d932b8ee6f4e5b4863c391f13e430418 *DESCRIPTION
78b3feab6a0d75fcb67d5845f6f3394b *NAMESPACE
2003b04d83cb92d67f06a4373f90bc78 *NEWS.md
374eb7ac7d21aeba5bd57b46642f7bf7 *R/Ancillary_Indicators.R
8d2dc49ca09bad3ac3e716e329560142 *R/HCRs.R
a851556a40b58f66768f53a2f576cfe2 *R/Misc_fun.R
f3e15994fa974f6a4ba6b7ecdbe43fe7 *R/RCM2MOM.R
06bb983b5c3ddd187ca11f1a1cd5d4d9 *R/RCM_assess.R
6b981b09f84937f72f00af6bee966ceb *R/RCM_data.R
1f252248b5c3d42b4e7bc1352a08ea79 *R/RCM_est.R
d1b1ae7fd5fed07b679446d87c7b00f0 *R/RCM_int.R
6023e57583bcceb394e07aa039b5f994 *R/RCM_rmd.R
27dcccc2e996d39fe9c0df614e6edb40 *R/SAMtool-package.R
850e7dcf12bd572373f120e28bb764c0 *R/assess_DD.R
6444cc91107229273ceaee43fc4dfaf3 *R/assess_SCA.R
d52ea2845c3da784d4139d558db519c5 *R/assess_SCA_ext.R
1856526b0daba645a0dbe4b38d2bcd43 *R/assess_SP.R
3d8c24db8c9b14ddcdf44a9833df6148 *R/assess_SSS.R
313b44e6bb4751941c1d3f31dcc98c75 *R/assess_VPA.R
d82cebdea5b0876b2e496c684b821de5 *R/assess_cDD.R
0caf9ae25334796949a40ddb5a9dada7 *R/assess_shortcut.R
1cca8a926ed19dea0abed3fc0e7f6c21 *R/define_S4_class_RCModel.R
13654804dd1a2a2ce9e64dfedceb6579 *R/define_S4_class_assess_RCMdata.R
f0119e9c14b9498fe7623458e05730e0 *R/define_S4_class_profile.R
99d11e0921c24a5a7eee0ae7e5abe231 *R/define_S4_class_project.R
1ed91897d858106e144faf8654f39ac5 *R/define_S4_class_retro.R
7671c7645d46a7a620e6e94b5b9256a9 *R/define_S4_generic_RCM.R
feed25cfe3688140f7e89b94877ba6c0 *R/define_S4_generic_posterior.R
98ae058d4a052a7ab540ccf4e457d16f *R/define_S4_generic_simulate.R
2153610f7a3ba1aaec40b12d78f9b7c6 *R/diagnostic.R
9680469bc325628de964386c1b4dfdbe *R/document_data.R
40453d66e80cdef4b7f89cb1c11ae74d *R/interim_MP.R
20ade1eff250810e566e8574da38f5f9 *R/report_DD_TMB.R
c55db6dcbd428734258694fce49203ce *R/report_SCA.R
362051f3d8b81dafaf57887bc87a6282 *R/report_SP.R
30b0141105f3a9dd94df578947c9c798 *R/report_SSS.R
bf6c50e10fc94c5b8671d47d9759cdb4 *R/report_VPA.R
2eec6006b14f463e40882f424c37c5c7 *R/report_auxiliary.R
5371e0c880dfee387ddc6276faa7ecf8 *R/report_cDD.R
68e2c2d4b7a9bfaf6fb759fe8a111cad *R/report_spict.R
2c7b9b74b4356cfb4df4527271c061b4 *R/retrospective_AM.R
b374ec87d7da32d562374f02fbbefee6 *R/rmd_report.R
2b865c32ccd5d6a0aa7b4be760e9d56f *R/z_MPs.R
6e4df15936c2847d502945fb67feca94 *R/zzz.R
b5f6b3849ec9d1f9137aa7d90aebd2cb *README.md
f01682ffd9d5582c0d3b8a226f3c2b16 *build/partial.rdb
eb7c1691b6e8c9e1a6c270ec565a956d *data/pcod.rda
bb1b13a174ffd95d912d08fe58df4f78 *data/swordfish.rda
c81845d9cb1876d9d6db93e57ea9dccb *inst/include/DD.hpp
f4559e2012ac510ce0f7ebef2c9617ab *inst/include/RCM.hpp
c2aa0e0d0ef39a53063f3fee44954c4c *inst/include/SCA.hpp
452411ae19cb0860fc65323911cab62d *inst/include/SP.hpp
56063b35de5ef99acd07164144fd990d *inst/include/VPA.hpp
21053e2a75827ad5cc7149d810ef46ce *inst/include/cDD.hpp
fd277544762ad4a1254e3a96c01974b2 *inst/include/functions.hpp
9086698084e8fc14a92c9554e9b37381 *inst/include/ns/ns_DD.hpp
e81d73588689b4c4430d76d33ceab575 *inst/include/ns/ns_RCM.hpp
0a46cb9d039506511554768779ae4e02 *inst/include/ns/ns_SCA.hpp
bb00d8a02021703036d6c0103e7980da *inst/include/ns/ns_SP.hpp
bbbfa157d0d4c1964cf44067b26c362c *inst/include/ns/ns_VPA.hpp
1841143507ebe3add4f94f4209a40ffb *inst/include/ns/ns_cDD.hpp
6be09ad42737570050a931ea4270bb2a *man/Assessment-class.Rd
28c9584e0b25ce052bfbe0e33a10bddb *man/DD_TMB.Rd
5d82ba050eec68367c433ef47c3c5df9 *man/HCR_FB.Rd
b1891d0f8d7b2a4caab00b1b7d68395b *man/HCR_MSY.Rd
8bb766ddba1a0f957d2f72e6202d6295 *man/HCR_escapement.Rd
2f9c18e80a7d7d43a20f731f9fca44af *man/HCR_fixedF.Rd
e4f317816fe9a211c2d9ecb128bd8ff3 *man/HCR_ramp.Rd
0b5730da181f875179953930ae6de208 *man/HCR_segment.Rd
bb24c66320f00d56e592012a3dfbf745 *man/HCRlin.Rd
9fa14359e6aaf605600e1053b4ca1f7a *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
c9862f4dc21695b9321126b94edc78aa *man/Probs.Rd
70ff247b9e15479e7fd5d664a630ae08 *man/RCM.Rd
854c6a2672b4a8eee965d0b8aa81ca48 *man/RCM2MOM.Rd
a3547ecc32e62a226b30a3e9a727fd0a *man/RCM_assess.Rd
cf2f5fd633d0bbb6e828adcf4133e7c3 *man/RCMdata-class.Rd
f016394251098df35f0c72a7a23d294a *man/RCModel-class.Rd
d8adc116ada30cc3176022e9d4138e50 *man/SAMtool-package.Rd
cf2bcdf9d43cc093a07cd745842b7f48 *man/SCA.Rd
48e2cddafec676770d34e282fee81d9a *man/SCA_CAL.Rd
728355e10f10e49405f76607f2ee2ab8 *man/SCA_DDM.Rd
6a354ec2e3a0f065e5d4065b6d58ffad *man/SCA_RWM.Rd
647009f3decf38d6e56a829877242a52 *man/SP.Rd
78a028300b113f4e9feeaf7405a90101 *man/SP_production.Rd
c45de22d590d72f8a3e65d34450fa958 *man/SSS.Rd
a103a2805e0941bb0d27fa6f2818e6d6 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
72fc610fd6e59efdffa0d7905b264399 *man/VPA.Rd
be3ee8c7001efa7108beb371df4c62eb *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
e9ba8c09bf1ed9654b27f6edfb4892cb *man/diagnostic.Rd
f97caf6f39b959e728f030dbd0414338 *man/figures/logo.png
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
3e8e0200124659ebdf737b81d1a65069 *man/mahplot.Rd
bf2046a5b0cf55e19f7b6ac69b0a8232 *man/make_MP.Rd
6f8b266eedf08edaa2fd51e6c6d6d149 *man/pcod.Rd
eb9282cc8020b1e4735dc8af450cce68 *man/plot.Assessment.Rd
d8fa48790ee01bb292174b5b5c4327d7 *man/plot.RCModel.Rd
2f5e9442dabc1cdce0da73f3cb0d51d2 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
50d034fc948f7c63354a27eed7c42541 *man/plot_betavar.Rd
11384707a97e3b068c9bb3b06a45792a *man/plot_composition.Rd
ca3ac5a54bd97ba6071c10b022224d96 *man/plot_crosscorr.Rd
b54092decd1ecc77fe6cd111d29d66a4 *man/plot_lognormalvar.Rd
594582a745ed519dea9fa1fa2e825fc3 *man/plot_residuals.Rd
0b97ddfca48dce53a009c5a2a57e6e49 *man/plot_steepness.Rd
fdb3eca4543f866f3b415589334e4f59 *man/plot_timeseries.Rd
bc3f9a869c6da38591b4624d78c4c2f0 *man/posterior.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
9b9e6b388ad61199bd4b3e5fda57965a *man/prof-class.Rd
0e691ae573bf0cb7426e84eb1efe1461 *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
caf6be38ddaef7f3de8eb61ab3e71439 *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
d02f2fe992c4ff0453d6d76ffde2fa2c *man/retrospective.Rd
35b725e61e7325e571c503269bb86c6a *man/retrospective_AM.Rd
cca573d623023e6fc59dc63be14b5f1b *man/sim-class.Rd
ce6b53a8c5d86451e0fd16f1b812a230 *man/simulate.Rd
aad4fd93bebffd0a4715231390e5d58d *man/summary.Assessment.Rd
fc7af38ab1bf8aa48a9cdb8b65533609 *man/swordfish.Rd
5e2f2a37373cedc75d0d73c995fc484f *man/userguide.Rd
6aa95f33f2477fc38dc0bc28dda50e32 *src/SAMtool.cpp
