ce6386ffb25898323462e04e10a28956 *DESCRIPTION
176998c38a10cc9e966e83aa8148d320 *NAMESPACE
4579bf04e2d37416e9c375e8b17da189 *R/MinSqTree.R
dbb0e021eacb82f0eb81626c36b08b5f *R/ScoringMatrix.R
f310c2dc3efaa8fc4e5a3333300afd96 *R/TKF91.R
2a6bc409b6977a06c6d30aaadb3f33b2 *R/TKF92.R
44cfb76dcac92ff7f293c33c1092145e *R/TKF92HG.R
26e1520e0c11b2fbfac225923e299694 *data/GONNET.rda
7b35583b8c86a951f0a948387a59882e *data/GONNETBF.rda
13b4ea908bf3ed0d799d3e19b9c9af07 *inst/TestData/pair1.fasta
a340572ff44ae31a48ba84663edb6ff4 *inst/TestData/pair2.fasta
f3f5f9f6665e64f52684cdc2ff4101ae *inst/TestData/testSeqs.fasta
984877972cf12ad55bed68e8593dc06a *inst/buildMatrix/buildGonnet.R
10ac0097a2b0b978f719109493059ccf *inst/extdata/daymatrix.txt
87de06f8cc6485427752472387a78fd6 *inst/extdata/pair.fasta
13b4ea908bf3ed0d799d3e19b9c9af07 *inst/extdata/pair1.fasta
f3f5f9f6665e64f52684cdc2ff4101ae *inst/extdata/testSeqs.fasta
47da6803ca48da641e198088366580f2 *inst/extdata/testSet.fasta
a6cd424b484a3ea386c9ad19aa9b4dba *inst/makePackage/TKF.txt
01035d18212d82ea501e9e7e9a72bd4e *inst/oldScripts/TKF.r
a88451d9fcc05b8f818b649e72bcce3a *inst/oldScripts/dynprog_TKF91.c
64a383772b09fdd0368fc6547d663247 *inst/oldScripts/dynprog_TKF92.c
fba9ca1d7a78c8ed990cbdd502546b09 *inst/unitTests/test_TKF91.R
b0097451a6d15ba71e8a9e4c6513d1b8 *inst/unitTests/test_TKF92.R
51af4414756236b26ae75f8f2c8fc224 *inst/unitTests/test_TKF92HG.R
588e6fea2a6c5515abacba7072210b22 *man/AAToInt.Rd
23b3dc7128b1ae236826ab0ab88f8c2c *man/GONNET.Rd
b0c13a11c562c8d7d8ebfd98a207318f *man/PAMn.Rd
d9fb9a9122910a880d45803e373a69d1 *man/TKF91.Rd
4451fb402392e200a74d20282b131055 *man/TKF92.Rd
b9072eea0bdbd1eb099128041cfdf496 *man/TKF92HG.Rd
fbef98e854031139b2f3d6f394beb158 *man/optim.phylo.wls.Rd
768db9de175ce840d23227a399a106af *src/Makevars
ebb46f8b1bae6de018e88b656d112392 *src/Makevars.win
d78d050e1f86ff2c4c7748cdffb5769e *src/MathFunctions.c
6cf8a941f11fcc9d7963e3b78ca138a4 *src/MathFunctions.h
f9c74e6f0e6acb4c49b364f17602f4ee *src/R_init_TKF.c
9b76144ebfe3e5ab166140c26a40f4bd *src/TKF91.c
f87d75a54c3d3e15779295f508fd3a18 *src/TKF91.h
c4ef41cf4460950d841c7d702849778a *src/TKF92.c
b01149f9ed25980ba9f9b1c57a82d1e5 *src/TKF92.h
721e506ac86520f40af033746451a87f *src/TKF92HG.c
79e32725de513a7a989db7f9485061ba *src/TKF92HG.h
6908a47f3b663a9d4eae7585f823dc4f *src/matrix.c
f8cba0221b74e2034c824c874762e9c9 *src/matrix.h
726f3c97a2b296754ae7c621b551461c *tests/runTests.R
