3d9edecf40431ed2f9c2cc102a979fb0 *DESCRIPTION
86d1ff8b7633c437f24bd5810e680549 *NAMESPACE
aaef36bf08dbb19eab2f27aa59da66d6 *NEWS
86b7f37c17237a70d8536277c7bc8558 *R/main.r
7b13a50d91c1c5a57b62491e749441c6 *data/hapmap_geno.RData
d3d0f8bd4037a0827d4cb1e050d03196 *inst/CITATION
8b213216941219a04571691b31c280bd *inst/doc/SNPRelateTutorial.Rnw
2b5dd568cd1d632ef708b9d7139a03f2 *inst/doc/SNPRelateTutorial.pdf
64cf754f97586b65ef62f7d8cb21633f *inst/extdata/hapmap_geno.gds
3dfba33557d832612dcc0e64d942e089 *inst/extdata/plinkhapmap.bed
eb7e83a868607c6a2a7b9d23cc3ea946 *inst/extdata/plinkhapmap.bim
801414c43179a676234d6f4e8a7ba361 *inst/extdata/plinkhapmap.fam
00213792673cddfaf7ac9606dc226f14 *inst/extdata/sequence.vcf
98cd3bce4cf20fef2a59fd880233e94e *inst/unitTests/runTests.R
5939372190a8acf5e377edca729b6fc4 *inst/unitTests/runit.IBS.r
f0e4d0f322ce8686aa92e33b4c9fad5d *inst/unitTests/runit.PCA.r
253f15788e6817ebc4fcc11638cc2fad *inst/unitTests/runit.PLINK.r
361bb9248ae790dc7c25b3e50678988f *inst/unitTests/valid/Validate.IBS.RData
e9d6c067c0d637933aa7f3ab3bd31fd7 *inst/unitTests/valid/Validate.MoM.RData
3f7d403802db8ccabc2c486a65582862 *inst/unitTests/valid/Validate.PCA.RData
ef6e6495a7bed97b13b1ac8612bf9614 *man/SNPRelate-package.Rd
6bd7f9d1c82ce845a76ff905da592581 *man/hapmap_geno.Rd
cddcd6acdae58de945630f0a7d7f7807 *man/snpgdsBED2GDS.Rd
ca1ffbb5b40741d73219b8cf39f3418f *man/snpgdsCombineGeno.Rd
ecba6e4c2d90bdc61600c8ea07d0fce2 *man/snpgdsCreateGeno.Rd
76f7ba3fa5a106bada7f62b46239694c *man/snpgdsCreateGenoSet.Rd
dc0b04087d3c01455d8bdfe9d63b8e45 *man/snpgdsCutTree.Rd
0beb79d4ce6e6e076f55b217f129f639 *man/snpgdsDiss.Rd
378cdf60a3eb6509b74038b8c78ba89b *man/snpgdsDrawTree.Rd
78e522c39b5f5821437f3f497722107b *man/snpgdsErrMsg.Rd
9142cb13e010b3eb885397715411d33b *man/snpgdsExampleFileName.Rd
f3f84904be0761db34e4a92e12145f2f *man/snpgdsGDS2BED.Rd
cf5323c12909160ea76a763efe5b300c *man/snpgdsGDS2Eigen.Rd
a62f1d1a1734ad3de317cc8e80023d90 *man/snpgdsGDS2PED.Rd
c1087e027d81fc3d55e83302a881895a *man/snpgdsGetGeno.Rd
0c0b3dce5bf3f16e8368bc747da62e8f *man/snpgdsHCluster.Rd
38e0efbf8492a0ce27c6f637cb7ef532 *man/snpgdsIBDMLE.Rd
ebfb98233d730447d1c78b6cb6477c56 *man/snpgdsIBDMLELogLik.Rd
e7e2dd1ef47ae30f8aa001da5ef8231c *man/snpgdsIBDMoM.Rd
51054340ab24f11bc5ada0dd6642e187 *man/snpgdsIBDSelection.Rd
3a7d40d43f4a2d884624788defc70ef6 *man/snpgdsIBS.Rd
8dfe7e6a8acbaecfbdeadb3bec7efcd1 *man/snpgdsIBSNum.Rd
a477705e635f6256b80939e79ad92ab9 *man/snpgdsIndInb.Rd
455e0aa34b98539f38265980979ecbb3 *man/snpgdsIndInbCoef.Rd
f67e08b732441c92f48537f669d847a4 *man/snpgdsLDMat.Rd
0f22c235f71222cf3619f3b06ba39f7b *man/snpgdsLDpair.Rd
471d958b25a7791b06d6337029a6e7fd *man/snpgdsLDpruning.Rd
112b893cdadaae56f2168797f3ae35e7 *man/snpgdsOption.Rd
e27a3612c0fd1eca224f1176a14bed5a *man/snpgdsPCA.Rd
9380099360a6f939b3e2ff97d5aefc70 *man/snpgdsPCACorr.Rd
15d2734ffeb2c95e2316ab49b02657ee *man/snpgdsPCASNPLoading.Rd
b21bc510bc67fb2a599c0c4c371a9691 *man/snpgdsPCASampLoading.Rd
e198a52986499097ab6e7a89b13ac87a *man/snpgdsPairIBD.Rd
5098871304f465615db6aa6d351d8013 *man/snpgdsPairIBDMLELogLik.Rd
c2087542e1b235fad2ddb892ba9f85b6 *man/snpgdsSNPList.Rd
23c3c499840189a458819dbbf744d13d *man/snpgdsSNPListClass.Rd
7c959ebb9c3367089907df2d0f49c80a *man/snpgdsSNPListIntersect.Rd
3836a83393c333baac0d252720053a7f *man/snpgdsSNPListStrand.Rd
7e8a9f56ac12013dcfa43692202291c8 *man/snpgdsSNPRateFreq.Rd
d8b626592424ce95bf287f815ca417a4 *man/snpgdsSampMissrate.Rd
8042ef5fc41f49d74d285f67ed08b851 *man/snpgdsSelectSNP.Rd
e1c9104c5ae8267b5655380ee27a0ecc *man/snpgdsSummary.Rd
4452d1f5088c6b5f2dd82831a27b0bf0 *man/snpgdsVCF2GDS.Rd
262024875c8ea231522f791bab5ffdf5 *src/CoreDEF.h
d37664580378e87344012019d080c8bf *src/CoreGDSLink.cpp
11f6592c354ea26db3c9bf02f31858af *src/CoreGDSLink.h
869c3c72b7e4e3f97c32167521a4299b *src/Makevars
c71d2262009989cca88a258a04f59524 *src/Makevars.win
0ed37db150304cc049e176b0f64c4198 *src/dGWASMath.h
3f504c586425f74eb04bfaa5d5500498 *src/dGenGWAS.cpp
62473e989b4596e6f3374986958b2db2 *src/dGenGWAS.h
cffa6b30f0e4732fd3a3f686e67f54aa *src/dType.h
ce62540277c3b25ea35e69f28c084b04 *src/dVect.cpp
f4319792f9bfd978f488d12bdba2cb8f *src/dVect.h
765863716f8636537e1d6f81a4b308a7 *src/genIBD.cpp
16ea8ac885f93abe2ed199f0497de658 *src/genIBS.cpp
6f834dd62771e258dfc2d45e07fdbaaa *src/genLD.cpp
1cf905d789ce853283923478ad22a4cb *src/genPCA.cpp
6f27a3fa4610e72275eea3bca2874196 *src/main.cpp
b2a430f628ba19f9534311945243dbde *tests/runTests.R
2e46d7b0cdea051f4e0c287a541b01cc *vignettes/SNPRelate-Flowchart.png
d09d6bb49f8d52c65e39ba5d4eb6a1dc *vignettes/SNPRelateTutorial-IBDMLE.png
8b213216941219a04571691b31c280bd *vignettes/SNPRelateTutorial.Rnw
