abbc542e3d9e436f720a795a571874dc *DESCRIPTION
3e89bc755f92c815c95df5280277aceb *LICENSE
089ee97142f91cf020b73f358e09935f *NAMESPACE
5451e0a2bb3e6f5e1b80de19bd46b568 *NEWS.md
1555555a7e80a4c5d134a1c3e63e5060 *R/Class-Colony.R
aa08b51797e374a37fe7b1ce9dd2dbc5 *R/Class-MultiColony.R
33c144326ed7d38d31a6ff1f95faa6c4 *R/Class-SimParamBee.R
482e6322a755ac1e7e93894ea5a518a1 *R/Functions_L0_auxilary.R
aa3308bd57927ab3a0a52329b57ae53e *R/Functions_L1_Pop.R
f46eebb7414433fefad7e789ee6a053b *R/Functions_L2_Colony.R
b92a6c1fefaf8a6f47a262b997c8fc99 *R/Functions_L3_Colonies.R
077dfd9b803e077da674b33bb0151575 *R/SIMplyBee.R
d83ab7d6964db32840ef0dd088b01ed9 *README.md
ea124a494ad7922985532ad3b308e4d5 *build/partial.rdb
73383beffa39db2eb0226a612aed721f *build/vignette.rds
8b29cc1abdaa6566117b0aca133b6a62 *inst/doc/A_Honeybee_biology.R
dae6ca708f30a412ac23865faa944cf7 *inst/doc/A_Honeybee_biology.Rmd
569879f770585fdd80f6b98d78494eef *inst/doc/A_Honeybee_biology.html
8829e1ddc3e720bc595e978b80d692c9 *inst/doc/B_Multiple_colonies.R
e522df793d932a83d989ccd168f453c8 *inst/doc/B_Multiple_colonies.Rmd
3e45cd2e2234ebf95c235c02fc32dfbe *inst/doc/B_Multiple_colonies.html
31a0833ec9e27c47164bb912234c27ee *inst/doc/C_Colony_events.R
f32b9e2afadc161e40d9b3ae7f1ec3cf *inst/doc/C_Colony_events.Rmd
ee9c0a462ba79a2ced3a24766e47b53c *inst/doc/C_Colony_events.html
2dd03c570e3f0fee2fad6f78eae353e7 *inst/doc/D_Crossing.R
3759cd5e679901197eed5c7346d3d4d4 *inst/doc/D_Crossing.Rmd
767fc20111ae9fd5af002f4cc537c25f *inst/doc/D_Crossing.html
90f5d341aec273c5e65a64bad8218216 *inst/doc/E_Genomics.R
186d73676dd78f5c16325f56dbde1d14 *inst/doc/E_Genomics.Rmd
7f00d5ccba752b1b79f0e496fea2b3e1 *inst/doc/E_Genomics.html
c8809af9fdb11ea248f8d93e1563ff17 *inst/doc/G_Sampling_functions.R
5d33b042bf2593299779ebfb28216f50 *inst/doc/G_Sampling_functions.Rmd
3a96fc6221b74fe68783d0a364ebbcb3 *inst/doc/G_Sampling_functions.html
325103cf771718ec048798a6508e0d26 *inst/doc/Z_FAQ.R
538345438eb67c7021b8be9c36eef711 *inst/doc/Z_FAQ.Rmd
ef1fbbdefe8b202021edd0f4a124b6c0 *inst/doc/Z_FAQ.html
bb19ffca9eaefa9ca2c5b1946cceb910 *man/Colony-class.Rd
39e62e968cf7d38a8c0c52f579def7c5 *man/MultiColony-class.Rd
fa45c7d80ab04291d441db5f04d770b7 *man/SIMplyBee-package.Rd
a4aa2dfb650c5b37378c06a523c95fde *man/SimParamBee.Rd
1c9257debd7670d5bb5ae57a15e8f637 *man/addCastePop.Rd
71768d1128509e4bce7c32119cf7efb8 *man/buildUp.Rd
011688f7757131f8f579eaa4d3b8c576 *man/calcBeeGRMIbd.Rd
70f8e968d995d86761e58a9dc2394a3f *man/calcBeeGRMIbs.Rd
aa0fa2d02afded698bd1ab881688627f *man/calcColonyValue.Rd
4080ae5bb3031a103e5fb5e2fdf10364 *man/calcInheritanceCriterion.Rd
7e5b8e1f9b5616cd078227385b27fbb7 *man/calcPerformanceCriterion.Rd
43ee9228005208e7d6c03c989d80e83d *man/calcQueensPHomBrood.Rd
2ff1d31df86e27e7af649720204a00b4 *man/calcSelectionCriterion.Rd
eead6924e7fa2a0676367772a457ddc2 *man/collapse.Rd
d40c78740bee50a0bc58eca3d23bb958 *man/combine.Rd
b0876c180575cb7d320cd4d581802c80 *man/combineBeeGametes.Rd
3d4c92c30b47fc1ee9fe693497bab11e *man/combineBeeGametesHaploDiploid.Rd
83a50223e9b736dcdce3d32e8ad7ff9e *man/combineNULLAndPop.Rd
b0b250e33887dbf5f3bc81b4a59d3615 *man/createCastePop.Rd
7c2a50dd1d8d353a187f79eac8d19bba *man/createColony.Rd
6266e2a556525bebe79d60c9603b8792 *man/createDCA.Rd
8c27eae0e39645907a14493bcdfee8fe *man/createMatingStationDCA.Rd
9ac2cc5f72276bbeb2b2d215a11421d9 *man/createMultiColony.Rd
9f59bb81bc2bab2aca73a1ea2ff0443b *man/createRandomCrossPlan.Rd
b3fb17b7fef873b2493d2b8201a6d154 *man/cross.Rd
8450b927675e0dd3eeb7bdfae40e23a3 *man/downsize.Rd
954d3cd88904559c4dc693f0e7c25388 *man/downsizePFun.Rd
76f54d6dbc2b5a3698435b7810d43902 *man/editCsdLocus.Rd
b928e3d34885252a79ef1d86f27d63ca *man/figures/Hex_sticker_SIMplyBee.R
51375a25202a7a3718f24cbae626eb74 *man/figures/SIMplyBee_logo_hex.png
c78f1193352f79469f5db54c5f9eabd1 *man/figures/SIMplyBeelogo_small.png
d2a223b0ad8c5c06341c4dd6449e1934 *man/figures/collapse.pdf
2e7e98330f4b76413fa6eb4792f0d88d *man/figures/collapse.png
9f664575168e3b7974d3a4d089ef9ab1 *man/figures/founderpop.pdf
b1711a5def965fe9422707a08ae2748c *man/figures/founderpop.png
9fcd533c27130a2e7c625a324bcd9bf0 *man/figures/split.pdf
e51dce7ed4a1fa361e71fbe768fe7cc7 *man/figures/split.png
cefe2e04a9b7a4967d586d3533401b7e *man/figures/supersede.pdf
e5ed4bc9c3745219af8958d90ff2232f *man/figures/supersede.png
feafe7c630fbec73a44d6c0232200c15 *man/figures/swarm.pdf
5fe8734f0d0171737e4bd9450c89710e *man/figures/swarm.png
83ea69fc6944c6d8b66ac22682e1b835 *man/getAa.Rd
e2b0a0989a0424d1f795ebf5836428b1 *man/getBv.Rd
4ff4fb86835c9cd1d6a0c7c577c493ab *man/getCaste.Rd
8d6feea163f0ff3088a586163430d231 *man/getCasteId.Rd
29d9244fb4e6357a989846fe73503c17 *man/getCastePop.Rd
e3350e1e7e4752464192b88192fd07c1 *man/getCasteSex.Rd
2dfc9027f8e6f814bd51b893281c91eb *man/getCsdAlleles.Rd
35fa7d461c334f3aa8b7ce40f7c5200f *man/getCsdGeno.Rd
2c88cf7f54321ce123f97e2d7960404c *man/getDd.Rd
7a864ac57db986219690d8b15ad7a5c5 *man/getEvents.Rd
70400f5e577b73b92d4bd9ce894df22b *man/getGv.Rd
5085effeb2602431e7bf89651ead6fb3 *man/getIbdHaplo.Rd
31238f517127c6fefc2a6f641856e203 *man/getId.Rd
cb3dc8cf2b0a7d32fd0b2ce19a0c7839 *man/getLocation.Rd
b01f163cb4dd6be6af4687684f0e994f *man/getPheno.Rd
42baddbfb1eaf487092e44734e7a0b51 *man/getPooledGeno.Rd
4af07c9601ec6dbec19da6b191baf20c *man/getQtlGeno.Rd
4edd2cfc7c997616b8f90a9762c13bee *man/getQtlHaplo.Rd
b36ef6847a30e6026492b1fad8936692 *man/getQueenAge.Rd
eec88fc948569aecce5a58a00173d231 *man/getQueenYearOfBirth.Rd
4c6f4dd635feed9b6c29b8fc69768d2d *man/getSegSiteGeno.Rd
edf2e5f007269c5666f437973a94bd03 *man/getSegSiteHaplo.Rd
6e24ede602b0f26166119532da1ea359 *man/getSnpGeno.Rd
c1788fbc31e3607b37888e3cab1a39b0 *man/getSnpHaplo.Rd
a257558d45a90f299eb9102c98ed0590 *man/hasCollapsed.Rd
977fea2a4c36fcfadd2faa7642aa1a69 *man/hasSplit.Rd
a7ef322aae185d3c5f6e8ffa2c00f7f5 *man/hasSuperseded.Rd
8f9a6b8d9c0ab92444de137de21584ed *man/hasSwarmed.Rd
2a4e035bd8dad1b6d138c12e3ad6e66a *man/isCaste.Rd
3754a9b264e5ae81d525e852ee119fda *man/isCsdActive.Rd
2e62ec7022acb5016b0ebf4d023f5563 *man/isCsdHeterozygous.Rd
1f92ed63e016c271c771bac7a762d82b *man/isDronesPresent.Rd
644a37216f9f4be2d657f9ca03036220 *man/isEmpty.Rd
98a72be9621daf26603b9a4a1fd32293 *man/isFathersPresent.Rd
42fcd816e068ffb7507ebd4696ef7411 *man/isGenoHeterozygous.Rd
12d3b465f647bf8c8a21fc65d2f17f99 *man/isNULLColonies.Rd
851a413e2fe057f2d0733a39c9657928 *man/isProductive.Rd
d59c88459ea023c3b3f14da8017a0dc7 *man/isQueenPresent.Rd
9e3603635d8601919f3bbbda09e92bb6 *man/isSimParamBee.Rd
e070922d35131ac00247c664fcc0b57d *man/isVirginQueensPresent.Rd
66b3799135a2bb90ccee3db479d6da1c *man/isWorkersPresent.Rd
8d7262624b7cb71213887f71ef9f0b77 *man/mapCasteToColonyValue.Rd
d5b750d5972078f712851eee65c00df9 *man/nCaste.Rd
86bd67609d7d9b8724fbd382502e32b8 *man/nColonies.Rd
9a1f71f2ed5e8f7559a39980d6d48d6b *man/nCsdAlleles.Rd
e5a44aa476ab2fbe434bea069dc28c5d *man/nDronesFun.Rd
0eb9151f2b679f25251002204571c1b6 *man/nFathersFun.Rd
131d7fff6d52f66308917ca6dcadee99 *man/nVirginQueensFun.Rd
8699ac4d76403eeee520d9dc76aa124e *man/nWorkersFun.Rd
095eca86bfeac1d0e79dd858080309b2 *man/pullCastePop.Rd
957bd655a0656799d8f1d96f59f50ba6 *man/pullColonies.Rd
fb5651830460a01946a4979fef28dce5 *man/pullDroneGroupsFromDCA.Rd
5aade3879269030b23ed9f4add7af9af *man/pullInd.Rd
e237ddc1aece60c09e9f9fddf3117c20 *man/reQueen.Rd
a38ebf710979a25c048a71d5de96b108 *man/reduceDroneGeno.Rd
5c105170a048a50bdeaa4e1fa20856ce *man/reduceDroneHaplo.Rd
ac033c4cdee3e6dc44212986124cf6d1 *man/removeCastePop.Rd
7d088f521359e8d5c016276571192317 *man/removeColonies.Rd
a8cd5b2e87782a71fe21dcf408441119 *man/replaceCastePop.Rd
838d8fa0b61ed44b9a1bec9d633d61ce *man/resetEvents.Rd
c1aa515e33044ff0e035b753b42fab29 *man/selectColonies.Rd
7906324269da7ea61b488cb5df65a33e *man/setLocation.Rd
9bde89e7fc09835c73245ae838e3e862 *man/setQueensYearOfBirth.Rd
27e34a2bbc19c6e121c5194a4d497b4d *man/simulateHoneyBeeGenomes.Rd
612e1d52c8b309da0894334dd4c9466f *man/split.Rd
bea588b63ceaf39c9f18af5201ad15da *man/splitPFun.Rd
082b77ff9a0786c2e311a17cc859c31b *man/supersede.Rd
beff670137b9a1ce9cd769defa0820d2 *man/swarm.Rd
0a6e7d96e50fe4244bde1413a044be07 *man/swarmPFun.Rd
dae6ca708f30a412ac23865faa944cf7 *vignettes/A_Honeybee_biology.Rmd
e522df793d932a83d989ccd168f453c8 *vignettes/B_Multiple_colonies.Rmd
f32b9e2afadc161e40d9b3ae7f1ec3cf *vignettes/C_Colony_events.Rmd
3759cd5e679901197eed5c7346d3d4d4 *vignettes/D_Crossing.Rmd
186d73676dd78f5c16325f56dbde1d14 *vignettes/E_Genomics.Rmd
5d33b042bf2593299779ebfb28216f50 *vignettes/G_Sampling_functions.Rmd
538345438eb67c7021b8be9c36eef711 *vignettes/Z_FAQ.Rmd
