fcd74ecb64d7315f62251f1662b1e35a *DESCRIPTION
8231439817631531a711c97ecbfd68cf *NAMESPACE
3dda642425aed20cf0be0d9e606718de *NEWS
2b42ba9433f145727139a0a8fdae3c09 *R/main.r
63f2327757b8355022db5063c90609d6 *data/hapmap.geno.RData
61d11af6c4c238a02f17bd030dbb6d4d *inst/doc/SNPRelateTutorial.Rnw
1e2b20fca4165307ceab58907f042ebe *inst/doc/SNPRelateTutorial.pdf
0e5f5788c3dbef9a1ad98f70507d18e2 *inst/extdata/hapmap.geno.gds
3dfba33557d832612dcc0e64d942e089 *inst/extdata/plinkhapmap.bed
eb7e83a868607c6a2a7b9d23cc3ea946 *inst/extdata/plinkhapmap.bim
801414c43179a676234d6f4e8a7ba361 *inst/extdata/plinkhapmap.fam
00213792673cddfaf7ac9606dc226f14 *inst/extdata/sequence.vcf
98cd3bce4cf20fef2a59fd880233e94e *inst/unitTests/runTests.R
5939372190a8acf5e377edca729b6fc4 *inst/unitTests/runit.IBS.r
f0e4d0f322ce8686aa92e33b4c9fad5d *inst/unitTests/runit.PCA.r
253f15788e6817ebc4fcc11638cc2fad *inst/unitTests/runit.PLINK.r
361bb9248ae790dc7c25b3e50678988f *inst/unitTests/valid/Validate.IBS.RData
e9d6c067c0d637933aa7f3ab3bd31fd7 *inst/unitTests/valid/Validate.MoM.RData
3f7d403802db8ccabc2c486a65582862 *inst/unitTests/valid/Validate.PCA.RData
00c04504ac9c2aaa2054e00f27872996 *man/SNPRelate-package.Rd
07fd040e20a00529021198708beb11e3 *man/hapmap.geno.Rd
e9012907d54c71c28f956d9dd9e977c5 *man/snpgdsBED2GDS.Rd
2216e75d16369cd60ee1935e1b460346 *man/snpgdsCombineGeno.Rd
8d9faba50a54efba9ed40c3180133fe6 *man/snpgdsCreateGeno.Rd
7a5e8eea368d9fb967d413d6a595efa6 *man/snpgdsCreateGenoSet.Rd
78e522c39b5f5821437f3f497722107b *man/snpgdsErrMsg.Rd
8fa681060959c5c86606ddf0ac3d3a00 *man/snpgdsExampleFileName.Rd
5b89a4c01dd192b1c27f64ca6cd92496 *man/snpgdsGDS2BED.Rd
d3d01a6527d536f363c9edb6f3dabfee *man/snpgdsGDS2Eigen.Rd
cca20e2280c0cca076ee06178d669ee0 *man/snpgdsGDS2PED.Rd
cff762e955535291e616971eff01f859 *man/snpgdsGetGeno.Rd
db7e50962da086c6e392d8704376dd5e *man/snpgdsIBDMLE.Rd
fb12c6068aa51231650b3a0069c1ad27 *man/snpgdsIBDMLELogLik.Rd
76b6239aa8baf08a815a43a4d7e12561 *man/snpgdsIBDMoM.Rd
49b98eece002a79dca62ddf4e4a9badf *man/snpgdsIBDSelection.Rd
98a1bb0838fb5d3186a3c624ef139255 *man/snpgdsIBS.Rd
3eb2e8dbdf85478cbf932d2ebf59a69f *man/snpgdsIBSNum.Rd
245740c1694b84f0326b3e6e16d9c40f *man/snpgdsIndInb.Rd
455e0aa34b98539f38265980979ecbb3 *man/snpgdsIndInbCoef.Rd
bda280dbf151b19adcbdea98e7cfee47 *man/snpgdsLDMat.Rd
0f22c235f71222cf3619f3b06ba39f7b *man/snpgdsLDpair.Rd
743f404893f05e71ebb5472ae9e00c22 *man/snpgdsLDpruning.Rd
d1a95749257175f900f2173db006ec8f *man/snpgdsPCA.Rd
59e63317eb8f8a5bf2cfd0ed0b2b49bb *man/snpgdsPCACorr.Rd
3dc0bbfb358b53c9d6085a0c02748c0a *man/snpgdsPCASNPLoading.Rd
458ef10fb2f8ccb326e0a71a2eccdb6e *man/snpgdsPCASampLoading.Rd
e7e877b9f849d256b702e83719054b24 *man/snpgdsPairIBD.Rd
5098871304f465615db6aa6d351d8013 *man/snpgdsPairIBDMLELogLik.Rd
1788fc450675fd7569633d22097cd1f8 *man/snpgdsSNPList.Rd
23c3c499840189a458819dbbf744d13d *man/snpgdsSNPListClass.Rd
7c959ebb9c3367089907df2d0f49c80a *man/snpgdsSNPListIntersect.Rd
3836a83393c333baac0d252720053a7f *man/snpgdsSNPListStrand.Rd
508dae3b128ddb469c85ec90377326ec *man/snpgdsSNPRateFreq.Rd
2c089c36e3645d509f790c39bdd0fb26 *man/snpgdsSampMissrate.Rd
6276080aa9146a99060ae3a6e650fbf7 *man/snpgdsSelectSNP.Rd
89ec8f6946aefed443b45a8b71226354 *man/snpgdsSummary.Rd
d0207e33654b0eef338dac2b328f9f64 *man/snpgdsVCF2GDS.Rd
8de7b624e94d7b413ddc809e0ac391de *src/CoreDEF.h
1257cfd949e422790c0fa7e5dc02e00f *src/CoreGDSLink.cpp
16f037276fc1043f6adf33f4bd77e47a *src/CoreGDSLink.h
869c3c72b7e4e3f97c32167521a4299b *src/Makevars
bdfd9797524ab6027a1bcf06d34a9057 *src/Makevars.win
648696c8437d13c0de6d4898cd27ed93 *src/dGWASMath.h
d25acbd9a4672ebd6c0c1c5e92478d68 *src/dGenGWAS.cpp
0fbf8bae817cabf1a70b743451174cec *src/dGenGWAS.h
e573616b633121052db281cd82e7e408 *src/dType.h
00555b75bf79e00e5200e6747abbb372 *src/dVect.cpp
ac31f81e67031d59f3108509e4057c18 *src/dVect.h
ec8e21c2003dd1c5c67445bb991a96df *src/genIBD.cpp
05ec94fa82bedfec7d7857fe9ad3a452 *src/genIBS.cpp
6b421d22b611e35f9bd77e5a73ff0f09 *src/genLD.cpp
9b2961842712a55635f489534684b62c *src/genPCA.cpp
e235be0eaa7075afcf4a8633d3bb581e *src/main.cpp
0c943fe706b137aff8051017e204af7b *tests/runTests.R
d09d6bb49f8d52c65e39ba5d4eb6a1dc *vignettes/SNPRelateTutorial-IBDMLE.png
61d11af6c4c238a02f17bd030dbb6d4d *vignettes/SNPRelateTutorial.Rnw
2e46d7b0cdea051f4e0c287a541b01cc *vignettes/flowchart.png
