76bb9df87bc51f43a2e90870be6b0c6d *DESCRIPTION
86d1ff8b7633c437f24bd5810e680549 *NAMESPACE
0093ad15a497aae687b927199ac8ad74 *NEWS
b6498063a4f64b536549f4f0eb6f99ed *R/IBD.r
72c12e99b861e6ba4f352b78c6b7c9ef *R/IBS.r
3a60690d16fd207a4c814b9b725edbe5 *R/LD.r
ab896f445aef3629148c3aa49315d0ba *R/PCA.r
477e2514348d420888375c5036956df3 *R/SNPRelate_Main.r
7b13a50d91c1c5a57b62491e749441c6 *data/hapmap_geno.RData
195259fc6e2cec74aa0f05627acec6b2 *inst/CITATION
1700db0dae393a163596f21c0656b0fc *inst/doc/SNPRelateTutorial.R
883e70ab100acdb1f25834486d9f618f *inst/doc/SNPRelateTutorial.Rnw
5ed7dca5b03621d3d0e69b48906b83e3 *inst/doc/SNPRelateTutorial.pdf
64cf754f97586b65ef62f7d8cb21633f *inst/extdata/hapmap_geno.gds
3dfba33557d832612dcc0e64d942e089 *inst/extdata/plinkhapmap.bed
eb7e83a868607c6a2a7b9d23cc3ea946 *inst/extdata/plinkhapmap.bim
801414c43179a676234d6f4e8a7ba361 *inst/extdata/plinkhapmap.fam
00213792673cddfaf7ac9606dc226f14 *inst/extdata/sequence.vcf
98cd3bce4cf20fef2a59fd880233e94e *inst/unitTests/runTests.R
5939372190a8acf5e377edca729b6fc4 *inst/unitTests/runit.IBS.r
f0e4d0f322ce8686aa92e33b4c9fad5d *inst/unitTests/runit.PCA.r
253f15788e6817ebc4fcc11638cc2fad *inst/unitTests/runit.PLINK.r
361bb9248ae790dc7c25b3e50678988f *inst/unitTests/valid/Validate.IBS.RData
e9d6c067c0d637933aa7f3ab3bd31fd7 *inst/unitTests/valid/Validate.MoM.RData
3f7d403802db8ccabc2c486a65582862 *inst/unitTests/valid/Validate.PCA.RData
cbcc0a2704d48a2994ddd318b9920698 *man/SNPRelate-package.Rd
6bd7f9d1c82ce845a76ff905da592581 *man/hapmap_geno.Rd
cddcd6acdae58de945630f0a7d7f7807 *man/snpgdsBED2GDS.Rd
ca1ffbb5b40741d73219b8cf39f3418f *man/snpgdsCombineGeno.Rd
ecba6e4c2d90bdc61600c8ea07d0fce2 *man/snpgdsCreateGeno.Rd
76f7ba3fa5a106bada7f62b46239694c *man/snpgdsCreateGenoSet.Rd
24845c2bbcf3fa6fab730f1ebea903dd *man/snpgdsCutTree.Rd
ba8d761a99866c308350a7e1b25ccc14 *man/snpgdsDiss.Rd
7e933a093c90b4d79cc264e378b83ea2 *man/snpgdsDrawTree.Rd
78e522c39b5f5821437f3f497722107b *man/snpgdsErrMsg.Rd
9142cb13e010b3eb885397715411d33b *man/snpgdsExampleFileName.Rd
bc5c875c5e91324edfed903c39868681 *man/snpgdsGDS2BED.Rd
c6a42d1dc3207115324caf9e4ca1f2cb *man/snpgdsGDS2Eigen.Rd
18471a636b8762bd98a31db2c68f98eb *man/snpgdsGDS2PED.Rd
18dbf21a956ab00bdf63abe2006854d9 *man/snpgdsGetGeno.Rd
d1c0cb98e7f030fc7c2d8225f2022495 *man/snpgdsHCluster.Rd
8256556f7baef71f46c613608cd454fe *man/snpgdsIBDKING.Rd
ff0085945343bc099033e7025c8781e7 *man/snpgdsIBDMLE.Rd
44c0cb80dde0a4524ef74489bb020a87 *man/snpgdsIBDMLELogLik.Rd
a7f4752163760b0b4d4f95f5d3bd0539 *man/snpgdsIBDMoM.Rd
51054340ab24f11bc5ada0dd6642e187 *man/snpgdsIBDSelection.Rd
d71da77548ac0c373a3afb91c29dd725 *man/snpgdsIBS.Rd
60cc19ff95e5c7f28b1eed98206a8cc0 *man/snpgdsIBSNum.Rd
a4d96b074db0a9d54b6246e4de89fb1c *man/snpgdsIndInb.Rd
455e0aa34b98539f38265980979ecbb3 *man/snpgdsIndInbCoef.Rd
db20b7dab2d0a5f821b546d6e7153ace *man/snpgdsLDMat.Rd
55d58c5221cf28b77f8e1f256a31a74d *man/snpgdsLDpair.Rd
3e0bf14b480844f5d7951fe01811ff48 *man/snpgdsLDpruning.Rd
0d664421373f404a9e15a1c6effae1de *man/snpgdsOption.Rd
83f1112fd272b6293ac43ab59c43c6ee *man/snpgdsPCA.Rd
5da48be707021be6174195172a29e237 *man/snpgdsPCACorr.Rd
cbbccb53b0d368f0e1541e7060f3cc62 *man/snpgdsPCASNPLoading.Rd
d97802ed7d39cac334b46a8047b45934 *man/snpgdsPCASampLoading.Rd
e198a52986499097ab6e7a89b13ac87a *man/snpgdsPairIBD.Rd
558e14d421df8ea8ba36095a935355fe *man/snpgdsPairIBDMLELogLik.Rd
53beaa6fd2d3b490ecf76a1caf1bc556 *man/snpgdsSNPList.Rd
23c3c499840189a458819dbbf744d13d *man/snpgdsSNPListClass.Rd
7c959ebb9c3367089907df2d0f49c80a *man/snpgdsSNPListIntersect.Rd
3836a83393c333baac0d252720053a7f *man/snpgdsSNPListStrand.Rd
45062c01d0f7e097c575d24acc2075ea *man/snpgdsSNPRateFreq.Rd
ae7c1b6265faa32522919f117204d5c2 *man/snpgdsSampMissrate.Rd
4dedddb94d86bc24c3983b82a2a46bee *man/snpgdsSelectSNP.Rd
ee7da5bcdaa5ba3cd73b7082c690fb12 *man/snpgdsSummary.Rd
4452d1f5088c6b5f2dd82831a27b0bf0 *man/snpgdsVCF2GDS.Rd
262024875c8ea231522f791bab5ffdf5 *src/CoreDEF.h
d37664580378e87344012019d080c8bf *src/CoreGDSLink.cpp
11f6592c354ea26db3c9bf02f31858af *src/CoreGDSLink.h
869c3c72b7e4e3f97c32167521a4299b *src/Makevars
c71d2262009989cca88a258a04f59524 *src/Makevars.win
40f28b8bc2b1c71269e3dc27c844a4e9 *src/SNPRelate.cpp
0ed37db150304cc049e176b0f64c4198 *src/dGWASMath.h
3f504c586425f74eb04bfaa5d5500498 *src/dGenGWAS.cpp
62473e989b4596e6f3374986958b2db2 *src/dGenGWAS.h
cffa6b30f0e4732fd3a3f686e67f54aa *src/dType.h
ce62540277c3b25ea35e69f28c084b04 *src/dVect.cpp
f4319792f9bfd978f488d12bdba2cb8f *src/dVect.h
765863716f8636537e1d6f81a4b308a7 *src/genIBD.cpp
2acfe33f9cf6dc3aa12f10f62a0555f3 *src/genIBS.cpp
6f834dd62771e258dfc2d45e07fdbaaa *src/genLD.cpp
1cf905d789ce853283923478ad22a4cb *src/genPCA.cpp
b2a430f628ba19f9534311945243dbde *tests/runTests.R
2e46d7b0cdea051f4e0c287a541b01cc *vignettes/SNPRelate-Flowchart.png
d09d6bb49f8d52c65e39ba5d4eb6a1dc *vignettes/SNPRelateTutorial-IBDMLE.png
883e70ab100acdb1f25834486d9f618f *vignettes/SNPRelateTutorial.Rnw
