3305c7b19b514b95bc9ca6fb106f34d5 *DESCRIPTION
c1379a2176f097c1c8a644b9d297fbcd *NAMESPACE
f12a68d21e187b2ef577aaf2f7c8dde7 *NEWS
06c4d702f9c79cda69db513668ec874d *R/BF_Rao_Blackwell.R
404870f1f206e5ccacc99086148eb0f9 *R/BF_auxiliary.R
f8747c405b2e8c8acec04c9d84692a40 *R/BF_likelihoods.R
443247ce1e34466c22a75fe1bb110418 *R/BF_marginalMPT.R
80b9737096751109ee49674a535ef992 *R/CollectionOfInputProcessingFunctions.R
3ae805b9a2827d34c2bfda30c760d46b *R/PPP.R
fdaadc62fb38af438b4015282adc0025 *R/RcppExports.R
e4fdbad8101cbda0c537a707a92395ee *R/T1perGroup.R
7075d3d9ed104a74b3a5b9e478290325 *R/TreeBUGS-package.R
1fae833bd00f37f0dc552e28122f5cc2 *R/arnold2013.R
6ce9e6002a89a7c18efaa601a69efa0d *R/betweenSubjects.R
c9fdee0ade087fb31658ebf3f715b63c *R/callingSampler.R
d0695b50429b04aff96363ee4111b9c7 *R/checkFunctions.R
a8af8a27083930b4bba6b15e08dd01e9 *R/corSamples.R
3e50c94a088629997a40191e1e8af310 *R/correlationBayes.R
b3922b349cae78bb24fcaeadad78ea5e *R/correlationBayesMCMC.R
e567b74107c362b0cd9c8043fb267335 *R/covCorrelationString.R
346cffd4bd1f75e7353660513d868eeb *R/covDataRead.R
13de4c675f54042227fde73113a12f95 *R/covFactor.R
025b0f21335e9c37684b05d20442347e *R/covPredictorHandling.R
278f5d12d4cc615ec982957f610610a4 *R/covariateHandling.R
4791a7603cc3c29e62dc5508060d09ba *R/extendMPT.R
bcd89c25bdc55bf29900b2b27fd4cefe *R/fitBetaMPT.R
51e1ef64c38f9ca0059aaf9a8c7ba6a6 *R/fitBetaMPTcpp.R
aae14baa79d1c3a79cf3518f1a9cc294 *R/fitModel.R
03d8b86c6e5ad153c1f3b1a5e4edadcb *R/fitModelCpp.R
038360480f20a01b94368436f811fe0c *R/fitSimpleMPT.R
a5c4615296a6e16123caed10d3a7b998 *R/fitTraitMPT.R
0090fd4f7e75ae262ec347d886a87e03 *R/genDataBeta.R
b7e7fdc8dd9b7d9f4356c6cff5a8f451 *R/genDataCheck.R
594e5a462f8c5ccf43495ce5b9ad5e51 *R/genDataMPT.R
072447363e09c8aa12ec242a4025d678 *R/genDataTrait.R
c6b9f952fafa323ceee7e9fdbe2073bd *R/getGroupMeans.R
6949f17c38b9de68671a85a1ad49f532 *R/getParam.R
c8efbc40115455e6059c9d7ad151e6ee *R/makeModelDescription.R
3d3646fb068399795abd9370b47d9d02 *R/parseEQN.R
0104afc3766ed147f0cec0a0d7bbacd6 *R/parseRestrictions.R
177d0e4a6f949e916c2526f9bb691e3c *R/plotConvergence.R
97f61dde01c9496e4f64e3d2e2f07f19 *R/plotDistribution.R
c794c9cc59251d5bd6069764850bdf0c *R/plotFit.R
5cfb0d928606baedcea7659324e6ee86 *R/plotFrequencies.R
138ca9ed06a4938ef129ce029552ccaf *R/plotParameters.R
a6032ba29b1f07076da5827faa6aa9f7 *R/plotPrior.R
97e62704355d0f14c62849630398cc96 *R/plotPriorPost.R
cbf387f20259c11cf80be41205915bac *R/posteriorPredictive.R
a11f63159df4e40b21693ea90ee74a42 *R/printMPT.R
e09e0dfcbb4be1d5be3b1e07990eb654 *R/priorPredictive.R
8a95495fefbe1cc83523b63ae16238ab *R/probitInverse.R
43ab878cef6f966fdfa199aded2a1e89 *R/readEQN.R
2e02684f789171c8c08c10dd84ec6cb3 *R/renameBUGSoutput.R
65681d40393bdbeafad2c106cf5009cc *R/sampleHyperprior.R
b2e0a9f4e501b28189946bb1faab7e17 *R/summarizeMCMC.R
8357ba103ffe83676905ea1a5aea2abf *R/summarizeMPT.R
437a53a16f06ec071c86d8fd69e55e30 *R/testHetChi.R
841b475ec9ed40dff8a9dce02703752b *R/testHetPerm.R
6316d30d5b102da353919b6b3f8c5d8f *R/thetaHandling.R
e1bd196f530c9eb540062a4312a3b6db *R/transformedParModelfile.R
7edceeed555e769f38f72a05670ba25b *R/transformedParPosthoc.R
9c2412bf827834640f538071ad44e7e6 *R/within_subject_EQN.R
502d78165c5bd5eb54af1a5bfdaf7cc3 *R/writeSummaryToFile.R
c418afac55d1fda9b0744812b8f4a7f8 *build/vignette.rds
71355a4f936ee6d3f69e673fa73d4237 *data/arnold2013.RData
598210b17a9771fce655dd2519326b55 *inst/CITATION
05e74db71d7fafbaacb957b1daa34dba *inst/MPTmodels/2htm.eqn
d9a6bed11ce4e4545fd0001882d8b950 *inst/MPTmodels/2htsm.eqn
c68dc54b1cbda575c4d8288f1bcabca8 *inst/MPTmodels/winbugs_zero_trick.jags
797103cbbda897f9525caffeb124cb90 *inst/doc/TreeBUGS_1_intro.R
de87a4956855961f3621624905f51519 *inst/doc/TreeBUGS_1_intro.Rmd
368937877c099c8de92b8d175d28ae74 *inst/doc/TreeBUGS_1_intro.html
c6f53635c6e3eb23c9980e5a0343a234 *inst/doc/TreeBUGS_2_extended.R
e39f1a4c9d9c25ce90f483f2253b50a5 *inst/doc/TreeBUGS_2_extended.Rmd
6536bcfa4dacb23fda73331e4c141487 *inst/doc/TreeBUGS_2_extended.html
d56600053555a75b49b8543ee96a3b5a *man/BayesFactorMPT.Rd
fe289703b221165eb6f5fcc1bd89c695 *man/PPP.Rd
a1911798fa872884d8033ac931a690f7 *man/TreeBUGS-package.Rd
e501f063e273210aef3780075699c3c1 *man/arnold2013.Rd
166ac4f27b3ee13ab8f25719365bba45 *man/betaMPT.Rd
48f502ac2957f75e2aa7c964e9bdd549 *man/betaMPTcpp.Rd
22fb8c5d3eb20c5329d2f527da47534d *man/betweenSubjectMPT.Rd
4d13191e26c51d2c1b42d2cb54de7021 *man/correlationPosterior.Rd
88a5231a3b1d6a4a4467dc340312952b *man/extendMPT.Rd
9df7a907504b0c2f310063ba8f810b8f *man/genBetaMPT.Rd
2af49dadf62f05b668d15b938e2785f5 *man/genMPT.Rd
2f9aa5f07be4e2d6a330436764fd1237 *man/genTraitMPT.Rd
56bc1dcc32e88eaa1f042d140b9fea4c *man/getGroupMeans.Rd
23caa6e03c23fda89cc0de0bfdf8515e *man/getParam.Rd
79406e15327860a4dc0d68ecd40cacb4 *man/marginalMPT.Rd
7fc34e1598ea339c32a08a745bfe375e *man/plot.Rd
2f14622328cd03bb2e6d8b776142f21f *man/plotDistribution.Rd
63c8b4bdebfbbb8dabc510cb1022be82 *man/plotFit.Rd
6da2d87cd7b118acdb78d2f4b61285b5 *man/plotFreq.Rd
1be7ee213b22638aaf3dfa938387990c *man/plotParam.Rd
6474cf3ee20b6a511895ed1da1896019 *man/plotPrior.Rd
3ad7d2cd89c9ba1c91f05db33758e33c *man/plotPriorPost.Rd
4be192fd14fb6c424d6a84a89c4eb992 *man/posteriorPredictive.Rd
33afaad1fd413d77fc7bdbf715d0cd1f *man/priorPredictive.Rd
da3f6bc411873ed15f4082aa5df2832c *man/probitInverse.Rd
d58e1f661dad70e6b52b41096715b4d0 *man/readEQN.Rd
746516c5b911f120cabfae5dfd17ee40 *man/simpleMPT.Rd
f734a09ea2faadb5ca7a73885eb5838c *man/summarizeMCMC.Rd
fc1fe2c1e8afe9a84ad5156e51773399 *man/summarizeMPT.Rd
cf90d63c3a0d317b292c0a877d276e6e *man/testHetChi.Rd
19227d2da03f42b67a33811fd8a986b1 *man/testHetPerm.Rd
902c7c412fd4ad3e725c8720e871d0dc *man/traitMPT.Rd
bbc5d9b86617d49485202dfac2f00bba *man/transformedParameters.Rd
0db112257d11633cfa3392622606780c *man/withinSubjectEQN.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
a2b199c76f7506ba6f711de5494bb286 *src/RcppExports.cpp
37711264952b645e74638fa67dbe13ce *src/betaMPT.cpp
9c0c5081fc5dee2758cebccb43ad9ce7 *src/init.c
a34ce7c6b1a02949b611b62fceeca759 *src/loglikMPT.cpp
3cd4ae2b745a244c81a09946f6d340fe *tests/testthat.R
03d4607c59a68726271ebfe1905b5dbb *tests/testthat/test_genMPT.R
e30f460b6ca9ba84b1e47013b34ca259 *tests/testthat/test_readEQN.R
de87a4956855961f3621624905f51519 *vignettes/TreeBUGS_1_intro.Rmd
e39f1a4c9d9c25ce90f483f2253b50a5 *vignettes/TreeBUGS_2_extended.Rmd
