a1e76c17e5d41491563f6469dd66a7a4 *DESCRIPTION
413fe8c26932b250cb8d80bd808da2ea *NAMESPACE
62743a3d81d852d2df6451019938dda1 *NEWS
c351b77d12bfa5c121e76a545b53a794 *R/accessors.R
bd8d901b98abc42a4f2a2b0636caf28a *R/add.gaps.R
0571eb4d2efb6c6fb194763d6747e974 *R/concatenate.R
03a3f74a056bb6892801cdc1b861a362 *R/datasets.R
4f69de110fd20dd36aee1b17d6e26e95 *R/dist.R
1e5dc30227fc2ece3ffe3eb57b530f7b *R/doc.R
672d6cddb0fe329aba23db5566c860b9 *R/exports.R
b80a27b5831f4e2594d5db38e4d480f2 *R/getTree.R
4403c757553d0637b30d5e3674045b2e *R/internal.R
59ff39655b8dff0678bf46fbd7428d6f *R/multidna.class.R
6923edd4c4dbfbf08540990c8621eb1f *R/multidna.constructor.R
2747e1d5996028819da74d682e7d0e38 *R/multiphyDat.class.R
2078f980e3ce63e1a3114730e4bd5c22 *R/multiphyDat.constructor.R
9668eb892ad6c11b7c70b49f6d8c094e *R/plot.R
e20cf1f4592d27f5e3718a294746d4d5 *R/readfiles.R
86d226e0854ba820197cd8b73e1e0da5 *R/rm.gaps.R
e023513df92d033507f5c8922de3aef0 *R/show.R
f9c4eae8d7e808f31cbd77c99f75a50a *R/subset.R
534a158d5eea4213dd1a36ee436ab4c2 *README.md
3e125597a99c97d736598c26c705815e *build/vignette.rds
9e28a3781a839b6652a1e20dd7c29e4d *inst/doc/apex.R
124534783206773fc894ff8f504486d2 *inst/doc/apex.Rmd
0506d2b00800449ae78904de143864c1 *inst/doc/apex.html
9153e1e71df1d0ffdaee7e69f291b93b *inst/patr_poat43.fasta
49ae6851973377bde9287e1f12e17039 *inst/patr_poat47.fasta
80b8bdab91a3bd769896fb921d670562 *inst/patr_poat48.fasta
b261f01a6b74f7ef51f605faac4fd68f *inst/patr_poat49.fasta
3e2da52755efaf080928a3a3851e90b2 *man/accessors.Rd
592ff2f18d9ce8b16a15545422e70aeb *man/add.gaps.Rd
892561ad08a43c1b0f7704976c7fd5e5 *man/apex.Rd
c8cd7e280c2b5c830836c13b6857a2f2 *man/concatenate.Rd
0bf2cf1b46ab8c0f80d33c89473cfb28 *man/dist.multidna.Rd
dd11b29c161d555c43a59d09b4e358bc *man/getTree.Rd
b8a1117398a9b5f0ec3e1d1f500974fd *man/initialize-multidna-method.Rd
952a2cb8f51eb5564cc016f7941f6458 *man/initialize-multiphyDat-method.Rd
5d5b0d91bd8948042b74075c077fd99b *man/multidna.Rd
67a0738fc5a1fa1a9b84498a21ed825a *man/multidna2alignment.Rd
0b71ec16048fa1c8d5948c015620837c *man/multidna2genind.Rd
dc97795aabcd7f1a73299a5d99bef70b *man/multidna2multiphyDat.Rd
e4dd9ba6a069f13bc2ad577337fc6ae7 *man/multiphyDat.Rd
25187aa5ce283843ee7efe21e625bd3b *man/plot-multidna-ANY-method.Rd
3c64db06a982cdbd300a71c861f13fc4 *man/readfiles.Rd
b9db47b8573d24a8fb84b348fc7c1f89 *man/rm.gaps.Rd
f0e3d8cfd6b380ee145daf44cbea5fae *man/show-multidna-method.Rd
77a61413b5373bdbf0de7ab3d8e90392 *man/show-multiphyDat-method.Rd
1308bcfbd8938a2efc781008b31ee198 *man/subset.multidna.Rd
77cae94d75d005e65dc4860894d61e2a *tests/testthat.R
0729339aeed636286b479f53621bcef7 *tests/testthat/test_export.R
124534783206773fc894ff8f504486d2 *vignettes/apex.Rmd
f512f3d9d0de04c38c4496c1caf73e20 *vignettes/figs/class-1.png
4329f4dcb0537b6d5217953933822f99 *vignettes/figs/class-2.png
0a2dbbad59b5b9216350a89d59fff40c *vignettes/figs/concat-1.png
5e05cd791a40f4de97f8d4de654d78d5 *vignettes/figs/concat-2.png
04028ac2af998300412d579b96e085e9 *vignettes/figs/handling-1.png
856fa453097bdb93e8d1bc2d089fd230 *vignettes/figs/handling-2.png
f2f0cc9f8faac597488ef19799f5472a *vignettes/figs/multidnaclass-1.png
07ba4956a95a026ee5198321fbaaad18 *vignettes/figs/multidnaclass-2.png
c3eac1660eb75c2e984302ec4b850d4c *vignettes/figs/plotMultiPhylo-1.png
66ceae9628f0f84736bcb7d941cfa091 *vignettes/figs/plotPhyloSingle-1.png
3cd46e6ea91cfdc35286428e6e0245ba *vignettes/figs/plotPmlPart-1.png
04028ac2af998300412d579b96e085e9 *vignettes/figs/readfiles-1.png
