ca755b4f48f4b8ff7370631c5ebac6a7 *DESCRIPTION
9a3111cc61c4f08388f7f769d5c848ae *NAMESPACE
baf526d4931b8df970fcebbf9c0734d8 *R/EXhaps.R
e5cfde108deb1aff6b9827ddf6be17d9 *R/EXmuts.R
dbcfa668b21e75ad3a109908e75441cc *R/SNVdata_methods.R
4dc4ad8f20db7a4d64c44370f0c0a467 *R/SlimFunctions.R
0f8e0b8e89d31523c794a1e9308bb221 *R/check_functions.R
487a7e06fcb1ae15df77f31aeec8fce8 *R/choose_gameteFunctions.R
290c49141f6cfa03d17c4c9bfa61541f *R/combine_exons.R
248bb6e70a246c337ed8da12d323b26c *R/hg_apopPath.R
a967ac711c3ed4161c17a7da990d62e9 *R/hg_exons.R
f79dcb53e8babdeafbad3dd1dadf4acf *R/identifyPathwaySNVs.R
f0d91251d365b3022d3c0a65fab9e1d1 *R/marker_map_functions.R
e6302979349db47edf9c984d85df55d7 *R/sim_StudySeqFunctions.R
20668ef6f294ff0b67d172776f3c8a8a *R/sim_gameteFunctions.R
1c35d375504c37a7a0db6d7220e5d571 *R/sim_seqFunctions.R
c88161806d6890c0ce8f3bc2c2ee6c28 *R/study_peds.R
5cd65182b2fed440958b4304a0125965 *R/study_seq_methods.R
dc7f63bcce287089712ac0534fe3dd99 *R/utility_Functions.R
135a02e172d75911fa3f2f8e31a82eee *R/vcf_functions.R
c7fa2efa519dc21adc0f811b1a8d6765 *README.md
edd87fb3d77d80cc1ab158769f1e9392 *build/vignette.rds
cfbdb39271704753bb3e3d9694ecfd73 *data/EXhaps.rdata
9b64e88002ead1722c9b6e4c9ba65ed0 *data/EXmuts.rdata
e85f48b243939270f4df91182543f956 *data/datalist
b1c0aa065a723d190e3432fcb1ffbe0e *data/hg_apopPath.rdata
09699a0440fb70eeb439e9e0e416b96b *data/hg_exons.rdata
a912c1c7e88cede8ae21a0526176cf2c *data/study_peds.rdata
fe109acba3ebc981c9553b78f3ec150e *inst/doc/SimRVSequences.R
9b6441cb2f90b77a3a384abc3c2bc31f *inst/doc/SimRVSequences.Rmd
5056635d9e66a1b809a136e7779a3d19 *inst/doc/SimRVSequences.html
3f5f95d035fa2c631076a945de5c9e18 *man/EXhaps.Rd
839b61f199ab661fb1465a349eb0e535 *man/EXmuts.Rd
fb7b4ad5428146ae2f364ec5ef1ea0f5 *man/SNVdata.Rd
94bd7f159f815cbdd02fab7c7c550321 *man/affected_allele_count.Rd
eba72525d6de4e21bbe9a0f897951c9b *man/affected_onlyPed.Rd
2f750b9f87881f58e04eadc82fb6a90b *man/assign_gen.Rd
a6304b3143c2ce7ec5a1e64070096390 *man/check_SNV_map.Rd
4f5a313bd82bee20f5cd2ce0e7501fd7 *man/check_ped.Rd
dcc91ea4a8c68c8a10c176c93c834118 *man/check_peds.Rd
997c3a5322dc675383d338c2d891abba *man/combine_exons.Rd
adc830150695cf981fe7ec769ebb301c *man/combine_exons_by_chrom.Rd
a343a6f98f5c473ef06d0878af06b732 *man/combine_identicalmutations.Rd
32e1285b817f7b2eb3ab137e86e2503e *man/condition_haplos_no_cSNV.Rd
0d4f9085fbc1300e0d8fc14b082ac1ba *man/convert_BP_to_cM.Rd
83c6d85157effb7c691db84c88becec2 *man/convert_CM_to_BP.Rd
3ebab2debdf4e8720b01479cc107502d *man/create_chrom_map.Rd
a48828615cbbef87e2cfc60e4ebaff1c *man/create_slimMap.Rd
592c0b92daf3e41bdf1e7308e7bf112a *man/extract_tempIDs.Rd
8925da510c76557676d97f8b8394a537 *man/famStudy.Rd
ebdaa1593ddc7fbe5b62616b3436f5c6 *man/find_no_cSNV_rows.Rd
ecada058745ae23a1a7f2ad4b38f9f26 *man/genos2sparseMatrix.Rd
9d3a72cf07ef6af81137f774bb757a5a *man/get_SMindex_by_person.Rd
59e68f137273568a9060e07d42b929ce *man/get_parOffInfo.Rd
cdac3ed51861281f70dedb9d31db080f *man/hg_apopPath.Rd
823b8e23dac227fb91e3ac0c868038d8 *man/hg_exons.Rd
67e6b83bbb939147d49c04384eab81ee *man/identify_pathwayRVs_byChrom.Rd
1a59fc6c0a2e743de21faa2d5fc0bd08 *man/identify_pathwaySNVs.Rd
a6ec4445720c74cf374d58cc8416ac5f *man/is.SNVdata.Rd
fcf144e3626f1e2d3630b563efdac9a5 *man/is.famStudy.Rd
012f0952b0cd2e6b6d2b6031d7c07cd6 *man/is_int.Rd
ac889177745ce05340fb22970b90de98 *man/is_odd.Rd
284bb6a22a2e5d6619c0fce2a95dfc5a *man/load_1KG.Rd
459f157b8f5d6471f0e095cbdf64f845 *man/reMap_mutations.Rd
b87c45fb562aa2bbe2d0d510878b5223 *man/read_slim.Rd
cf3ac500d14bce56305348a50a951d7d *man/reconstruct_fromHaplotype.Rd
aaf385d91e047f2798f8efb5957ea5b9 *man/reduce_to_events.Rd
1105a32fa714354c54849808e87d4042 *man/remove_allWild.Rd
2c19576383637bf443ed2caa85bbfa8f *man/resample.Rd
c5d8c15d89c9309ad39766839760974b *man/sim_FGenos.Rd
8276ec4233d710c26aec8309e9b92342 *man/sim_RVstudy.Rd
c100e670a44b9466b8c2e345eb032eea *man/sim_chiasmataPositions.Rd
837f1b37b59b8eceb3d47cddebf41774 *man/sim_gameteFormation.Rd
59a8a7100fa1633dd7cd1fa2b43c4263 *man/sim_gameteInheritance.Rd
dc594ce26d9a5b62066d4b6262b78baf *man/sim_haploidFormation.Rd
2c18944a7c5a6a032e0704510887b2da *man/sim_seq.Rd
5745cfc06274ece455ad874e326f8b33 *man/study_peds.Rd
5228f30fd57ae2d320c7ebfa9d9d9e7d *man/summary.famStudy.Rd
58b54f2053b26ebdf8ed1c649c44055a *tests/testthat.R
6373704a87cac766e312f48adbe83cce *tests/testthat/test_affected_onlyPed.R
ba6f221949af09bcc0854ee2774baade *tests/testthat/test_assign_gen.R
7eb94607183d4dc26e83f06102f68140 *tests/testthat/test_combine_identicalmutations.R
7ed6835186715469d058cb85b94791c6 *tests/testthat/test_create_chrom_map.R
ac32df56f47f69b1690f0a565206cd56 *tests/testthat/test_ger_parOffInfo.R
0b899196d84514d68e751180a3a20b01 *tests/testthat/test_reMap_mutations.R
46ef806974de471e0ed268004cf3807d *tests/testthat/test_reconstruct_fromHaplotype.R
d7d922557a29b562fdef1eda85f4fff8 *tests/testthat/test_reduce_to_events.R
d83db3faafc7ee1adb670a2984062921 *tests/testthat/test_remove_allWild.R
f1567cab22261a44327f626d76dffc13 *tests/testthat/test_sim_RVstudy.R
e7cd933cb4c6e4542e430debc01afd07 *tests/testthat/test_sim_chiasmataPositions.R
2bd2992e905ae49c0184b2441e03fa2a *tests/testthat/test_sim_gameteFormation.R
bf0e3a2aae85fa26f259c6aebaccdc5a *tests/testthat/test_sim_gameteInheritance.R
a335e6d5e7b31cd1373203a9380127cb *tests/testthat/test_sim_haploidFormation.R
9b6441cb2f90b77a3a384abc3c2bc31f *vignettes/SimRVSequences.Rmd
43e289a47e4949b67cf21498af9e3b25 *vignettes/TimingPlot.png
49a3e1a261148347f7824975af965d86 *vignettes/examplePed.png
421eaee808ab4e698cb393786ea95d3f *vignettes/flowchart.png
642c332573902b83e280f7f3ab3f7b3b *vignettes/singlechromgametes.png
