7b10c44bacc256907337325768af62f9 *DESCRIPTION
1847fd6cbc7120666f6f69c0223ee740 *NAMESPACE
d10b5a0135b71e2053189be62415c4da *NEWS.md
92274cad70436c7deff93b549badc97a *R/Ancillary_Indicators.R
1d0f9a28ebcf517c3a39aff0dbdd15d4 *R/HCRs.R
121890650d2cae5d8354d6ad8645969b *R/Misc_fun.R
b9d0e46ecbc2d0ebed2b79f96e1fbd36 *R/RCM_data.R
2a1bdade76195cf00e1e42bbd70f3660 *R/RCM_est.R
bb035202f21b9ad286d33594e195c07d *R/RCM_int.R
4f3d3633e30c57d30b54049760640260 *R/RCM_rmd.R
7607941e98581d1b47abfbc04ed0a818 *R/SAMtool-package.R
fe22a95085f2daa3bdade69a590f4ff6 *R/assess_DD.R
60176c42cbb2565261688a9aa6327cad *R/assess_SCA.R
b53e2479e15b54b32d65b71fcef15e6f *R/assess_SCA_CAL.R
39d6a15c6c10a856add6772311ddf185 *R/assess_SCA_DDM.R
224cbf6e86356e1eb76113c035a1822a *R/assess_SCA_RWM.R
89dd6d2d536cfce8b0faaa0cb993b781 *R/assess_SP.R
b7968e9d4728cbc7373d44259776dfcc *R/assess_SSS.R
4a25a75d6f45c6395d5300d8e0046c7a *R/assess_VPA.R
94fb60b31910d885304cb18b7afd34fe *R/assess_cDD.R
ee67b31d2dde14863ae58d25701dfa20 *R/assess_shortcut.R
c3bb158f0b504bda20c4b5d2812cb824 *R/define_S4_class_RCModel.R
2d72e994b2c9d4db5fcc007ee0ab18b1 *R/define_S4_class_assess_RCMdata.R
a77bd32005023bae50fce07a7eb4983d *R/define_S4_class_profile.R
db30eef74ba57cafb68973b06823ad60 *R/define_S4_class_project.R
d468a48ecad1374f26a02b68c06bfafe *R/define_S4_class_retro.R
fdd8b4d7629db2c08b984c253379f6e4 *R/define_S4_generic_RCM.R
6790782bab8be96ff5b43efebec8571f *R/diagnostic.R
84748820ac8a5c2323222a97fa32155e *R/document_data.R
a9f6f3b5fc9b5c77736158a3c59b019e *R/interim_MP.R
6194fb98ac1cca4d361eb7816da39bad *R/report_DD_TMB.R
7f300903080d40d482fc4ed70f01dd4d *R/report_SCA.R
d162df637f1f1e77f3a37b867055ac4d *R/report_SP.R
68b1ee1840c4040c6a2838630a7203b3 *R/report_SSS.R
6144c8b725fff6c3e9b5c7c0f07f7a1f *R/report_VPA.R
3818aa5fb8965d4f6436ee682a940efe *R/report_auxiliary.R
676a78457aa98bbf1a8734fc5d223335 *R/report_cDD.R
c90f31c5dc364166eb496c967fab9eef *R/report_spict.R
60eff7439a618fab0b438487f55024e6 *R/retrospective_AM.R
227e4f64d88beb648e4cf1b24ec4ec94 *R/rmd_report.R
f81c3595fa5e2186e3ec9f8f3fdda5a2 *R/z_MPs.R
4962d1a19cba08d36d8e315343f1e4de *R/zzz.R
6cf019417ff5cd6e5fb7a45a474abdee *README.md
2f533856dd2f3d0b3e16514d6bc50ed8 *build/partial.rdb
0ca7a3eb7d3ec585d683726219c1255e *build/vignette.rds
eb7c1691b6e8c9e1a6c270ec565a956d *data/pcod.rda
bb1b13a174ffd95d912d08fe58df4f78 *data/swordfish.rda
a78ecccbd1b4b53f0ffc8d7fe2b4b9ed *inst/doc/SAMtool.R
9927cf713239c306f1ffe01903aa29e0 *inst/doc/SAMtool.Rmd
6ba7c353f90b692661dbfe1c3f074332 *inst/doc/SAMtool.html
a2a31eb32ea5fa5559715a520485c5f0 *inst/include/DD.hpp
ccab5c615e8956a365116b2f9f7dc3f9 *inst/include/RCM.hpp
f853fefa19dd82b59e72e8ce58ce74f1 *inst/include/SCA.hpp
c20f493dd97956fdb98e6af0bfcd13f6 *inst/include/SP.hpp
05180817df5e836e4fb07608b829b741 *inst/include/VPA.hpp
e534e7c4fddee0d9383cd5b19bf5700e *inst/include/cDD.hpp
44e85d1be0c3ca8e315d4a1b7257c908 *inst/include/functions.hpp
9086698084e8fc14a92c9554e9b37381 *inst/include/ns/ns_DD.hpp
ebc1daacdf207e81329ee2fcf910a9f1 *inst/include/ns/ns_RCM.hpp
41ebddcd85fdaf9cb66bc0d8ce54215f *inst/include/ns/ns_SCA.hpp
c712874fb94e45cec0864453a7e11be9 *inst/include/ns/ns_SP.hpp
bbbfa157d0d4c1964cf44067b26c362c *inst/include/ns/ns_VPA.hpp
1841143507ebe3add4f94f4209a40ffb *inst/include/ns/ns_cDD.hpp
8e3f5c336e12afb86ca43e1e54b6591c *man/Assessment-class.Rd
70b92769fbb9f88b69440bde8a58fe71 *man/DD_TMB.Rd
1bf3e2f20e43a81ebac9b392c8af0475 *man/HCR_FB.Rd
45a42f91691af7556aa1b5b52581125d *man/HCR_MSY.Rd
76de67543eb4d5ee2561e4890b614867 *man/HCR_escapement.Rd
0e65155e9d287524ccc27343d01fe4af *man/HCR_ramp.Rd
1a9cee5b2518ed99d503f42589369483 *man/HCR_segment.Rd
deb4bfa7f63131574a169915c67beecf *man/HCRlin.Rd
ab9076d6c1cb30e29da33f4b13796157 *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
2ff10c056dc956d9757cf4584b334bb0 *man/Probs.Rd
847460db1cdebace157a5eac1c02c026 *man/RCM.Rd
2d1a8fc82eeffbba41fcdfb4f72f8749 *man/RCMdata-class.Rd
61fe79a09bade9d76ba208477909ace8 *man/RCModel-class.Rd
c510b62fffc85d2820644651889b3e92 *man/SAMtool-package.Rd
e4ee7c29aa2b3b4b9ac05b6fd7b6336b *man/SCA.Rd
f3b391f8f34838f748946d9e0237d5f0 *man/SCA_CAL.Rd
0892a1c8c052746580b515c539d47611 *man/SCA_DDM.Rd
016147f5db6794a4742ec4e05a9b6d2e *man/SCA_RWM.Rd
ba3bb1eddc12d7661b9cb8d2f0836630 *man/SP.Rd
69cecb2b65f7d7d27a9fe9812dcd468c *man/SP_production.Rd
098f3e14ff31d9e0d733c91d487d7fb9 *man/SSS.Rd
2df26b315791d4d623c2d07df419d368 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
2606215e87128f693f1dd9e8b2693db9 *man/VPA.Rd
454a01819ee9132e283d88cc83b14695 *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
31da4c6ef0812b98426724c28a2fa131 *man/diagnostic.Rd
f97caf6f39b959e728f030dbd0414338 *man/figures/logo.png
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
3e8e0200124659ebdf737b81d1a65069 *man/mahplot.Rd
0ae0e868700f806e03bfd176c689ff69 *man/make_MP.Rd
576911732ce0326f36d71dca665e6bdc *man/pcod.Rd
b8966cba16a4ae2324b6871df9b4f9f2 *man/plot.Assessment.Rd
8354fb1143aa13f9e940adbc77fb9976 *man/plot.RCModel.Rd
4684b365a5407f166342634486652e02 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
b5530965d77001625145eb5889de36fc *man/plot_betavar.Rd
a71572feab1bab60f650437dee046603 *man/plot_composition.Rd
4bc1401c7046e7f1a3769826e76916b8 *man/plot_crosscorr.Rd
352fee8cf40f0207214c2e5037c7c967 *man/plot_lognormalvar.Rd
5437df95df9b46d10a5f461aeca89f36 *man/plot_residuals.Rd
06c1da01d4c059373ecff529f3b71657 *man/plot_steepness.Rd
7c351be5a6c862b2ce42e6dc3c9a0175 *man/plot_timeseries.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
5a84f25a38245c0996e82219d4a831b8 *man/prof-class.Rd
72819ae7ab1ede9b026d3f820b7a99e4 *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
1b73dc8f7948dde11ad69cf800bd7d7f *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
fd3443508395579f971081da05d10044 *man/retrospective.Rd
20fab379b51d076d535807b32da8b1df *man/retrospective_AM.Rd
aad4fd93bebffd0a4715231390e5d58d *man/summary.Assessment.Rd
fc7af38ab1bf8aa48a9cdb8b65533609 *man/swordfish.Rd
856cb7fd04c2c6731ce85c4c979cc5be *man/userguide.Rd
6aa95f33f2477fc38dc0bc28dda50e32 *src/SAMtool.cpp
9927cf713239c306f1ffe01903aa29e0 *vignettes/SAMtool.Rmd
b4a0bf41a1eaf1559efa8e3250bce96a *vignettes/fig_assess/DD_TAC.png
3ec197c7fe04d9cb496b1b34080251cd *vignettes/fig_assess/DD_Tplot2.png
684863c6f4e4639408773e03d66b3883 *vignettes/fig_assess/DD_diagnostic_AM.png
a91f511c35ab8c13652486a5d03352f9 *vignettes/fig_assess/DD_profile.png
aca8c73b11a1c272977c925edf833f69 *vignettes/fig_assess/DD_retrospective_AM.png
2a6350673808da9e6e1f4f443950914c *vignettes/fig_assess/DLMtool_process.jpg
be67fe5fabbca2a8ddefee128df7be2c *vignettes/fig_assess/MSEtool_design.png
6f04e98d1655abb7d0772d36ef5c9636 *vignettes/fig_assess/SAMtool_design.png
ea02c21f9650267e82ad757fca69c21f *vignettes/fig_assess/Tplot.png
3df0e23da3b9584cce21a5701b075cb4 *vignettes/fig_assess/diagnostic_AM.png
2a0402c28d7a51497b377dd5c2b544f6 *vignettes/fig_assess/profile.png
26d721c30359516963bd36b453238957 *vignettes/fig_assess/retrospective.png
165b0433569f874fcb8a5224bcc7ec6e *vignettes/fig_assess/retrospective_AM.png
