c184f51c46d77a4d97debf30b3545c81 *DESCRIPTION
45b58b0d0985a9ba19973c6c6f274cf7 *NAMESPACE
af5aedf87c6209d58acd40bd3711f79b *NEWS.md
c1406b01774cdfd87fa3bc7500109560 *R/RcppExports.R
00fb9642fd5ca2b9e74ce18e8e108e32 *R/adjclust.R
b08f9ae47e673049a61d5b0b1c3edc0d *R/buildHeap.R
8e9e4aa24a2033eed5ba67ea6bf5ed08 *R/chac.R
724d3beb652e3932076d96c0f7c20d5c *R/helpers.R
3a0fb6a7cd6859a428a256dc675ec515 *R/hicClust.R
24ef9688799a525d6aa10679b1c71207 *R/plotSim.R
54e6c1d133ca5a364bb62806954ee01a *R/snpClust.R
e8caefc562251e633736204314c26a12 *README.md
e3518807107682f590595ef6795b94a2 *build/vignette.rds
263bdf0f6c0cb1aeaae0e85bf5f6d494 *inst/CITATION
ebeab92a3e1877e7104e94a887e37ec0 *inst/WORDLIST
b253ab7270e1b2645f6aef99f9f096d4 *inst/doc/hicClust.R
a053f2db6cc09f6e532cb836ec4b1c07 *inst/doc/hicClust.Rmd
9d1e4be8d5402cb7a41475dcea770bbe *inst/doc/hicClust.html
7341d2906511fc6825b4d33b7a695329 *inst/doc/notesCHAC.R
cd72aae0d249ee07fb322d21732cafd1 *inst/doc/notesCHAC.Rmd
5b51edb9c19610a2488dea279c9587b8 *inst/doc/notesCHAC.html
50f644a4571e18e1ffba23eec6e65414 *inst/doc/snpClust.R
36938884fab89261f065da8ba73df071 *inst/doc/snpClust.Rmd
3aa2068e231a7f4667416a4d1c793cc3 *inst/doc/snpClust.html
dd6726c6c4b30f3cea804183395128eb *inst/extdata/hic_imr90_40_XX.rda
1e8659d605ac23dbd53c9b00d95bbb52 *inst/extdata/res_adjclust_0.3.0.rds
bd492a22b4201740430f97be6b6c45fe *inst/extdata/sample.txt
abe469addd68c05b93241b7ddf51ab7f *inst/system/createExampleLDData.R
8a7f67643f909f889d8f2efcf825ca00 *inst/system/create_hic_chrXchrX.R
ab247bcc85e5b115f6bb89fbde548770 *inst/system/create_prevfit.R
dd695bd79b2f16848c680435466c795d *man/adjClust.Rd
58012d3169795ee067fb4a7646229653 *man/chac.Rd
1294bb778aa771cb8b0432d7ed4aef66 *man/figures/README-adjClust-1.png
04bd23cf641802638345dc446a6a6e26 *man/figures/README-hicClust-1.png
78c5bed267de9150c565d3ce646dd199 *man/figures/README-hicClust-2.png
c57bef1c9b71dbf4e663700dcaefa04a *man/figures/README-hicClust-3.png
602fcdeaf0cd4ab7a7831f2c94bc27c4 *man/figures/README-snpClust-1.png
bce474778e883e0f0d7fce82d3f3340b *man/figures/README-snpClust-2.png
d00a1aff461ee15feafdbaa07613ab30 *man/figures/README-snpClust-3.png
3ed8e614783e5901a9881615936d3d0b *man/hicClust.Rd
90a7e334a037450b0a9b2f046a0c717c *man/plotSim.Rd
356f70075db3e874f30c8ad58f270d07 *man/select.Rd
6fcb32929007b8720337975ff0045f83 *man/snpClust.Rd
43538fa86d51aa1d2afca3f4a14fc605 *src/Makevars
d2aaa4cab3f43100a67868a8503de171 *src/Makevars.win
c34dc7fde8668f2541d1289a27157b33 *src/RcppExports.cpp
21caadc1a0b95df31285a2fb448554e5 *src/adjClustFast.cpp
6d5fc09b353b9419b5a16dd7bec849ef *src/mainFunctions.c
4543c7812c549c8a643d02ecafc49922 *tests/testthat.R
60ebfae526b756cb16177880c5ec923c *tests/testthat/test_adjclust_equivalentTo_hclust.R
a4c3cf091085dbde0fe8f8d4b7802b49 *tests/testthat/test_adjclust_equivalentTo_rioja.R
9faea766f05c6ab67a0cb426905e69d7 *tests/testthat/test_ascendingCompatibility.R
50890608af7eaa7761a1d9efe54ea345 *tests/testthat/test_correct.R
fa543492bedb98ec315e98b317f285c4 *tests/testthat/test_corrected_plot.R
7f6efa9db99558f1daa722931ced761c *tests/testthat/test_cuttree.R
8c5cc3df79ef094c08e65f1394426cdd *tests/testthat/test_dense_sparse_comparison.R
9b2f0669edd88e5c6b293049591e0648 *tests/testthat/test_final_height.R
47be43fb387eff30329bf9145597fa8c *tests/testthat/test_hicClust.R
4826d53a15ac23626822a9ca4db4711d *tests/testthat/test_modify.R
af1a461d50d77732520627ad05b3670f *tests/testthat/test_plotSim.R
9b66bf636b6e88e9f59ecbcb6e882d6c *tests/testthat/test_similarity_equivalentTo_dissimilarity.R
19bb2bcfee683051ed00931984eb9d8f *tests/testthat/test_snpClust.R
1c6cc62e2f720ee9e4909215fd02fb44 *tests/testthat/test_snpClust_NA-in-LD.R
54de6942a25f58ddaf55fcf0d7a851d3 *tests/testthat/test_warning_with_decreasing_height_plots.R
a053f2db6cc09f6e532cb836ec4b1c07 *vignettes/hicClust.Rmd
cd72aae0d249ee07fb322d21732cafd1 *vignettes/notesCHAC.Rmd
36938884fab89261f065da8ba73df071 *vignettes/snpClust.Rmd
