
dc216ec0e45b0da9af67df4774536521 *R/zzz.R
29608c1f91a709ebc8054bb733abfaa6 *incl/999.missingdocs.txt
c225311a80480048ca6411f2674654cf *incl/AffymetrixCelSet.Rex
5135155a71eefccbccfd5d0631e19be9 *incl/BengtssonH_2003.bib.Rdoc
b57ea11e4874b3a90d095dcd79da7340 *incl/BengtssonH_etal_2008.bib.Rdoc
a6772a25c193f187e4faa6ee34ce6f12 *incl/BengtssonH_etal_2008b.bib.Rdoc
dc26244dbc857aa3e19b3fa8353b25e5 *incl/CnPlm.Rex
2183b5025cb220990b239825a15f9e2d *incl/QuantileNormalization.Rex
6de9e94e97a0f52ed69421291d600d29 *incl/SnpPlm.Rex
ac2a2c2445df124fa6ad32df1d5af61e *incl/getGenomeInformation.Rex
57714aa852b223b937ff30bf6b22e70c *incl/readCdfDataFrame.Rex
cb58569a24d434884f8bc2203311aa96 *inst/CITATION
2e3c8802e46ee117deddebf1a7e6fe81 *inst/NEWS
cb26988c8868136d565222e359901a1b *inst/annotationData/dataSets/HapMap,testSet/all,fullnames.txt
2d2b2b27e143bfd12cadafeb38e4df5e *inst/annotationData/genomes/Human/Human,chromosomes.txt
9e07d02f8490e282d0e94e249d294986 *inst/annotationData/samples/HapMap270.saf
5dee731fa71edb3a4478dec4dc87c9e4 *inst/buildScripts/chipTypes/Canine_2/Canine_2,ACS.R
38886cb7f6913bd15b90d5e02f660afc *inst/buildScripts/chipTypes/CytoScanHD_Array/CytoScanHD_Array,ACS.R
beaf84ab9679cdfd715eea16551371e9 *inst/buildScripts/chipTypes/CytoScanHD_Array/na32/CytoScanHD_Array,UFL.R
57ba5ddca80f54153847bd323c3c9332 *inst/buildScripts/chipTypes/CytoScanHD_Array/na32/CytoScanHD_Array,UGP.R
011d35e05d7ad1fd031ec6ef6a9eaf23 *inst/buildScripts/chipTypes/Cytogenetics_Array/Cytogenetics_Array,ACS.R
0faddcde99f4c0c08a0d91c7072e6c5f *inst/buildScripts/chipTypes/Cytogenetics_Array/na28/Cytogenetics_Array,UGP,na28.R
be52c0d61fb461f7c7fbea5257dabbc3 *inst/buildScripts/chipTypes/DogSty06m520431/DogSty06m520431,ACS.R
fda8ee2f56e3e0d1f841a7ea372ae56d *inst/buildScripts/chipTypes/GenomeWideSNP_5/na25/GenomeWideSNP_5,UFL,na25,GWS6.R
417252c37e5d900e8a82bb80c1dd2a44 *inst/buildScripts/chipTypes/GenomeWideSNP_5/na26/GenomeWideSNP_5,UFL,na26,GWS6.R
79e22673c097673c89b0610e4e173ee3 *inst/buildScripts/chipTypes/GenomeWideSNP_5/na26/GenomeWideSNP_5,UFL,na26.R
2e2ccdfcabe57cebef727f078eec7c24 *inst/buildScripts/chipTypes/GenomeWideSNP_5/na26/GenomeWideSNP_5,UGP,na26.R
9b1d57ce6f7fe1bc8944bfcea7ad3f77 *inst/buildScripts/chipTypes/GenomeWideSNP_5/na26/GenomeWideSNP_5,default,UGP+UFL,na26.R
769944849e1610f3719c8eff20034b4f *inst/buildScripts/chipTypes/GenomeWideSNP_6/GenomeWideSNP_6,UFL.R
f6a122e55898c690164ce87a3b7da07f *inst/buildScripts/chipTypes/GenomeWideSNP_6/GenomeWideSNP_6,UGP.R
d7725d997729faa23cf66037bc3fdd12 *inst/buildScripts/chipTypes/GenomeWideSNP_6/GenomeWideSNP_6,default,UGP+UFL.R
c1f04b0303ed35f33e2dda21039693fd *inst/buildScripts/chipTypes/GenomeWideSNP_6/na25/GenomeWideSNP_6,UFL,na25.R
3aaf8cb668d01887a2bcbe344cbb759c *inst/buildScripts/chipTypes/GenomeWideSNP_6/na26/GenomeWideSNP_6,UFL,na26.R
bb6e97921f4c50361b6f25c06c637f70 *inst/buildScripts/chipTypes/GenomeWideSNP_6/na26/GenomeWideSNP_6,UGP,na26.R
7d6ba89f1199ced6aa0d4992c1e1c453 *inst/buildScripts/chipTypes/GenomeWideSNP_6/na26/GenomeWideSNP_6,default,UGP+UFL,na26.R
09f1aa1d0d7f14862574c5d4502ee1be *inst/buildScripts/chipTypes/GenomeWideSNP_6/na27.1/GenomeWideSNP_6,UFL,na27.1.R
548b807b9b5eba7d7fcda1ba9abd3a7d *inst/buildScripts/chipTypes/GenomeWideSNP_6/na27.1/GenomeWideSNP_6,UGP,na27.1.R
279629ba6f35c5f5be84a5b3199115fe *inst/buildScripts/chipTypes/GenomeWideSNP_6/na27.1/GenomeWideSNP_6,default,UGP+UFL,na27.1.R
0671b3a2c3bd319d7d0206614534ed0f *inst/buildScripts/chipTypes/GenomeWideSNP_6/na27/GenomeWideSNP_6,UGC,na27.R
eb8720d1511afd19cb9d535cb244743e *inst/buildScripts/chipTypes/GenomeWideSNP_6/na30/GenomeWideSNP_6,UFL,na30.R
818fb9ec39b131709dc5a585c3fd6d98 *inst/buildScripts/chipTypes/GenomeWideSNP_6/na30/GenomeWideSNP_6,UGP,na30.R
769944849e1610f3719c8eff20034b4f *inst/buildScripts/chipTypes/GenomeWideSNP_6/na31/GenomeWideSNP_6,UFL.R
f6a122e55898c690164ce87a3b7da07f *inst/buildScripts/chipTypes/GenomeWideSNP_6/na31/GenomeWideSNP_6,UGP.R
d7725d997729faa23cf66037bc3fdd12 *inst/buildScripts/chipTypes/GenomeWideSNP_6/na31/GenomeWideSNP_6,default,UGP+UFL.R
a10b6262e8228a05566ff7b44b8ff645 *inst/buildScripts/chipTypes/HG-Focus/HG-Focus,ACS.R
cc74d6aba8f45af00a6c0c9fa9f7c902 *inst/buildScripts/chipTypes/HuEx-1_0-st-v2/HuEx-1_0-st-v2,ACS.R
fa74813b16cc5106a56c4463a1064cc6 *inst/buildScripts/chipTypes/HuEx-1_0-st-v2/HuEx-1_0-st-v2,CDF,exonByTranscript.R
2bb16ec3522da709270e2bfc075cdd4c *inst/buildScripts/chipTypes/HuGene-1_0-st-v1/HuGene-1_0-st-v1,ACS.R
c52ae13067c2a10b2a492c4f2e3a19a1 *inst/buildScripts/chipTypes/HuGene-1_0-st-v1/HuGene-1_0-st-v1,NetAffx.R
fd29e01d93b9f954e7373e295aa6c5f5 *inst/buildScripts/chipTypes/MOUSEDIVm520650/MOUSEDIVm520650,ACS.R
cf4d97c51b47da2ea80c1f3837e4a19c *inst/buildScripts/chipTypes/MOUSEDIVm520650/na30/MOUSEDIVm520650,UFL,na30.R
a3feaacd87f2eea36d1e405959a9a25a *inst/buildScripts/chipTypes/MOUSEDIVm520650/na30/MOUSEDIVm520650,UGP,na30.R
8c511d1a5618012cb00713097222e910 *inst/buildScripts/chipTypes/Mapping10K_Xba131/Mapping10K_Xba131,ACS.R
58628a923a944ab85e6c0ca8b8350349 *inst/buildScripts/chipTypes/Mapping10K_Xba131/na26/Mapping10K_Xba131,UFL,na26.R
27186bdf537168f4232c5ebcc78810ee *inst/buildScripts/chipTypes/Mapping10K_Xba131/na26/Mapping10K_Xba131,UGP,na26.R
f55cbda094d131bf3e117b954cadb2bb *inst/buildScripts/chipTypes/Mapping10K_Xba142/Mapping10K_Xba142,ACS.R
ecc77a1daaf5e392d2b91761ba322f61 *inst/buildScripts/chipTypes/Mapping10K_Xba142/na26/Mapping10K_Xba142,UFL,na26.R
d0bf24cd2332cc35c10047e02c67668e *inst/buildScripts/chipTypes/Mapping10K_Xba142/na26/Mapping10K_Xba142,UGP,na26.R
6e09ee489d3e87f5cc37dc4591f02bdf *inst/buildScripts/chipTypes/Mapping250K_Nsp/na26/Mapping250K_Nsp,UFL,na26.R
0ae8e653b0a94cb005cb25c285d93ce2 *inst/buildScripts/chipTypes/Mapping250K_Nsp/na26/Mapping250K_Nsp,UGP,na26.R
f23c5109051ba1071d4b49c727fc7b7d *inst/buildScripts/chipTypes/Mapping250K_Nsp/na28/Mapping250K_Nsp,UGC,na28.R
fac49f9cf7793b623573166eb49c4b7e *inst/buildScripts/chipTypes/Mapping250K_Nsp/na31/Mapping250K_Nsp,UFL,na31.R
5fb2398cb0e599a9c6ffc04c63426874 *inst/buildScripts/chipTypes/Mapping250K_Nsp/na31/Mapping250K_Nsp,UGP,na31.R
2f34a54e0e869e294ed962cb8e365ec6 *inst/buildScripts/chipTypes/Mapping250K_Sty/na26/Mapping250K_Sty,UFL,na26.R
4a29fde18b80115da7924372a2477176 *inst/buildScripts/chipTypes/Mapping250K_Sty/na26/Mapping250K_Sty,UGP,na26.R
57b6d7b12411b173c4a0abed9374a2c7 *inst/buildScripts/chipTypes/Mapping250K_Sty/na28/Mapping250K_Sty,UGC,na28.R
e9acaab6eea9c7e37428b059957097fc *inst/buildScripts/chipTypes/Mapping250K_Sty/na31/Mapping250K_Sty,UFL,na31.R
8f01c900c71247aec3db30c9c000552b *inst/buildScripts/chipTypes/Mapping250K_Sty/na31/Mapping250K_Sty,UGP,na31.R
e35d67db6c25ff2cb6fead89ef0ecf1b *inst/buildScripts/chipTypes/Mapping50K_Hind240/Mapping50K_Hind240,UFL.R
48ed8e4525fc226308f6bb33f5ce9478 *inst/buildScripts/chipTypes/Mapping50K_Hind240/Mapping50K_Xba240,UGP.R
5f9c6f3ff1cd0ec89af6ef57dd2cfbe5 *inst/buildScripts/chipTypes/Mapping50K_Hind240/na26/Mapping50K_Hind240,UFL,na26.R
d55543e48232a10313d1a1fb33521a0f *inst/buildScripts/chipTypes/Mapping50K_Hind240/na26/Mapping50K_Hind240,UGP,na26.R
21e57b2f5da36d4092b90121d53c41e1 *inst/buildScripts/chipTypes/Mapping50K_Xba240/Mapping50K_Xba240,ACS.R
6ad7bbba2ef2fd39d84c5c271600bdc1 *inst/buildScripts/chipTypes/Mapping50K_Xba240/Mapping50K_Xba240,UFL.R
223d77413da77455d372ebf94be93899 *inst/buildScripts/chipTypes/Mapping50K_Xba240/Mapping50K_Xba240,UGP.R
043dd00839a3caf2f363f6cb2c8ba24d *inst/buildScripts/chipTypes/Mapping50K_Xba240/na26/Mapping50K_Xba240,UFL,na26.R
17e284e310477ae145291d525f97dade *inst/buildScripts/chipTypes/Mapping50K_Xba240/na26/Mapping50K_Xba240,UGP,na26.R
ab76a79bfc6f20b58aa39a24620cdcff *inst/buildScripts/chipTypes/MoGene-1_0-st-v1/MoGene-1_0-st-v1,ACP.R
4b290cf8c9a2cae8f555ef1e5e0e365a *inst/buildScripts/chipTypes/MoGene-1_0-st-v1/MoGene-1_0-st-v1,ACS.R
23af17258d6773af3356f565c5bb2932 *inst/buildScripts/chipTypes/MoGene-1_0-st-v1/MoGene-1_0-st-v1,UGP.R
37459d8a7e6ef863b5621d815969fcd3 *inst/buildScripts/chipTypes/Sc03b_MF_v04/Sc03b_MF_v04,CDF.R
f21ef44815760793e8de9508e940c23d *inst/downloadScripts/chipTypes/Mapping50K_Hind240,Xba240/HapMap,testSet,100K.R
e8ef5bda321103fb3964b20b397b3d1e *inst/testScripts/R/downloadUtils.R
6b8056c809f27295c582b1b4ee011bad *inst/testScripts/R/installUtils.R
dd47716fb2df066d596ab058e992db74 *inst/testScripts/R/launchUtils.R
24ae8e2ae1d3dd318ffacceaf10920c6 *inst/testScripts/addons/chipTypes/Mapping250K_Nsp,Sty/01a.downloadAnnotationData.R
19dbdf34572c4d3d10ad1a2ba800e599 *inst/testScripts/addons/chipTypes/Mapping250K_Nsp,Sty/01b.downloadRawData.R
6a3369c51c08cf5c0ac249858f0f68dd *inst/testScripts/addons/chipTypes/Mapping250K_Nsp,Sty/01c.installPackages.R
1f10d91e790d722fbf4db40e4857d024 *inst/testScripts/addons/chipTypes/Mapping250K_Nsp,Sty/test20120825,GSE12702,TCNs,crossplatform.R
ce5591be8b07e06d5074bbfca51bad06 *inst/testScripts/addons/chipTypes/Mapping250K_Nsp/01a.downloadAnnotationData.R
19dbdf34572c4d3d10ad1a2ba800e599 *inst/testScripts/addons/chipTypes/Mapping250K_Nsp/01b.downloadRawData.R
a0df391f21b6d52c66245a84f02da2db *inst/testScripts/addons/chipTypes/Mapping250K_Nsp/01c.installPackages.R
15dc50a8dd3050856ed08390c742b142 *inst/testScripts/addons/chipTypes/Mapping250K_Nsp/21.doASCRMAv2,CalMaTe.R
efb398a1d05da4a8efe7ac19596c8325 *inst/testScripts/addons/chipTypes/Mapping250K_Nsp/31.doASCRMAv2,PSCBS.R
a4c2d2d1fc55f0a4bc484c6372189367 *inst/testScripts/addons/chipTypes/Mapping50K_Hind240/01a.downloadAnnotationData.R
022a6840e27024d934659365abb1ae53 *inst/testScripts/addons/chipTypes/Mapping50K_Hind240/01b.downloadRawData.R
ce4abe85c79b08a1e07f6127084c9f65 *inst/testScripts/addons/chipTypes/Mapping50K_Hind240/01c.installPackages.R
ce495279297b2c6db7b0e6d1106d1129 *inst/testScripts/addons/chipTypes/Mapping50K_Hind240/21.doACNE,seg.R
f54324dc73f677cfa430c89362fd36df *inst/testScripts/archive/system/chipTypes/Mapping250K_Nsp,Sty/test20070823,500K,TumorNormal,CN.R
82e3baf07540ff66de2b65ac24f8904e *inst/testScripts/archive/system/chipTypes/Mapping250K_Nsp,Sty/test20090116,250K,TumorNormal,ASCN.R
a0b900912c0e07614af99efe597842e8 *inst/testScripts/archive/system/chipTypes/Mapping250K_Nsp,Sty/test20090117,250K,TumorNormal,ASCN,pairy.R
f183b82e71edd3866676a230b288b837 *inst/testScripts/complete/dataSets/GSE12702/01a.downloadAnnotationData.R
8b7de33af9d95ddbacc7637a96add4f0 *inst/testScripts/complete/dataSets/GSE12702/01b.downloadRawData.R
2f31d8fdcaccb540073cf8c53d94f75c *inst/testScripts/complete/dataSets/GSE12702/01c.installPackages.R
ca1eeab0b19104ccfbde7407d346e6b0 *inst/testScripts/complete/dataSets/GSE12702/11.doASCRMAv2,Mapping250K_Nsp.R
9b2099210381a94f2bae3a15e127ca61 *inst/testScripts/complete/dataSets/GSE12702/11.doASCRMAv2,Mapping250K_Sty.R
4d08f13bbd3b1a78cc0956b30feb53d3 *inst/testScripts/complete/dataSets/GSE12702/22.doASCRMAv2,CalMaTe,Mapping250K_Nsp.R
2383f642669e41f319c5b6f7fb385b1a *inst/testScripts/complete/dataSets/GSE12702/22.doASCRMAv2,CalMaTe,Mapping250K_Sty.R
35e5e31ae76bf600d5cf4b039390db4f *inst/testScripts/complete/dataSets/GSE12702/31.doASCRMAv2,PairedPSCBS,Mapping250K_Nsp.R
922297769e7d10953115bfe2104f418a *inst/testScripts/complete/dataSets/GSE12702/31.doASCRMAv2,PairedPSCBS,Mapping250K_Sty.R
4aff163e787d027b6df369ea80aafd64 *inst/testScripts/complete/dataSets/GSE12702/32.doASCRMAv2,CalMaTe,PairedPSCBS,Mapping250K_Nsp.R
64720c640f3bf073e1bf303b0388b8fe *inst/testScripts/complete/dataSets/GSE12702/32.doASCRMAv2,CalMaTe,PairedPSCBS,Mapping250K_Sty.R
d4f8b0a12f9e8168ddc15fd239e0850c *inst/testScripts/complete/dataSets/GSE12702/GSE12702,samples.txt
97e3cc55d14cd8285668cccbde62d035 *inst/testScripts/complete/dataSets/GSE13372/01a.downloadAnnotationData.R
343dd95bbcaed173a69d20ff5cfb07d0 *inst/testScripts/complete/dataSets/GSE13372/01b.downloadRawData.R
a0df391f21b6d52c66245a84f02da2db *inst/testScripts/complete/dataSets/GSE13372/01c.installPackages.R
00dbfb714b8563b53b0f46306ac2d0ed *inst/testScripts/complete/dataSets/GSE13372/21.doASCRMAv2.R
45f07af0fd77542759775055972b1e29 *inst/testScripts/complete/dataSets/GSE13372/22.doASCRMAv2,CalMaTe.R
0276108cca7b53c27e4d8cdd486e42f3 *inst/testScripts/complete/dataSets/GSE13372/31.doASCRMAv2,PairedPSCBS.R
cb159d9889e66b36abd45cda6f74da76 *inst/testScripts/complete/dataSets/GSE13372/32.doASCRMAv2,CalMaTe,PairedPSCBS.R
0457daeb272b7cfc1da677fad3ed7706 *inst/testScripts/complete/dataSets/GSE13372/GSE13372,samples.txt
97e3cc55d14cd8285668cccbde62d035 *inst/testScripts/complete/dataSets/GSE19539/01a.downloadAnnotationData.R
cd2245ed697c7c81b439dd6a7aee124b *inst/testScripts/complete/dataSets/GSE19539/01b.downloadRawData.R
a0df391f21b6d52c66245a84f02da2db *inst/testScripts/complete/dataSets/GSE19539/01c.installPackages.R
26752a1e25ccc9221326b8a5e136e98d *inst/testScripts/complete/dataSets/GSE19539/21.doASCRMAv2.R
3b4441011bb1835ecb22b50c92518314 *inst/testScripts/complete/dataSets/GSE19539/22.doASCRMAv2,CalMaTe.R
97e3cc55d14cd8285668cccbde62d035 *inst/testScripts/complete/dataSets/GSE20584/01a.downloadAnnotationData.R
b32e217a40f006d8af22b2cd5822e789 *inst/testScripts/complete/dataSets/GSE20584/01b.downloadRawData.R
a0df391f21b6d52c66245a84f02da2db *inst/testScripts/complete/dataSets/GSE20584/01c.installPackages.R
c57556b329dbbe24db291042900d0c83 *inst/testScripts/complete/dataSets/GSE20584/21.doASCRMAv2.R
bb749f7c6c27afcfd357c0cddebc5008 *inst/testScripts/complete/dataSets/GSE20584/31.doASCRMAv2,PairedPSCBS.R
624a16fa24e7932da8f98b8778495a6b *inst/testScripts/complete/dataSets/GSE20584/GSE20584,samples.txt
d3aaad2e98b10208e9b6f0954d123257 *inst/testScripts/complete/dataSets/GSE27691/01a.downloadAnnotationData.R
e6505a1933ca8b91132eb000bb7dccf4 *inst/testScripts/complete/dataSets/GSE27691/01b.downloadRawData.R
a0df391f21b6d52c66245a84f02da2db *inst/testScripts/complete/dataSets/GSE27691/01c.installPackages.R
7340a61697b06a84d2b3b4d00f0b5b00 *inst/testScripts/complete/dataSets/GSE27691/21.doASCRMAv2.R
a351f9220b30fee6087f262b1f7dd657 *inst/testScripts/complete/dataSets/GSE34754/01a.downloadAnnotationData.R
7bde265478de3c20fb4d58e2555c0a0e *inst/testScripts/complete/dataSets/GSE34754/01b.downloadRawData.R
a0df391f21b6d52c66245a84f02da2db *inst/testScripts/complete/dataSets/GSE34754/01c.installPackages.R
ad9d407de3ef9bd03b87795f584ab3a1 *inst/testScripts/complete/dataSets/GSE34754/21.doASCRMAv2.R
73a4e94ead789c6acd235f7011c46241 *inst/testScripts/complete/dataSets/GSE34754/22.doASCRMAv2,CalMaTe.R
87f5ee8f0a5a2cdcdff61db140ceaf7c *inst/testScripts/complete/dataSets/GSE34754/31.doASCRMAv2,PairedPSCBS.R
ab03ec95a6d2ab2e79ac61cc7d7dd09d *inst/testScripts/complete/dataSets/GSE34754/32.doASCRMAv2,CalMaTe,PairedPSCBS.R
be676e23a9332ee8e82b307d0ab888a3 *inst/testScripts/complete/dataSets/GSE34754/GSE34754,samples.txt
7098a2a62bd4e31537dcd152f71687a8 *inst/testScripts/launch.R
17742cee477a8f17fee84a4c72c37748 *inst/testScripts/parallel/chipTypes/Mapping10K_Xba142/01a.downloadAnnotationData.R
1e15d52902286051a9a49910eb263f3b *inst/testScripts/parallel/chipTypes/Mapping10K_Xba142/01b.downloadRawData.R
bea0419e60626da413dfd5bb26f205b5 *inst/testScripts/parallel/chipTypes/Mapping10K_Xba142/11a,doASCRMAv2.R
e14170b84263b78b6aa9af78e774bf8a *inst/testScripts/parallel/chipTypes/Mapping10K_Xba142/21a,doCBS.R
abed3b7a5cb3f62bc3847b717d66e269 *inst/testScripts/replication/chipTypes/GenomeWideSNP_6/01a.downloadAnnotationData.R
7eb9ad9f9d6c5bb1a4107e016a6f02fd *inst/testScripts/replication/chipTypes/GenomeWideSNP_6/01b.downloadRawData.R
140fafda54e8a527a22381f725da3848 *inst/testScripts/replication/chipTypes/GenomeWideSNP_6/01c.installPackages.R
121486495767c5bf38d1f8a9a4ffc2f7 *inst/testScripts/replication/chipTypes/GenomeWideSNP_6/11.justSNPRMA_vs_oligo.R
4a0593fdfb05ea5d7ce8f813d7661b3a *inst/testScripts/replication/chipTypes/HG-U133_Plus_2/01a.downloadAnnotationData.R
47fe3aeb8172641f13efb0326e28a206 *inst/testScripts/replication/chipTypes/HG-U133_Plus_2/01b.downloadRawData.R
e8fd97004e761ca885c4328d5eb87ac5 *inst/testScripts/replication/chipTypes/HG-U133_Plus_2/01c.installPackages.R
6635bd8fb984254270ba74386d2ed398 *inst/testScripts/replication/chipTypes/HG-U133_Plus_2/11.doRMA_vs_affyPLM.R
05c902582913e196d664a48b409b91cc *inst/testScripts/replication/chipTypes/HG-U133_Plus_2/12.doGCRMA_vs_gcrma.R
0a0c2b049a7e9155df95552d6cecb109 *inst/testScripts/replication/chipTypes/HG-U133_Plus_2/oligo,fitPLM.Rhide
6f0dbaa298e9e7e871d53dea98c82dba *inst/testScripts/replication/chipTypes/Hs_PromPR_v02/01a.downloadAnnotationData.R
3c1484d3bc5496ec9eb8cb1cdee8528e *inst/testScripts/replication/chipTypes/Hs_PromPR_v02/01b.downloadRawData.R
112bd3206ac461df9796dcc0e2aa7655 *inst/testScripts/replication/chipTypes/Hs_PromPR_v02/01c.installPackages.R
8bba264211fd48788d58e2353e36cdae *inst/testScripts/replication/chipTypes/Hs_PromPR_v02/11.MatNormalization_vs_MAT.R
24823cdbd3b3a3a55f525d7649ea2815 *inst/testScripts/replication/chipTypes/Hs_PromPR_v02/21.MatSmoothing_vs_MAT.R
c8ac79afe3f3e4f7bebd1fdb34a01874 *inst/testScripts/replication/chipTypes/Mapping250K_Nsp/01a.downloadAnnotationData.R
493741ea71b1457cb0bbb0838d8cf495 *inst/testScripts/replication/chipTypes/Mapping250K_Nsp/01b.downloadRawData.R
892398b616b0a6f0b7bda1b7df5dcbb9 *inst/testScripts/replication/chipTypes/Mapping250K_Nsp/01c.installPackages.R
e454689fb5d5edb9a75331c2ed1f2843 *inst/testScripts/replication/chipTypes/Mapping250K_Nsp/11.justSNPRMA_vs_oligo.R
f37304a8c163a6a9b556115b4e19d520 *inst/testScripts/replication/chipTypes/Mapping250K_Nsp/12.CRLMM_vs_oligo.R
8924f16e25fc5515f2802cad06866b13 *inst/testScripts/replication/chipTypes/Mapping50K_Hind240/01a.downloadAnnotationData.R
50551278d1e785756ad8212c46b7ae5e *inst/testScripts/replication/chipTypes/Mapping50K_Hind240/01b.downloadRawData.R
8df5e6a9377eeed768ab1bebd0afa293 *inst/testScripts/replication/chipTypes/Mapping50K_Hind240/01c.installPackages.R
f5e2744fcd124e542c4fbb5e8d625206 *inst/testScripts/replication/chipTypes/Mapping50K_Hind240/11.justSNPRMA_vs_oligo.R
d519f165d058ce8216d4176e60f50099 *inst/testScripts/replication/chipTypes/Mapping50K_Hind240/12.CRLMM_vs_oligo.R
17742cee477a8f17fee84a4c72c37748 *inst/testScripts/robustness/chipTypes/Mapping10K_Xba142/01a.downloadAnnotationData.R
1e15d52902286051a9a49910eb263f3b *inst/testScripts/robustness/chipTypes/Mapping10K_Xba142/01b.downloadRawData.R
6babca47a54c8be4aa1b787d4bec86d7 *inst/testScripts/robustness/chipTypes/Mapping10K_Xba142/11.doASCRMAv1,CBS,invalid.R
a4c2d2d1fc55f0a4bc484c6372189367 *inst/testScripts/robustness/chipTypes/Mapping50K_Hind240/01a.downloadAnnotationData.R
50551278d1e785756ad8212c46b7ae5e *inst/testScripts/robustness/chipTypes/Mapping50K_Hind240/01b.downloadRawData.R
96ae4758534ed22dca34cb923b2a7a70 *inst/testScripts/robustness/chipTypes/Mapping50K_Hind240/21.doASCRMAv2,CRLMM.R
620b8d7c410aa665fb1fa0d2a1f20be8 *inst/testScripts/robustness/chipTypes/MoGene-1_0-st-v1/01a.downloadAnnotationData.R
3a4ad055db2170aa3aac0484cb330aeb *inst/testScripts/robustness/chipTypes/MoGene-1_0-st-v1/01b.downloadRawData.R
c3237c1be8733895251f3c7d60648e9a *inst/testScripts/robustness/chipTypes/MoGene-1_0-st-v1/11.GcRmaBackgroundCorrection.R
1aac2b486bf18328c88e9e763a349975 *inst/testScripts/setup.R
44ba29e1e4439c2c9854d7cdb3e8b6f1 *inst/testScripts/setup/01a.downloadAllAnnotationData.R
d114894755c1a4a3c387cf639cc94d45 *inst/testScripts/setup/01b.downloadAllRawDataSet.R
d2039e7d23122d344e99ad383a17a895 *inst/testScripts/setup/01c.installAllPackages.R
271dfddaddc96369d8adbb5e754afa2a *inst/testScripts/setup/99a.cleanupRootDirectories.R
587b454a0475abb90c181ac01cad519b *inst/testScripts/setup/spawnTests.sh
9b161f380b92681ee144fde3be0236fd *inst/testScripts/system/chipTypes/CytoScanHD_Array/01a.downloadAnnotationData.R
924b003faa976803c56834a3c55842c5 *inst/testScripts/system/chipTypes/CytoScanHD_Array/01b.downloadRawData.R
c3bdbc3a14811a9693110e4fe1892305 *inst/testScripts/system/chipTypes/CytoScanHD_Array/21,doASCRMAv2,CBS.R
756c26e18f11974185e99902f2de1325 *inst/testScripts/system/chipTypes/CytoScanHD_Array/21,doASCRMAv2.R
d330acb96b65f05a9ddf886f8caf7132 *inst/testScripts/system/chipTypes/CytoScanHD_Array/21.doASCRMAv2,PSCN.R
81a4ba4f70724312078c8e36c19412bc *inst/testScripts/system/chipTypes/Cytogenetics_Array/01a.downloadAnnotationData.R
85040c81e9e35f86769a660d0b2ced5d *inst/testScripts/system/chipTypes/Cytogenetics_Array/01b.downloadRawData.R
1a3ed151afc453fc00a7d036098e280c *inst/testScripts/system/chipTypes/Cytogenetics_Array/test20090828,cyto.R
ff8d5cc8ffb5ddad9bbaa38ca5301057 *inst/testScripts/system/chipTypes/GenomeWideSNP_5/01a.downloadAnnotationData.R
d787d1b1cccda6cec9de8b34fa10f117 *inst/testScripts/system/chipTypes/GenomeWideSNP_5/01b.downloadRawData.R
00d791317b6e4c651b3146e88dc01539 *inst/testScripts/system/chipTypes/GenomeWideSNP_5/21.doASCRMAv2,ArrayExplorer.R
f02e60ebc2fadc3449a9b4231941b953 *inst/testScripts/system/chipTypes/GenomeWideSNP_5/21.doASCRMAv2.R
3209226df15cd8b6bb27aaa7e383905e *inst/testScripts/system/chipTypes/GenomeWideSNP_6/01a.downloadAnnotationData.R
7eb9ad9f9d6c5bb1a4107e016a6f02fd *inst/testScripts/system/chipTypes/GenomeWideSNP_6/01b.downloadRawData.R
140fafda54e8a527a22381f725da3848 *inst/testScripts/system/chipTypes/GenomeWideSNP_6/01c.installPackages.R
14105ef021a6b20533dc5d70efe66cb5 *inst/testScripts/system/chipTypes/GenomeWideSNP_6/11.justSNPRMA.R
e38f0afbaafb95e3b67eeb87eb6ed52a *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2,AlleleSummation.R
1bc081314a0bf13eb4cda25fb299fe34 *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2,ArrayExplorer.R
27a174a4f780a8a9c1356d2ebdc85bad *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2,GcContentNormalization.R
07f22812c52c18dddbc99680bf272380 *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2,extract.R
18f8ee8e9f2217d565ec7d12dc77c073 *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2,plotACC.R
3e80a545f05de0c120ee0085b386daec *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2,plots.R
3d8a5149e87d78b664d978a29615896f *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2,singleArray.R
fa311dbf466253eebcf1e728507ec0a9 *inst/testScripts/system/chipTypes/GenomeWideSNP_6/21.doASCRMAv2.R
4a0593fdfb05ea5d7ce8f813d7661b3a *inst/testScripts/system/chipTypes/HG-U133_Plus_2/01a.downloadAnnotationData.R
09605f1b0483b1bd86ab02d43afb3d74 *inst/testScripts/system/chipTypes/HG-U133_Plus_2/01b.downloadRawData.R
957f77e629f0380dcd50fe4cc6a0ef55 *inst/testScripts/system/chipTypes/HG-U133_Plus_2/01c.installPackages.R
cd6ba710dc88ce46c1b81f0fe5ebb8d2 *inst/testScripts/system/chipTypes/HG-U133_Plus_2/11.doRMA,PLM,withPriors.R
3c694f92d0426bfa6308a5d423381490 *inst/testScripts/system/chipTypes/HG-U133_Plus_2/11.doRMA,extractForBioC.R
10c438e3b3cbbb780f6443218896bc3e *inst/testScripts/system/chipTypes/HG-U133_Plus_2/11.doRMA.R
88558dcfaf76a360bd192552a5b95491 *inst/testScripts/system/chipTypes/HG-U133_Plus_2/12.doGCRMA.R
c3f4d8cb8728215bc50dceaf036e69f0 *inst/testScripts/system/chipTypes/HG-U133_Plus_2/21.BackgroundCorrections.R
a888a750157a51c3aa0b81686a31837e *inst/testScripts/system/chipTypes/Hs_PromPR_v02/01a.downloadAnnotationData.R
77f70332eda2728dbaa674ae86e059ef *inst/testScripts/system/chipTypes/Hs_PromPR_v02/01b.downloadRawData.R
112bd3206ac461df9796dcc0e2aa7655 *inst/testScripts/system/chipTypes/Hs_PromPR_v02/01c.installPackages.R
cfd515f217e466cbd44cd13a5379a9bf *inst/testScripts/system/chipTypes/Hs_PromPR_v02/11.MatNormalization.R
4b3c4013d62eea9d10a66bdd2634d495 *inst/testScripts/system/chipTypes/Hs_PromPR_v02/21.MatSmoothing.R
c3125da8cadd8ba960fa6c7e3009f2a1 *inst/testScripts/system/chipTypes/Hs_PromPR_v02/31.AromaCellCpgFile.R
4041785d24f95854ea6843df2849fe6e *inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/01a.downloadAnnotationData.R
9d888966f06ddb7712d25d5cc6eb9ac1 *inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/01b.downloadRawData.R
61e72dd6b93a13290ff087c5e09ab38f *inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/21.doFIRMA,QC.R
90598f194724f2bc6c9f3b824a58270f *inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/21.doFIRMA,extras.R
f079b2f990b2aefcc492c5b4cb5b10f8 *inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/21.doFIRMA.R
bb45630e7bbdcc2c4d0f2bd58fb65018 *inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/test20101202,gcrma.R
d3aaad2e98b10208e9b6f0954d123257 *inst/testScripts/system/chipTypes/MOUSEDIVm520650/01a.downloadAnnotationData.R
0ee66e3a988721337732cdcde0eb9cfd *inst/testScripts/system/chipTypes/MOUSEDIVm520650/01b.downloadRawData.R
399fccafe0cf01f21ba5b086c99fae22 *inst/testScripts/system/chipTypes/MOUSEDIVm520650/21.doASCRMAv2.R
17742cee477a8f17fee84a4c72c37748 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/01a.downloadAnnotationData.R
1e15d52902286051a9a49910eb263f3b *inst/testScripts/system/chipTypes/Mapping10K_Xba142/01b.downloadRawData.R
7908681b5c173b735095032a99719ee2 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/01c.installPackages.R
4d89f07a3f2dcf712606d8366e111906 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/10.CDF,groupUnitsBy.R
90cdeaea1a20bb58ac33756d7938c36f *inst/testScripts/system/chipTypes/Mapping10K_Xba142/11.doCRMAv1,SmoothNormalization.R
b8dfe54e228b229307347e3ed3cf0406 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/11.doCRMAv1.R
30770f1cadcbf15a309cfbb8f05f7111 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/12.doASCRMAv1.R
0176dec98a816f7f5f6b1e108714a3a7 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/21.doCRMAv2,CBS.R
79d907e66e0e92ab4ef88c830d2c42fc *inst/testScripts/system/chipTypes/Mapping10K_Xba142/21.doCRMAv2,FLN,zero.R
552a403f6d01db7d570e700dfeaad606 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/21.doCRMAv2,QA.R
153ef88eed0652ef5ae121efd51c47e7 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/21.doCRMAv2,extractAndWrite.R
d08b1c5fc4521538317d4a6399cf9448 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/21.doCRMAv2.R
ccab5795f6e4d400f78f57eb0bda4ed6 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,CBS,ChromosomeExplorer.R
d8dfb09fbb4403c7c8e7ae05f363da47 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,CBS,ref.R
23d2b4382fe407860c4031eeb5bc122f *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,GLAD.R
94a57eb624916b4a4d7f8175355c9657 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,HaarSeg.R
8d7e5e1127d8136493a0b2790f0671ee *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,PSCN.R
e62802dfe3703cbd44d08140a376ee8c *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,TotalFreqB.R
a63b7cd778e1a3821d5691bbfe5bbb63 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,extract.R
cc4545b432166ad6320a6c2a7ca3cab8 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,plotACC.R
640ac08dcf5b100670b127b1b0280d91 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,plots,pairs.R
2810c450ff9262c71f073c05451febde *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,plots.R
449b6541b2b1ce3e3df771769965c4f1 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2,singleArray.R
c9a7d56435d18a0baee3f6f1872a9139 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/22.doASCRMAv2.R
252639c056eaa927a0add48d98c970b8 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/31.ACC,BCN.R
62779d2b604cf87a883451910f076e47 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/31.ACC,mergeShifts.R
fe46ba25010e5db66c11e105f47317de *inst/testScripts/system/chipTypes/Mapping10K_Xba142/31.doASCRMAv1.ArrayExplorer.R
ed935db79e5c98d126e92ed938484887 *inst/testScripts/system/chipTypes/Mapping10K_Xba142/41.ACC,expectile.R
ce5591be8b07e06d5074bbfca51bad06 *inst/testScripts/system/chipTypes/Mapping250K_Nsp/01a.downloadAnnotationData.R
229223d5b80d029e5c6a9fdd44dc72a8 *inst/testScripts/system/chipTypes/Mapping250K_Nsp/01b.downloadRawData.R
4435c8ce274fd5f80ecb94c4c8777d28 *inst/testScripts/system/chipTypes/Mapping250K_Nsp/21.doASCRMAv1,ArrayExplorer.R
4e7b5bbf8e1314bddec01b7d8af8d5db *inst/testScripts/system/chipTypes/Mapping250K_Nsp/31.doASCRMAv2,TumorNormalPair.R
8452a437a31a90c6fc9d27a5717572a5 *inst/testScripts/system/chipTypes/Mapping250K_Nsp/31.doASCRMAv2.R
a86e9dd6fe5f603395ad64dbeb175059 *inst/testScripts/system/chipTypes/Mapping250K_Sty/01a.downloadAnnotationData.R
f6aad6e9b92ee3e47cffb8ced2b6e923 *inst/testScripts/system/chipTypes/Mapping250K_Sty/01b.downloadRawData.R
ba013c8fbfee894e81cdabadc5034861 *inst/testScripts/system/chipTypes/Mapping250K_Sty/21.doASCRMAv2,ArrayExplorer.R
9df04636d6436a06bbdd93006eca90bd *inst/testScripts/system/chipTypes/Mapping250K_Sty/21.doASCRMAv2.R
14b14e26ab38ecbfd341f3af2360eadb *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/01a.downloadAnnotationData.R
eb6ba378433c66ebc6ce82cc0ab7d735 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/01b.downloadRawData.R
b13c7a1cee8bdcfdcdcc7c2f99cacce1 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20070412,100K,CN.R
c0bb0ceb0343cca523b0ff35ec15f337 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20070412,100K.R
31995445231239cfdf3f99e1b56f8b36 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20070922,100K,CN,paired.R
c6e42a56c84ced7e29fefb02b4a1bad5 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20071006,100K,CN,hetero.Rhide
4a3ad1097d00dc344f06f080cda979e0 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20080311,100K,CN,QA.R
3e807a6d44add1f6623ad02a49ee1332 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20080428,100K,CN,allele.R
791a303ea8858c80be94888a01f092ec *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20080623,100K,BCN.R
c9c7fd211c9613cef32ffa1496ce7b97 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20080721,100K,BPN.R
6135a7d46ba9d11c59e4f613693dc13e *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20080730,100K,BPN,alleleSpecific.R
a762745ba6350d1fdfddb9bb50fd75e0 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20080830,100K,ACC,mergeShifts.R
945b9e2fc25abddb5ecba0787456fb89 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20100210,100K,CN,XYbias.R
5f7641c314b33bdd8b48c4e6b0e19241 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20100525,100K,doCBS,tuple.R
0942d3093ecc31794edae789fb12ced1 *inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20100526,100K,tuple,fnt.R
a4c2d2d1fc55f0a4bc484c6372189367 *inst/testScripts/system/chipTypes/Mapping50K_Hind240/01a.downloadAnnotationData.R
022a6840e27024d934659365abb1ae53 *inst/testScripts/system/chipTypes/Mapping50K_Hind240/01b.downloadRawData.R
8df5e6a9377eeed768ab1bebd0afa293 *inst/testScripts/system/chipTypes/Mapping50K_Hind240/01c.installPackages.R
da9154d7fef8b92cd16b4a4a3f0021b1 *inst/testScripts/system/chipTypes/Mapping50K_Hind240/10.CDF,groupUnitsBy.R
ffee598dc0bff05700e2a024374e8d54 *inst/testScripts/system/chipTypes/Mapping50K_Hind240/11.justSNPRMA.R
627e625acacd69b7a6483cf3347a742e *inst/testScripts/system/chipTypes/Mapping50K_Hind240/12.justSNPRMA,CRLMM.R
6ac80c2ecf6884e65ac5489eeb1c8f15 *inst/testScripts/system/chipTypes/Mapping50K_Hind240/21.doASCRMAv2,ArrayExplorer.R
f7bc496553fe2bf775ae76d6457b180c *inst/testScripts/system/chipTypes/Mapping50K_Hind240/21.doASCRMAv2,plotACC.R
ca12de840cd75c83ac64b68c518c9a51 *inst/testScripts/system/chipTypes/Mapping50K_Hind240/21.doASCRMAv2.R
9b3d3866b386ded2f1ed04e105c774ca *inst/testScripts/system/chipTypes/Mm_PromPR_v02/01a.downloadAnnotationData.R
6c17ef3a7f3f62bbc8fe4e4340642590 *inst/testScripts/system/chipTypes/Mm_PromPR_v02/10,CDF,unique.R
019a3d0e016118c8504ddd687629a99c *inst/testScripts/system/chipTypes/MoEx-1_0-st-v1/01a.downloadAnnotationData.R
727d88bc8bd63aae7f5446b58c4c83f4 *inst/testScripts/system/chipTypes/MoEx-1_0-st-v1/01b.downloadRawData.R
0a5e87bb946c633a8ca109f6ca4bdbd3 *inst/testScripts/system/chipTypes/MoEx-1_0-st-v1/11.GcRmaBackgroundCorrection.R
620b8d7c410aa665fb1fa0d2a1f20be8 *inst/testScripts/system/chipTypes/MoGene-1_0-st-v1/01a.downloadAnnotationData.R
3a4ad055db2170aa3aac0484cb330aeb *inst/testScripts/system/chipTypes/MoGene-1_0-st-v1/01b.downloadRawData.R
1bc6ef56b737ec8cfbd9086bc18b4065 *inst/testScripts/system/chipTypes/MoGene-1_0-st-v1/11.RmaBackgroundCorrection.R
d5b985ec659987f36caa377ddb4f888a *inst/testScripts/system/chipTypes/MoGene-1_0-st-v1/12.QuantileNormalization.R
5bf5e1284dbb35a3cba1ec6fecb32729 *inst/testScripts/system/chipTypes/Test3/01a.downloadAnnotationData.R
ae46dd2a21e16a87f2118aa5c679e7dd *inst/testScripts/system/chipTypes/Test3/01c.installPackages.R
6bcf44b2287bfcf927f7de72bdca5892 *inst/testScripts/system/chipTypes/Test3/01d.downloadRawData.R
295f21639903c6f6ed5716381e324574 *inst/testScripts/system/chipTypes/Test3/11.ArrayExplorer.R
bd3ec3572a6793910270502681341a13 *inst/testScripts/testAll.R
4573abb87534470bd1d54973d54a55c3 *inst/vignettes/CRMA,Mapping50K_Hind240,BiasCorrectedChrXY.R
4c0751dc08a38d23a4b1101d0a938c8b *inst/vignettes/CRMAv2,Mapping50K_Hind240.R
1c2c2d56c840fe3f9b988ea00eecd91e *man/AbstractProbeSequenceNormalization.Rd
728adbfe695d82090dc0175c7fb968c6 *man/AdditiveCovariatesNormalization.Rd
2102db8e4013367efbc73b69f91b01ec *man/AffineCnPlm.Rd
08516d6763ffaf19107be3ed84332666 *man/AffinePlm.Rd
a600207caaf9e73a9577c43d3432622a *man/AffineSnpPlm.Rd
fc298037f17adf02dcf8e1c108ef1c58 *man/AffymetrixCdfFile.Rd
fa41bc9b96fb2e0fd26d6d5e847fbfab *man/AffymetrixCelFile.Rd
3f6b52e576c7619259ea75399e160300 *man/AffymetrixCelSet.Rd
ab220190412716effd718eab932e6310 *man/AffymetrixCelSetReporter.Rd
e4212d6d69b23a8c4ce7345e4b4efffb *man/AffymetrixCelSetTuple.Rd
2bb0e96548f3b42c0f6baab0d12c262b *man/AffymetrixCnChpSet.Rd
ca31c8b0fe2fd89e1fed756488e4fe81 *man/AffymetrixFile.Rd
6e8428b85f31c2d690b9473288b6b745 *man/AffymetrixFileSet.Rd
137546727a2e62efb91d3f2fde5b350a *man/AffymetrixFileSetReporter.Rd
44d8057a2d4bf7b512fc6a31eac1ba26 *man/AffymetrixPgfFile.Rd
7799ee305a6f064da7b7ec658d8bff3d *man/AffymetrixProbeTabFile.Rd
04c309583c8b6706b782e758a7240741 *man/AlleleSummation.Rd
454d44ef86d75497819322a41800f5ff *man/AllelicCrosstalkCalibration.Rd
ecdb86e48bf6f6e7742b903029751a29 *man/AromaChipTypeAnnotationFile.Rd
1c2248a800605da0ff4c1cebb9542a49 *man/ArrayExplorer.Rd
b84c36fdc4e03f2f5af0ac5b1c30d519 *man/AvgCnPlm.Rd
2448a9f6645cff6a75c2b6b4844bb905 *man/AvgPlm.Rd
4a9ab75126220d80c5ac2a11dd5ecc18 *man/AvgSnpPlm.Rd
b719dd66aa4f5229e981bb9bff4fe66c *man/BackgroundCorrection.Rd
166bda75bdbd3bdea32fb41c8c51772d *man/BaseCountNormalization.Rd
41261027fd791fcc2ab27f0730ed31c3 *man/BasePositionNormalization.Rd
d17eae96beea5dd0b20a77f9796f0216 *man/ChipEffectFile.Rd
183f9e6daac6eb9b7155948063c8518c *man/ChipEffectGroupMerge.Rd
b85da771af84845a20ce65431d63cee6 *man/ChipEffectSet.Rd
695c7dba4141214143aef372e1f6306f *man/ChipEffectTransform.Rd
8f63f58170c036cb784a8eb99b4b798e *man/CnChipEffectFile.Rd
3dd4decf4ee11dd02663ac312c9bc72b *man/CnChipEffectSet.Rd
37ccbf6f0519675c9f45c8bd18c3a209 *man/CnPlm.Rd
ac51f472c9a5159bf09ece4cadce172b *man/CnProbeAffinityFile.Rd
6cf1f50a2b8c7df29dd02741c56e2576 *man/CnagCfhFile.Rd
51a9700d9766504c365add2ae12e0c7a *man/CnagCfhSet.Rd
37496a3e1817d37064e74936cdcc070d *man/CrlmmParametersFile.Rd
b001ddca09cd6e8139279edcec18fa55 *man/CrlmmParametersSet.Rd
58997d0f9f2389e998af3680386ae82f *man/DChipCdfBinFile.Rd
a224d8cfa4ff08c41e70fef04eff5398 *man/DChipDcpFile.Rd
be7b6b5efdc07ff96e85c231853b5c27 *man/DChipDcpSet.Rd
afb82d06841890718715b33523acdfdf *man/DChipGenomeInformation.Rd
c3df0c8373373469f697fb1d8be086f3 *man/DChipQuantileNormalization.Rd
dee6afdfe1937321c00d48d8d0a67fc2 *man/DChipSnpInformation.Rd
3e06368c41ded40ccc78039d6fa87c7e *man/ExonChipEffectFile.Rd
79d120b93743131e379fb8c6bcd81875 *man/ExonChipEffectSet.Rd
65750e6031f68129e5ffd6e7ed30856a *man/ExonProbeAffinityFile.Rd
41ac70cb3c7e5a87369a621595e69311 *man/ExonRmaPlm.Rd
800701f932cfc73d073aac11979b2bcb *man/FirmaFile.Rd
51a1ae8986050904f637a8dcf98eaf24 *man/FirmaModel.Rd
d4fb7bc52d397d307228f876b488f192 *man/FirmaSet.Rd
e8950d2f6341a1e7d2911155c3500b3d *man/FragmentEquivalentClassNormalization.Rd
1c36ddc0df516188b67cf4d1f5125ab4 *man/FragmentLengthNormalization.Rd
bde40637fa7d18289b84230368560ec4 *man/GcContentNormalization.Rd
56c93f545098f6e5cd67d1f246366b8c *man/GcContentNormalization2.Rd
f2bfaa7406cc1a113a61277d80806f37 *man/GcRmaBackgroundCorrection.Rd
90fd0550794a0422f9a8cd7ff9287e9e *man/GenericReporter.Rd
590e1310b20bba3d6d4f188699bf61fa *man/GenomeInformation.Rd
f32d27d055eb7f4c4759a938ebf17555 *man/HetLogAddCnPlm.Rd
a9ebfda5a7438921a8d7e3031f552ec9 *man/HetLogAddPlm.Rd
6a4fbb74f22254384e05cd4c7a378d35 *man/HetLogAddSnpPlm.Rd
5ad31b5c8d9c63e98ac6d2b77ded1f20 *man/LimmaBackgroundCorrection.Rd
aa88699f0a1e057855c97f145a6c0c8a *man/LinearModelProbeSequenceNormalization.Rd
54bf62074e84bcbc0fa8040c6abff19c *man/MatNormalization.Rd
5a8a202360f1b11e22a37af2cb9d8368 *man/MatSmoothing.Rd
83397f45211ac8b61a4e826f5a15aab3 *man/MbeiCnPlm.Rd
2270621dbc3aadca9b8489ebbef914b9 *man/MbeiPlm.Rd
efd82c4f1ed4bbcc3963036e9a95cb25 *man/MbeiSnpPlm.Rd
466eb89b396dd7bdc9822429478c6ecd *man/Model.Rd
cb7fa8e83f6a7834c3cff685b7650f42 *man/MultiArrayUnitModel.Rd
ce3482c1115f44183239fd0c9d6c3560 *man/Non-documented_objects.Rd
e33b81a6a01c02b2863b449ba6dd0876 *man/NormExpBackgroundCorrection.Rd
959fa2e5e68778b7016406f32bb2735e *man/OpticalBackgroundCorrection.Rd
19b3b0f17d7613dc90eea6e7a91af01f *man/ParameterCelFile.Rd
3b30fc662607d73bf5e8491e214bfef7 *man/ParameterCelSet.Rd
25a6a5af37af94eff6c6bab3f1c220b9 *man/ProbeAffinityFile.Rd
b2e7636fea77fedece75811151914ef0 *man/ProbeLevelModel.Rd
b3a34a58ac6ce726e807f7cf54ee11c6 *man/ProbeLevelTransform.Rd
ea5c43a32b7de02d30826c36b72a5df7 *man/ProbeLevelTransform3.Rd
66d067e8e1e10779ab3116c660b3864d *man/QualityAssessmentFile.Rd
4962317f186c0524406a16794c205a02 *man/QualityAssessmentModel.Rd
a777cfe1e9a056fc57af9de4ba0bd189 *man/QualityAssessmentSet.Rd
fec65bc99dafab145fe5140eb51610d8 *man/QuantileNormalization.Rd
357275d6b13535eff7ae3ba453d09438 *man/ReseqCrosstalkCalibration.Rd
550d3d56c2df146c1f08f1772bf68071 *man/ResidualFile.Rd
0241300182871b7d5ede05377c79857b *man/ResidualSet.Rd
c86e352fe63891ffa1750a60bd49ee1f *man/RmaBackgroundCorrection.Rd
6ff80a81efd65687e9c4e6637e21e003 *man/RmaCnPlm.Rd
23a0436ac5d4587cf377ab2b0b515a54 *man/RmaPlm.Rd
34bed38a590a3847ea89bc68b7c3cacc *man/RmaSnpPlm.Rd
09ff21af7af92fedbc3e223975dbd03a *man/ScaleNormalization.Rd
83b3d2ab7c243eb79520b14935544f52 *man/ScaleNormalization3.Rd
10de2d03ca2a6dc516220a7e42bc1c74 *man/SingleArrayUnitModel.Rd
a51d36c9ae64ebfde1b27563c18846aa *man/SmoothMultiarrayModel.Rd
147831e1df71d9b23e568f8bd8d06927 *man/SmoothRmaModel.Rd
6f7cef6c94e7fae9ddb30c2e8d1eaf38 *man/SnpChipEffectFile.Rd
94ebece57c4fc0b6431f88875d59917b *man/SnpChipEffectGroupMerge.Rd
f5c06195376ca4b72771fa6074699407 *man/SnpChipEffectSet.Rd
c8055a8be605679667d2ab368d0d525d *man/SnpInformation.Rd
e3a50ccf0e99b8ed91188a3de30a9e50 *man/SnpPlm.Rd
8587979a1452d34a72db778285a14d3b *man/SnpProbeAffinityFile.Rd
32459e7f75d07c46381b58f6f0cd6e8c *man/SpatialReporter.Rd
8025adf91f7f5a181d4061aaee4d1e19 *man/TransformReport.Rd
42c2b3cdfd1c925df3a5470a70a6c470 *man/UgpGenomeInformation.Rd
dfe5a89452d5df94b3b24845fc2d06a7 *man/UnitModel.Rd
c6f20722a381cb911cc1198a8f0cc37e *man/UnitTypeScaleNormalization.Rd
e2042bd599173f394e366cab6d80ddea *man/WeightsFile.Rd
a6adf7487b04c954bb0c7b584e69615d *man/WeightsSet.Rd
4cc2ab58fd3480e98da0631f0ac81984 *man/allocateFromCdf.AffymetrixCelFile.Rd
70b541854ce6548ad6ee64112c36a9b7 *man/allocateFromCdf.AromaUnitTabularBinaryFile.Rd
035165e684bd6840ab6d1d5c702128d0 *man/aroma.affymetrix-package.Rd
ec39c9007aac738c2ed6af58d125ae9f *man/as.AffymetrixCelSet.AffymetrixCelSet.Rd
c987a76e747fe090385b5fe9d9e4060d *man/as.AffymetrixCnChpSet.AffymetrixCnChpSet.Rd
729a7546320bfaa03c23b3d6d9c6bf78 *man/as.AffymetrixFileSet.AffymetrixFileSet.Rd
e6317fe0f2e31897fb3f180bbda7d18d *man/as.CnagCfhSet.CnagCfhSet.Rd
b3af3b0de916b47fe21ed5753b4eb301 *man/as.DChipDcpSet.DChipDcpSet.Rd
5b736c54fa3e6c98e87427c4b51037ce *man/as.character.AffymetrixCelSet.Rd
425f8ff5c980baced6aa745686ecf3a2 *man/as.character.AffymetrixCnChpSet.Rd
2ecc6997eea7cec39b1d871ab3623d54 *man/as.character.CnagCfhSet.Rd
e96bf173d69cab1a18cebb67061180e7 *man/as.character.DChipDcpSet.Rd
aed61ca1df91e1428b1d870f79c9eef6 *man/averageQuantile.AffymetrixCelSet.Rd
92fd978bc1ae4168fa12eca36d6dd1b6 *man/bgAdjustGcrma.AffymetrixCelFile.Rd
7e61dc9aa4ecd57452a066114087335f *man/bgAdjustGcrma.AffymetrixCelSet.Rd
fd9b2f247009043fc521967995849b3f *man/bgAdjustOptical.AffymetrixCelFile.Rd
45db34b8873b841d6f3382f5bff25c8f *man/bgAdjustRma.AffymetrixCelFile.Rd
4656dae59b215733323888f76c78c48b *man/bpmapCluster2Cdf.Rd
16a647ff2556a68955afa373fff2ede9 *man/byChipType.AromaChipTypeAnnotationFile.Rd
631e50c169a897ec719fe577a8f363f9 *man/byChipType.DChipGenomeInformation.Rd
726fc27b8f555344433c7dd5d7e6cec6 *man/byChipType.DChipSnpInformation.Rd
412be00d6a82140e8153f302de1abf9f *man/byChipType.GenomeInformation.Rd
d241e4262ec214d73d6162b4c2eb4e3b *man/byChipType.SnpInformation.Rd
8161ca4fc8c33cfdceb7277797642857 *man/byChipType.UgpGenomeInformation.Rd
171b9cc167081cd3758f14ca1afa35a3 *man/byPath.AffymetrixFileSet.Rd
1f8ffa9d9f1504381a531ca269193020 *man/calculateBaseline.ChipEffectSet.Rd
f5ac30e335657efae1206e4346f8a3bb *man/calculateParametersGsb.AffymetrixCelSet.Rd
3df48f300e0b982f630b2434a42f4431 *man/calculateResidualSet.FirmaModel.Rd
ff41b8a1c0e2e9050b7da6d20ceace4e *man/clearData.AffymetrixCelFile.Rd
0533dffb18c21a880846378a89221f7e *man/compare.AffymetrixCdfFile.Rd
cbf6acb68fef38c50618947792b143fa *man/computeAffinities.AffymetrixCdfFile.Rd
fdb26ad91c1a8efc284463111dbf316e *man/convert.AffymetrixCdfFile.Rd
c30041ceb7299260bb31e96b692782c2 *man/convertUnits.AffymetrixCdfFile.Rd
c2913dd3659aeb64af5b3053c0ab18bc *man/createExonByTranscriptCdf.AffymetrixCdfFile.Rd
8a57a14503786242fe69c6c48cf65760 *man/createFrom.AffymetrixCelFile.Rd
e5dceeaa29853bb91bd02fd641af4842 *man/createMonocellCdf.AffymetrixCdfFile.Rd
a60faf4f0f583261e855f0a440043a39 *man/createUniqueCdf.AffymetrixCdfFile.Rd
9446cf8e981c8abe8c1e1651b547da83 *man/doFIRMA.AffymetrixCelSet.Rd
88d7079cb2814f168bc414a11828c415 *man/extractAffyBatch.AffymetrixCelSet.Rd
a4378db6be0f37e854c67476501293a6 *man/extractDataFrame.ParameterCelSet.Rd
f3d1565f6f64514c57401b916d69457e *man/extractExpressionSet.ChipEffectSet.Rd
e9d6829174cf325043709eb757eaa3dd *man/extractMatrix.AffymetrixCelSet.Rd
065b87c297258306730db1fb085516e0 *man/extractMatrix.ParameterCelSet.Rd
7ac6f8cdc2897a5b838e7fa5f0dd8242 *man/findByChipType.AffymetrixCdfFile.Rd
5a14a6bd6709442d25b3ba0038471dd3 *man/findByChipType.AffymetrixPgfFile.Rd
70385de6e63d320b4f70f5895fc0a47e *man/findByChipType.AromaChipTypeAnnotationFile.Rd
25d934e5d84d377215800261b83a4b5d *man/findUnitsTodo.FirmaModel.Rd
c6b16feb825d8ef4d30c3a61a47d5b8d *man/findUnitsTodo.ProbeLevelModel.Rd
f104350d931d1a0c42c5dac6e9790e16 *man/findUnitsTodo.UnitModel.Rd
4cda33410b8e7924b1ded38f13890423 *man/fit.FirmaModel.Rd
212de601623177ab84f671866009d07e *man/fit.Model.Rd
f81c54af4f9d83efb25a09d6274737f4 *man/fit.ProbeLevelModel.Rd
c286f43db633192b49f4c324c7a5c5b1 *man/fit.SingleArrayUnitModel.Rd
3fb6274e4eaab6ac73d36aae0452a2ce *man/fit.SmoothMultiarrayModel.Rd
d45c47d57553edbb842f6b0087f12b4f *man/fitQuantileNormFcn.AffymetrixCelFile.Rd
7e59412651b7929fde7ed6a43ba8d7f7 *man/fromCdf.GenomeInformation.Rd
1fb173d3f1a47e10bba82c5ca624bb71 *man/fromCdf.SnpInformation.Rd
3294c23539c5cbcfbf4798fb045c98c1 *man/fromDataFile.ChipEffectFile.Rd
57a12df853b4c7709c6b378b1e3b2000 *man/fromFile.AffymetrixCdfFile.Rd
87393531ee0c36d7fac6577b869ddf00 *man/fromFile.AffymetrixCelFile.Rd
fbb4a6064defa1a8fe7b5c0c54b71a9c *man/fromFile.AffymetrixPgfFile.Rd
dd70e447778e5cc6f0b6f90b63a0c6f9 *man/fromFile.AromaChipTypeAnnotationFile.Rd
c1a8a83ef1896cc527bdf13c744907b6 *man/fromFile.CnagCfhFile.Rd
b3c3a79e7dcd0dd7383d2827784b79df *man/getAM.ChipEffectFile.Rd
c5781dbd57125bb7f444942667b0cefa *man/getAM.ChipEffectSet.Rd
bb9782ab068985bf39a02bdda16e7e6e *man/getAlias.GenericReporter.Rd
a4fb8c1d5815e3380380529cdfafbfb7 *man/getAlias.Model.Rd
7e5b47e3cd8bb4b2fbe65367fcce02cb *man/getAlleleCellPairs.AffymetrixCdfFile.Rd
5548a9037fd76e835a2c3526e62a5155 *man/getAlleleProbePairs.AffymetrixCdfFile.Rd
4b59654a66dbe0d5cea2e288bf63af1d *man/getAlleleProbePairs3.AffymetrixCdfFile.Rd
c07c981520a52fd55776d0e6d5879145 *man/getAverageFile.AffymetrixCelSet.Rd
700995030ce947c8c4f71d3457f6e64d *man/getAverageFile.CnagCfhSet.Rd
c86cc50e3bed4aabe80ef65d8d999485 *man/getBaseline.ChipEffectSet.Rd
64158711c5e4dd17d409200dc42b42c6 *man/getCdf.AffymetrixCelFile.Rd
547abf4c8fd7629954116b89988064a0 *man/getCdf.AffymetrixCelSet.Rd
29716d9894b2a6f2b9d64107bc8227e1 *man/getCdf.CnagCfhFile.Rd
6f5662c9587989570c2f40ab36b50ce4 *man/getCdf.CnagCfhSet.Rd
515deeb3d7533f6936d72847bdb89f3f *man/getCdf.Model.Rd
b5e01b49490c8c705cd0ba8b09ad5862 *man/getCellIndices.AffymetrixCdfFile.Rd
0bd4a0ac1603b38dfb06e93a421f840c *man/getCellIndices.UnitModel.Rd
42b32bb873e3e34aa984d3a1ffdc832d *man/getChipEffectSet.AlleleSummation.Rd
b3613d2f6a5598cf9f88906fd797501b *man/getChipEffectSet.ProbeLevelModel.Rd
72edf69f02383165b871276d5c790240 *man/getChipType.AffymetrixCelFile.Rd
7d9340b7db64a3ab662fed06868d5dba *man/getChipType.AffymetrixCelSet.Rd
b96824ad350f014c020f9f7e676bcfbe *man/getChipType.CnagCfhFile.Rd
bab55d6ed516eeb5869a531808203290 *man/getChipType.GenomeInformation.Rd
d759489e0e3fc2ce67e34925a73f7aca *man/getChipType.SnpInformation.Rd
be567f7ec71e97979f456f80dbed6f74 *man/getCnNames.AffymetrixCdfFile.Rd
27f0e235b066b45ab940c46630928943 *man/getData.GenomeInformation.Rd
d0e0819bfa2f3984475c312fe433474e *man/getData.SnpInformation.Rd
d9123e6bf49dcbb3758d482454233f57 *man/getDataSet.AffymetrixCelSetReporter.Rd
25f581e54ea36e7222e4a9a05d955349 *man/getDataSet.ArrayExplorer.Rd
0abf695b21ba6a2b4256d5c213cf6bc0 *man/getDataSet.Model.Rd
0c4a008077761e2f955af00597f96791 *man/getFirmaSet.FirmaModel.Rd
af18a4ebd21f684405043e3af8c4c8e1 *man/getFitUnitGroupFunction.AffinePlm.Rd
7e9902345177acc3e6065fa5a5857a76 *man/getFitUnitGroupFunction.AvgPlm.Rd
90f4fc2ce3139cc476ad50505c33ff6f *man/getFitUnitGroupFunction.ExonRmaPlm.Rd
5468ea53c2d268a24159065712f7f790 *man/getFitUnitGroupFunction.FirmaModel.Rd
fcb53a9974392e1aac5730f875b7aa7a *man/getFitUnitGroupFunction.HetLogAddPlm.Rd
c7beb9a6041bc72947161ff9530432c1 *man/getFitUnitGroupFunction.MbeiPlm.Rd
ad07162fd82377d1512dde5cc07467a1 *man/getFitUnitGroupFunction.MultiArrayUnitModel.Rd
e85ad454d8ec1932875a799409a12851 *man/getFitUnitGroupFunction.RmaPlm.Rd
6b9b60642687150233b5558e0912adff *man/getFitUnitGroupFunction.SingleArrayUnitModel.Rd
aa53fba59e54c93af5a88b3d61949f10 *man/getFullName.Model.Rd
de4a0b0590712ec562e9ab7539be1de5 *man/getFullName.TransformReport.Rd
7fec9caa5cf4d916d1b3116f1ea55328 *man/getGenomeInformation.AffymetrixCdfFile.Rd
b2b8ea7edbd844ea4d2e58d03a717d9c *man/getHeader.AffymetrixCdfFile.Rd
2a9862cd40b15ee4960057ef2417b93a *man/getHeader.AffymetrixCelFile.Rd
4120f5042b2bbef26d2c640ea978de10 *man/getHeader.AffymetrixPgfFile.Rd
7d812a46669c2eeb5922a98ff5b55fe2 *man/getHeader.AromaChipTypeAnnotationFile.Rd
e90504acc9dd5bff57179452d047c149 *man/getHeader.CnagCfhFile.Rd
21bc4bef43adb9510f9ebdde5d686193 *man/getImage.AffymetrixCelFile.Rd
d31ebf8131d008e2c576d8eeca6fb47a *man/getInputDataSet.TransformReport.Rd
49b60227a1224fd9164da45e93dd279f *man/getIntensities.AffymetrixCelSet.Rd
ed3562a4f03201675e1cda0922f9e208 *man/getName.GenericReporter.Rd
4770be7aca3de500f0ac0c0c2f7d4492 *man/getName.Model.Rd
3842310ebd787651d1a737ed7a26dd6e *man/getName.TransformReport.Rd
ea7a45a15b50a36d902a3d5376c49884 *man/getOutputDataSet.Transform.Rd
1988ddacc7e2d4ac200878890a4e48c0 *man/getOutputDataSet.TransformReport.Rd
fa3c0caf33e3bca5a72f6a251c343228 *man/getPath.Model.Rd
191f00f9b5245e4a4f136484911211cd *man/getPath.TransformReport.Rd
1d9659033f6a89e47a7ea0f0dfb29675 *man/getPositions.GenomeInformation.Rd
4f9b81bd1f8edf61b1216cc2b542aa06 *man/getProbeAffinityFile.ProbeLevelModel.Rd
479549d6b5000fd97a3358ebc8a5514f *man/getResiduals.QualityAssessmentModel.Rd
859ef88c89fb73d9e6d64fae1b696899 *man/getRootPath.Model.Rd
bc1cafd24ee89febc27d8818beec0f99 *man/getSnpNames.AffymetrixCdfFile.Rd
11f5fe70c87a69471df84bbeb497ec50 *man/getTags.GenericReporter.Rd
32fc44af99b212a39474b3475f49eae3 *man/getTags.Model.Rd
64f11ec00caf3b8ef2743db05808471c *man/getTags.TransformReport.Rd
0ad90327b1ce2e03d0346b53cb86224d *man/getTimestamp.AffymetrixCelFile.Rd
fe034a1dd900d5e30b4dd0dee08171e9 *man/getUnitGroupCellMap.ChipEffectFile.Rd
ca54f1d293fa101e0bbdaf14cd882ea4 *man/getUnitIndices.GenomeInformation.Rd
44aa45b39ea5f872adec913475548129 *man/getUnitIntensities.AffymetrixCelSet.Rd
3116735ee3065c8d474148a16fde3609 *man/getUnitNames.AffymetrixCdfFile.Rd
c33ca0b37ca809197f3a57fbc81a83f4 *man/getUnitNames.AffymetrixPgfFile.Rd
52af6d6e998f1577d9530abe7f778f03 *man/getUnitTypes.AffymetrixCdfFile.Rd
175863e701444167958ff7a355f74860 *man/getWeights.QualityAssessmentModel.Rd
d1edd52192e6b6b6f46b7f71e2962032 *man/getXAM.ChipEffectFile.Rd
2d0d31087223293a94ebaa5561f2e79f *man/getXAM.ChipEffectSet.Rd
f63ec025bd812f6d6e744b1bf3e8cecf *man/groupUnitsByDimension.AffymetrixCdfFile.Rd
25e166146ae9a4ebc24c1c0ebe1df2e1 *man/image270.AffymetrixCelFile.Rd
6ec12f08aa42c0c2d22b90de7dd54fb8 *man/importFromApt.CnChipEffectSet.Rd
0c41ab9bec90e7267935fd6a32828480 *man/importFromDChip.AffymetrixCelSet.Rd
cdf34e21d2b5b6c9391f53626f2b5210 *man/importFromDChip.CnChipEffectSet.Rd
e264fbb2c3eee9e6a6a4bb765675cecf *man/isDuplicated.AffymetrixCelSet.Rd
e587bbeb84afa4471efef053d9e962b2 *man/isDuplicated.CnagCfhSet.Rd
314be0f19bd3b3fb12bf545f8a2fe50a *man/isPm.AffymetrixCdfFile.Rd
513b2a0d9f3a224ec5b7258d91f223b7 *man/isResequenceChip.AffymetrixCdfFile.Rd
2aff465df2f4d78b09170a4fa7a064cc *man/isSnpChip.AffymetrixCdfFile.Rd
acd9309e5f441d430ba1acdbf90d29d5 *man/nbrOfArrays.AffymetrixCelSet.Rd
7873f96632085806743918364c4ad769 *man/nbrOfArrays.AffymetrixCnChpSet.Rd
dead710ee289825c90fe714d145118dc *man/nbrOfArrays.CnagCfhSet.Rd
05f05bc2618ccb6cf71464892f793499 *man/nbrOfArrays.DChipDcpSet.Rd
8f231d251112874d4fc7416065464d5f *man/nbrOfGroupsPerUnit.AffymetrixCdfFile.Rd
2f7c33d7ec075b7e375d8f6b708b3a4e *man/nbrOfSnps.AffymetrixCdfFile.Rd
99a58ceefa2ce3a2d5dc3cbed405c60b *man/normalizeQuantile.AffymetrixCelFile.Rd
e8ac9d3471c7d8551f321dbe9eec1bf1 *man/normalizeQuantile.AffymetrixCelSet.Rd
d0c7bf8cebb93acebd17da62c7a33a84 *man/pdInfo2Cdf.Rd
1909f4c57cbb025a9e6b460c2108e7b5 *man/plotBoxplotStats.list.Rd
540175a2ef16c8621352f7c331c47f73 *man/plotDensity.AffymetrixCelFile.Rd
b060740840aa617a1f3e4b6757a50d5e *man/plotDensity.AffymetrixCelSet.Rd
10d77f3d4f75c96d6d2961454e98c7ee *man/plotDensity.GenomeInformation.Rd
7405ef1af096196ba7e9a8a2da658eab *man/plotImage.AffymetrixCelFile.Rd
08a1c8ece43c6a875fb1a467a3a06a6c *man/plotMvsA.AffymetrixCelFile.Rd
accdf150185fdbab9c3fa04d7b9a0d5c *man/plotMvsX.AffymetrixCelFile.Rd
d088631741bfe6867c01883436c88a67 *man/process.AbstractProbeSequenceNormalization.Rd
875b8017e224373b0545b327fb681d77 *man/process.AdditiveCovariatesNormalization.Rd
f9b04f3a64ec638d849fe8648759d530 *man/process.AllelicCrosstalkCalibration.Rd
ae6ba27329994ebce6f57417084b11c9 *man/process.ArrayExplorer.Rd
959d1cbf888f38d4d57d383e9250dc5f *man/process.BackgroundCorrection.Rd
09a8dd78eea30dbafb741dab0f2e7035 *man/process.ChipEffectGroupMerge.Rd
3b72fbe203bc4417710c789972b85a41 *man/process.DChipQuantileNormalization.Rd
75955edeaf647a3989afcc32bdd0a70d *man/process.FragmentEquivalentClassNormalization.Rd
f874694e523654f00a5e261f0c979375 *man/process.FragmentLengthNormalization.Rd
ac27890072d9a478b4d886573765fe66 *man/process.GcContentNormalization.Rd
8cdf6d68b2d0356fa19e1c82fd571abe *man/process.GcRmaBackgroundCorrection.Rd
2967b51c91a3852dbdc6a7667ea77bf8 *man/process.GenericReporter.Rd
e92eea2ef4c28d24e56d14aede4ea341 *man/process.LimmaBackgroundCorrection.Rd
a182a81dc91c61d459c91bb6b20bbf45 *man/process.MatNormalization.Rd
c9fc8d8067502fd0a1600f5028e40f9c *man/process.MatSmoothing.Rd
120393addb2a2b548ca5ad55d8a44899 *man/process.OpticalBackgroundCorrection.Rd
f0daface7827ed5bf156c1140db4575b *man/process.QuantileNormalization.Rd
34e7043f47dca0eb9c59c19b833d6c41 *man/process.ReseqCrosstalkCalibration.Rd
a7e0fa2f8463392557770b3f1eddd000 *man/process.RmaBackgroundCorrection.Rd
7a976c74bd3fb1cfc800d258f9b800b4 *man/process.ScaleNormalization.Rd
fcf1dbf739dc0fbe46a802f0fe2493c6 *man/process.ScaleNormalization3.Rd
3386be222c5ec20d603369b4689ad1b6 *man/process.SpatialReporter.Rd
42acbf0dfbfbe5aeed32fd87c09c2416 *man/process.UnitTypeScaleNormalization.Rd
ca66b65145097a73d6d97ffd5717699f *man/readRawData.AffymetrixCelFile.Rd
82c52042192ebebda5759c5ccec8bc64 *man/readUnits.AffymetrixCdfFile.Rd
1dd8f3aebe39eecaa001ba68d5a8e31d *man/readUnits.AffymetrixCelFile.Rd
526f747fe8dc55773f42a6c0ab8f1dc0 *man/readUnits.CnagCfhFile.Rd
46ae59cea19315d9323155e404924f26 *man/readUnits.MultiArrayUnitModel.Rd
ab2e5a7ce7e19ebaa84367c948a00e8d *man/readUnits.SingleArrayUnitModel.Rd
4cacc59c155f01080580d4a424e9b420 *man/readUnitsByQuartets.AffymetrixCdfFile.Rd
c408a00c5ed19b7fddef650d1163d9f7 *man/setAlias.GenericReporter.Rd
bbc97eababbac00db3a37ce79238dec2 *man/setAlias.Model.Rd
ace3f7f6e32f0665a3898602d851862a *man/setArrays.ArrayExplorer.Rd
623a3d3c6997f11a470c17c9638ade11 *man/setCdf.AffymetrixCelFile.Rd
72eda7e4e25cf14ca2032a2645922001 *man/setCdf.AffymetrixCelSet.Rd
d1fb86619aca9dd611897735f983d5db *man/setCdf.CnagCfhFile.Rd
028e443a90a1c57236dbb0c22ab00ef3 *man/setCdf.CnagCfhSet.Rd
092a03501595c79867523f04c83514a1 *man/setRestructor.AffymetrixCdfFile.Rd
4c8bb6fd9d5b91f8a1132b2e3e64f185 *man/setTags.Model.Rd
b230e93cc3e7077124a2eec610e76c88 *man/smoothScatterMvsA.AffymetrixCelFile.Rd
7cd4b692412fe41383b57ae47700816d *man/updateUnits.AffymetrixCelFile.Rd
cb749d542ae89db734d653649b2b5028 *man/verify.GenomeInformation.Rd
8118588a17c930b119ca06957df2f3f1 *man/verify.SnpInformation.Rd
4d476c93b7a747a013216a3f0d6de088 *man/writeCdf.AffyGenePDInfo.Rd
da0d8cc43ff7811c0300f36a05acf264 *man/writeImage.AffymetrixCelFile.Rd
