5c01d251e99a8153fe9c6fa34d5b8210 *DESCRIPTION
78b3feab6a0d75fcb67d5845f6f3394b *NAMESPACE
e4967c18c78e1163ccc1306944a5bb12 *NEWS.md
84d95ed42bdedaf8ecefc7cbc78c0b3b *R/Ancillary_Indicators.R
9aa72828b9d09f3deaf82030b609c883 *R/HCRs.R
763e463d32df2d0a19a49cb08bbba9eb *R/Misc_fun.R
d1a6523ba8d39a5bc216f2b728d0b7e1 *R/RCM2MOM.R
34c4c3f8c80234db094520726036fffa *R/RCM_assess.R
f8d2dda0a2796f82a89c55524714d56d *R/RCM_data.R
05a6978e4edb3719827771ebbabc082d *R/RCM_est.R
e36324841d2305b9339c923233760fd9 *R/RCM_int.R
f482680cbfb8890027406c2528fabae1 *R/RCM_rmd.R
e880e573fa3d7e0ae32913641afba7a0 *R/SAMtool-package.R
5c1ea53bed9836e723d4f9c82bd28241 *R/assess_DD.R
84eecab039051111ebdbf8224528c8c6 *R/assess_SCA.R
a31486c4d95186933a8d78730051f08f *R/assess_SCA_ext.R
3916a1803d2aa500d1a3e4b21f342e73 *R/assess_SP.R
16c372d032179622050af3998f70dcf6 *R/assess_SSS.R
91265f90dd9f3736f82025b67a2bbaf1 *R/assess_VPA.R
cc917f9231b8ba71fc3a3f278cad3134 *R/assess_cDD.R
bc81f15ce2747cb6becc3ce4b617cdb3 *R/assess_shortcut.R
69d9a7730b4a8f5fdbf725ef62bacae7 *R/define_S4_class_RCModel.R
a5617c0439c1607e712295dc8ad75951 *R/define_S4_class_assess_RCMdata.R
a94c8da72533b74a1cda1bf48ec090e6 *R/define_S4_class_profile.R
179ba1de0d6465d8d7a11a22005d824e *R/define_S4_class_project.R
4f2f0f32fd9bbf3a92c56e061d281ae1 *R/define_S4_class_retro.R
7c57c6d76d8af4d8200fd47123e6e12b *R/define_S4_generic_RCM.R
d1498b7c991324ae1e8d222dae56dee0 *R/define_S4_generic_posterior.R
1a5323d4758a6751aff19136bf213cb5 *R/define_S4_generic_simulate.R
8e264c0bb9e4bc3a5a89f7713fa07d5a *R/diagnostic.R
84748820ac8a5c2323222a97fa32155e *R/document_data.R
211bbbfd2746c1fcd8e09bee46d23277 *R/interim_MP.R
20ade1eff250810e566e8574da38f5f9 *R/report_DD_TMB.R
c55db6dcbd428734258694fce49203ce *R/report_SCA.R
815cb6ba8764cec92da1ce93b97f723f *R/report_SP.R
30b0141105f3a9dd94df578947c9c798 *R/report_SSS.R
bf6c50e10fc94c5b8671d47d9759cdb4 *R/report_VPA.R
a04d3275bc904b9d36cd6a72fe7c9cf0 *R/report_auxiliary.R
5371e0c880dfee387ddc6276faa7ecf8 *R/report_cDD.R
68e2c2d4b7a9bfaf6fb759fe8a111cad *R/report_spict.R
d3fb178350d401fcca68b8faecb2445f *R/retrospective_AM.R
b374ec87d7da32d562374f02fbbefee6 *R/rmd_report.R
9f6dc79ce61405a3e566aee24f1cfab2 *R/z_MPs.R
6e4df15936c2847d502945fb67feca94 *R/zzz.R
6cf019417ff5cd6e5fb7a45a474abdee *README.md
f01682ffd9d5582c0d3b8a226f3c2b16 *build/partial.rdb
eb7c1691b6e8c9e1a6c270ec565a956d *data/pcod.rda
bb1b13a174ffd95d912d08fe58df4f78 *data/swordfish.rda
c81845d9cb1876d9d6db93e57ea9dccb *inst/include/DD.hpp
b5f61b45aa7d08ee021ae190de982d86 *inst/include/RCM.hpp
c2aa0e0d0ef39a53063f3fee44954c4c *inst/include/SCA.hpp
452411ae19cb0860fc65323911cab62d *inst/include/SP.hpp
56063b35de5ef99acd07164144fd990d *inst/include/VPA.hpp
21053e2a75827ad5cc7149d810ef46ce *inst/include/cDD.hpp
fd277544762ad4a1254e3a96c01974b2 *inst/include/functions.hpp
9086698084e8fc14a92c9554e9b37381 *inst/include/ns/ns_DD.hpp
e81d73588689b4c4430d76d33ceab575 *inst/include/ns/ns_RCM.hpp
0a46cb9d039506511554768779ae4e02 *inst/include/ns/ns_SCA.hpp
bb00d8a02021703036d6c0103e7980da *inst/include/ns/ns_SP.hpp
bbbfa157d0d4c1964cf44067b26c362c *inst/include/ns/ns_VPA.hpp
1841143507ebe3add4f94f4209a40ffb *inst/include/ns/ns_cDD.hpp
8e3f5c336e12afb86ca43e1e54b6591c *man/Assessment-class.Rd
536f025b4e71997c52de5c0a8c14dd5d *man/DD_TMB.Rd
5d82ba050eec68367c433ef47c3c5df9 *man/HCR_FB.Rd
6be55d26f2a5a549e07305a4bebc05ee *man/HCR_MSY.Rd
ac6423d487d4b6caaced76dec1a5d718 *man/HCR_escapement.Rd
2f9c18e80a7d7d43a20f731f9fca44af *man/HCR_fixedF.Rd
4ee70cf56621e3aa45b01d949011587c *man/HCR_ramp.Rd
c31ea7504ad0b945be275b94f21bca45 *man/HCR_segment.Rd
deb4bfa7f63131574a169915c67beecf *man/HCRlin.Rd
9fa14359e6aaf605600e1053b4ca1f7a *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
2ff10c056dc956d9757cf4584b334bb0 *man/Probs.Rd
21f1bc9d9bba4e42ea6d4edbefc78742 *man/RCM.Rd
c22b2c2534e416c09128da8bddd0d328 *man/RCM2MOM.Rd
f8ce5efb483864182b60949219bed22c *man/RCM_assess.Rd
26be8626385a13560e6df57bd42ae331 *man/RCMdata-class.Rd
61fe79a09bade9d76ba208477909ace8 *man/RCModel-class.Rd
004a46366426e1e0b82859b518fef249 *man/SAMtool-package.Rd
6e2a36e11e546d1e4b8715a0261fcb5e *man/SCA.Rd
18e3e6a6bb8dcdc4b47942c80aed66d1 *man/SCA_CAL.Rd
3d9abbd6d9bb490ea89f1ebdd9ead3ee *man/SCA_DDM.Rd
e9ba2d9617dcd7373cec544bb250d49b *man/SCA_RWM.Rd
30b496d7da223a9b19121545c643cc10 *man/SP.Rd
78a028300b113f4e9feeaf7405a90101 *man/SP_production.Rd
718b95717d9228653c22320aa91e398a *man/SSS.Rd
59966358fef98f1eac963f3750616761 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
2606215e87128f693f1dd9e8b2693db9 *man/VPA.Rd
1bd5467861ed445d3d9268f0b7a3ab5c *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
25f78f194ba4a9cf06fecc87087dab27 *man/diagnostic.Rd
f97caf6f39b959e728f030dbd0414338 *man/figures/logo.png
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
3e8e0200124659ebdf737b81d1a65069 *man/mahplot.Rd
c9e8fc672af9c2ef11dcad6840539d73 *man/make_MP.Rd
576911732ce0326f36d71dca665e6bdc *man/pcod.Rd
b8966cba16a4ae2324b6871df9b4f9f2 *man/plot.Assessment.Rd
2117bb926d06639a82022064ad99492f *man/plot.RCModel.Rd
4684b365a5407f166342634486652e02 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
b5530965d77001625145eb5889de36fc *man/plot_betavar.Rd
11384707a97e3b068c9bb3b06a45792a *man/plot_composition.Rd
ca3ac5a54bd97ba6071c10b022224d96 *man/plot_crosscorr.Rd
352fee8cf40f0207214c2e5037c7c967 *man/plot_lognormalvar.Rd
5437df95df9b46d10a5f461aeca89f36 *man/plot_residuals.Rd
06c1da01d4c059373ecff529f3b71657 *man/plot_steepness.Rd
7c351be5a6c862b2ce42e6dc3c9a0175 *man/plot_timeseries.Rd
a68349141056e60ab805ba6c1fcc5617 *man/posterior.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
9b9e6b388ad61199bd4b3e5fda57965a *man/prof-class.Rd
0e691ae573bf0cb7426e84eb1efe1461 *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
59a4a72fa94ec7334ca8636891d7c901 *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
d02f2fe992c4ff0453d6d76ffde2fa2c *man/retrospective.Rd
e7ddb3f64cbc62919a69393ad2894739 *man/retrospective_AM.Rd
cca573d623023e6fc59dc63be14b5f1b *man/sim-class.Rd
18312b092ab48432b41d4cf4162f6c54 *man/simulate.Rd
aad4fd93bebffd0a4715231390e5d58d *man/summary.Assessment.Rd
fc7af38ab1bf8aa48a9cdb8b65533609 *man/swordfish.Rd
5e2f2a37373cedc75d0d73c995fc484f *man/userguide.Rd
6aa95f33f2477fc38dc0bc28dda50e32 *src/SAMtool.cpp
