6b10ffe809209e98845aea686e35201a *DESCRIPTION
4742a8725745f7069e20312f331afdb5 *NAMESPACE
a2d35a09c4d690a469cef28c24b44f86 *R/Bonferroni.sig.R
7da84dd8215f19d88374fcd87abe2e5a *R/GenomicControl.R
c5e9ca529b67a4e7a3d1fbfedc1dbb6e *R/GenotypeRate.R
d3950c753da22ad2c18e911e7266cc6a *R/LD.R
14385daf86294cc0b479226afc1e7c0a *R/SNPHWE.R
60abe71d498f174c5614a25220e91393 *R/Table.N.Per.R
a0d129430f3649f45c99af99107bd5b8 *R/Table.mean.se.R
53a5709c5e05734d3cf3244bcbe1407a *R/WGassociation.R
ce27e682dc6c18aaec27f9b306b19c6b *R/WGstats.R
e165b3b2957493e9d227184890d967df *R/additive.R
36900b7804e079b4dd0d20cdaf1e9e47 *R/additive.WGassociation.R
119b885ac445abef8cf8f4002ea77025 *R/additive.default.R
6095dccbbde88cde83f793a84505d62e *R/additive.snp.R
e722942249b43178aca7be2ca3351df1 *R/as.snp.R
5ba63f48848319179ae1aa57ceb001a5 *R/assoc.R
3954d8d579f6eccda9d06aed87b9c151 *R/association.R
1f4ec45958d5c925db4b4c2d1a5e4656 *R/association.fit.R
64d1f19a0b1e9744e16e72a57aa0daa6 *R/c.WGassociation.r
70bf3c2ce05f00d566e182205d1d7e7b *R/codominant.R
1a9e3982427ae10d8da7df7bec9ee460 *R/codominant.WGassociation.R
052e12b3be72d3fe4e739988c3dd5483 *R/codominant.default.R
e80b4d0b62fdd6a8e505d5e8eb43961f *R/codominant.snp.R
614a9df5b896767140bfe2643c791099 *R/crea.lab.R
89bf63f29b28192ce3fa977730e18e4f *R/dominant.R
be9ce2a099f0883791f4d79c2c1da991 *R/dominant.WGassociation.R
50bc3b3862e9d5fef0a7ac105e363427 *R/dominant.default.R
632ab799ca1a1fabcd1878dd3d142cce *R/dominant.snp.R
41403a10d56bc371c8876c77f1233d01 *R/dscore.R
d0beacbc95c6d4ea0ae01e1c77faf69f *R/dscore.default.R
765b5697cc80465cba2304e7f7c16067 *R/dscore.setupSNP.R
6cd2f14d148d8bc18b1b6f7dfcf6e88d *R/expandsetupSNP.R
5c0f1ee0edf67248e10da5b47e52e9a0 *R/extractPval.R
d01b61c176611aba3ae7da559ce1595f *R/extractPval.i.R
7e5e473d19e5066c37f2d01678af4819 *R/getSignificantSNPs.R
1291eda9543cb2e62b66a784aa9d5689 *R/haplo.inter.fit.R
5d987ab2e0cdf5ffa9fcb4f954dc0d67 *R/haplo.interaction.R
af7f3b61cac7677b8aafd4b06b385630 *R/int.R
7f639cc4cc3a61901a02a612477b5c7e *R/interactionPval.R
d5eddd4b9a42521d85732c35e4739df0 *R/interleave.R
70d0e1c984f678111c300c49543b4edd *R/intervals.R
ac5aefee0a50de2de3ceb526ff5afc37 *R/intervals.dif.R
fdf7b307b4385f64662a90c980556785 *R/intervals.haplo.glm.R
b47307936669c5d713ac2785311a6acb *R/intervals.or.R
9ce68d0baa565b07e006ff2ba14ad6e6 *R/is.Monomorphic.R
1c2d706d021f83fdde9c9a331bf66e71 *R/is.quantitative.R
0353459068b3f806f163d762a987feb2 *R/is.snp.R
4017921314bc22752ac809d76909ba6e *R/labels.WGassociation.R
b43f6f599ce5fe3f9bb64e8ea87a0228 *R/labels.setupSNP.R
c154189fe485420b7195ab4c2c79da7d *R/make.geno.R
d897a766c470ce46796e6995f2988e3e *R/maxstat.R
bcc6e4d2d3755d8aae43c54625d63553 *R/maxstat.default.R
5fd003fdc30fca5c0469c64ff9e72ca6 *R/maxstat.matrix.R
dbcc69f090f97427e667fa44c4c6a37d *R/maxstat.setupSNP.R
a131fceebb680f3bb8b2cd7ec0d5a75f *R/maxstat.table.R
b8210dedf19a1ce120aca26d20bb40bb *R/modelTest.R
f86f8fbb79309530fd9d89433bc82d94 *R/odds.r
d1f8da481659b4412151fdb9a38d5459 *R/orderChromosome.R
a9c0afe94aa3b3adcef2b2b612b51fef *R/overdominant.R
a29b408ca8b27aa1a02e9fe3f6494a68 *R/overdominant.WGassociation.R
ef40a0bd773405f037c1d680572a9b3e *R/overdominant.default.R
45f30d8b6d1d0c66d4c0bf39bb5d824f *R/overdominant.snp.R
0a5e141c45a5c07c18f5ab2d4faa174d *R/permTest.R
faba9ef5ad3eacfbb76dcb290aa53bdd *R/plot.SNPinteraction.R
7dff83bea353c5ea967348255be21e04 *R/plot.WGassociation.R
7f3acfcba9d1697e01f5b2bab38d2937 *R/plot.permTest.R
eea7dd20e8ea77197528a7dfe36387a2 *R/plot.setupSNP.R
65129e512eedae74b55f472594a37e0c *R/plot.snp.R
2e84dd617968602b9acb9bc5c3924d31 *R/plotMissing.R
2743bec7a11777cda0898615e68de40a *R/print.LD.R
4bf9ebdb297aaf25dbdd0325a6ffccd1 *R/print.SNPinteraction.R
c11a06c391f0ae6493a26bfd9f62618d *R/print.WGassociation.R
186d719a7d4782082c83c93c2470dbd1 *R/print.haploOut.R
ac429ec0d222934829fa3d26cf1b6700 *R/print.intervals.R
49a523e88c5605183607e401d3aa9c68 *R/print.maxstat.R
2c23d8fe04470c190af840dea9105cc4 *R/print.permTest.R
c6cdfe2268dfcbae78cb9499cc82395f *R/print.snp.r
72488018b7f7da473a53bd54d14314ef *R/print.snpOut.R
3ec3382d17e8093292d12109e2154132 *R/print.summary.snp.R
f36bd072eee9657be6b961c45f760da1 *R/print.tableHWE.R
70d65ff14b1f6e76361aaf9286860be7 *R/pvalTest.R
e386ae65298a3f9358570247d661a697 *R/pvalues.R
8903280fe58e3cab14866d319cd5e2d8 *R/pvalues.WGassociation.R
a8d7bc6523e5f26229439ff9c20a636e *R/qqpval.r
ee0c3ca964f3dda6eaa51796af048c58 *R/recessive.R
5db65ac496678e33942f1024c5caa5c4 *R/recessive.WGassociation.R
29d5bd75f7fa08e5bcd71318bb8d091f *R/recessive.default.R
052b6d27c354724498d189a05089f935 *R/recessive.snp.R
644a7973ef3bbca562333fc8b9a38756 *R/reorder.snp.R
ec98758a691fc96827bbde51798aecec *R/scanWGassociation.R
5e06f076e0b12f297e5ef086e6f0594a *R/setupSNP.R
d645cc70fffa3bbf8c4deaff438e4406 *R/snp.R
b12e3368c07d024e62f6d58e57ccada1 *R/sortSNPs.R
54306813b9033bd7aee35272576f1ec2 *R/summary.WGassociation.R
100e1d856ccc1c213d5dd27f285317d4 *R/summary.haplo.glm.R
27afaa77ea03d568a51d08b253d0038c *R/summary.setupSNP.R
7d641b3e4f4752275adb48d0d0bc8b2b *R/summary.snp.R
73e82c61272523637ca0b1f117f8789c *R/table.corner.R
8c54934c688c3fd71ce893585cd4e3c6 *R/table.interaction.R
1d85f74394a6722c4264065d0189249a *R/tableHWE.R
a77823953004e9f6461f470ca8661847 *R/togeno.R
dd19f71968800f0480eade0a63b4ac05 *R/trim.R
233ed01a8361f86577e201f5a22a0783 *R/z$.setupSNP.R
8dda166f13a4a9d5808ab155fa258223 *R/z[.WGassociation.R
41ee9ea93b070928983bb25129ef822d *R/z[.setupSNP.R
26df01f0f031dea632f2ced65dbafeca *R/z[.snp.r
68c4cb1297dd0a69e9130e642d1f30ca *R/z[[_-.setupSNP.R
6bd68bb31cc27d4446d077779c1538bc *R/z[_-.setupSNP.R
e84f6d06e7dfc27c911a40f96919fd49 *data/HapMap.rda
141e16c41f1c2ec9c86d3dadbc3c8fe4 *data/SNPs.rda
b159fe5ff16f4f537eb243865e70078d *inst/docs/changelog.txt
3cbdfdf22798163a0ecc0423c4e3986d *inst/docs/todo.txt
720bf3a2d0e711f09fb8758f2437d5b4 *man/BonferroniSig.Rd
121393cbd9ae4c58995dada7e29a63ba *man/GenomicControl.Rd
1187600896e8d522cd76c7c0b05950f4 *man/HapMap.Rd
1296a873b465e7791f6cae53b96a39b7 *man/LD.Rd
925fd1cafc18a57fee56dcd47af231b2 *man/SNPassoc-internal.Rd
6be69e13549d914c906c360c9dc74c92 *man/SNPs.Rd
f3bbf65efcbc476ac1b89104cfd8dab4 *man/TableNPer.Rd
e3fb1a1c18ca7381b14cf0dc451a7045 *man/Tablemeanse.Rd
7485a2249bdec922552621f2082c7416 *man/WGassociation.Rd
1b94726defeea004adc2ac652ddea04e *man/association.Rd
f5ae8df8cfebd27cc9708e99c59ea8f4 *man/getSignificantSNPs.Rd
c839cb0e0898d4ee7284a1d47454e5e9 *man/haplointeraction.Rd
08f0f57b5505e8daa503efc392085bdd *man/inheritance.Rd
d89e981e0994bf35011628a00768bd18 *man/int.Rd
b859fe1fb9cf9dba7450e909690992df *man/interactionPval.Rd
cfed329a9123415622017f4822816d16 *man/intervals.Rd
dd8181c9dc0a6ed8309ee95fa1fc7955 *man/isMonomorphic.Rd
42e278d0f84478c7f22eae323f3a227c *man/makegeno.Rd
d340b7a3d68977ccc6ebf9004415b211 *man/maxstat.Rd
c32f02302dcef645f9e311b361705021 *man/odds.Rd
93f72af2b6733a7b9e9327dbf33c88de *man/permTest.Rd
e311ae4ec7cd2882f758a9d34266de07 *man/plotMissing.Rd
7895ba69ceef09d8e7d7a68c9e623e54 *man/plotWGassociation.Rd
0df7687ab4e74c8bbaa3df78c8c78cd2 *man/qqpval.Rd
b90d789ef7f5cd7d52dbf4e703abfe02 *man/scanWGassociation.Rd
73bb8149ea0fbd85904aa00ea64412a0 *man/setupSNP.Rd
405f01555aec781f3b8f5b3f2153958b *man/snp.Rd
2bb0c74deafa2a63cfe5057cdb78945a *man/sortSNPs.Rd
0fae2a638d9ab82d77be3e9fca7c4ed9 *man/tableHWE.Rd
