78089e6ba2697c399feb55a68da2c0b5 *DESCRIPTION
2506fdc21ac11903688c2d94015593c3 *NAMESPACE
887f8c06530010813dec9a25a019da86 *NEWS
b63d5da18a006d210c019333bf1c8491 *R/affine.R
e239adb267ea43cf931447ac81c20875 *R/image.R
11ac82ea32cdb450252cbd15c23625b1 *R/nifti.R
615cede913af1fdbf082eec0f71edffc *R/niftyreg.R
107fd17849d6729148dec81e16acedab *R/transform.R
5001f153bf0e5495a4d1bfb1205615a7 *R/zzz.R
5a349a2e668833758ddb53a50d279e4c *README.md
106c7f21790ba216093e50228e3c652c *cleanup
5746480f74295f61d04f625abf048367 *configure
d7aa12a035151663095d8ea7389ca1f5 *configure.ac
598b4a235a3823de6a49d15315cc3531 *inst/extdata/affine.txt
307db26523b8b03fe4c799fa9e895320 *inst/extdata/control.nii.gz
30c091d208079613a19efc08f87849de *inst/extdata/epi_t2.nii.gz
12850cf4c6d768afd0c8d0daa187c625 *inst/extdata/flash_t1.nii.gz
1d42f430556750774250a3e758baf2b3 *inst/extdata/house.png
aae4dd824a4809d33d90c1e340322ba1 *inst/extdata/house_colour.png
25b02acd13939ef3af06d348d80a54ff *inst/extdata/house_colour_large.jpg
ca3ed70d5f134634e5dab152653b0021 *inst/extdata/mni_brain.nii.gz
75f447eadaa7a2a46567f4840c1a3417 *inst/tinytest/flirt.mat
065f7f7aaaea2d61f5a5d46ce12c4880 *inst/tinytest/test-15-affine.R
d7903139fbae6e8328576e95a1d2733c *inst/tinytest/test-20-niftyreg.R
be5c0003fb2fbfa6cafd7be558ecfded *inst/tinytest/test-25-transform.R
64fa4592305c6a23d65094496c60812e *inst/tinytest/test-30-multireg.R
81640ea6456a01a82bddbc81af5ac015 *man/affine.Rd
2b262dc965392db6d8848d9e025d28fe *man/applyTransform.Rd
5ebdb2899b3c0643869fbb96c88e9ed0 *man/buildAffine.Rd
d0eab0f4ca8cc1ac48036381abe54578 *man/composeTransforms.Rd
cf7536cf5fc8806359dfe6a8c3f32a31 *man/decomposeAffine.Rd
496f233e676e8732f40c0c705512e286 *man/deformationField.Rd
f7d7bd4ab09d603bd151f9aa2677197e *man/forward.Rd
22c2aa9b5e1002f3df44fd11ce71a0f7 *man/halfTransform.Rd
bd957b653b8dffcc4af3a29707301c7c *man/invertAffine.Rd
607581c11c60ae2e24f6dc6173d63aab *man/isImage.Rd
ca5a80dea1c66c6ab17a622cea649dad *man/jacobian.Rd
bab30a8c0edce8656c944ed73bb8f15a *man/niftyreg.Rd
e9fc2b04bfffba4a30074e99e8fd1e83 *man/niftyreg.linear.Rd
41e0297ba3db678c6979b273255ba5e0 *man/niftyreg.nonlinear.Rd
bd75654ada35e4c3349be7c962764dfa *man/readAffine.Rd
1bcfec0a7f60b3ad23803772ea597eed *man/readNifti.Rd
a3207a9e97541c8454a23205d18b9328 *man/reexports.Rd
42dddc269b9146d2e1f221cfa4ac0a0d *man/saveTransform.Rd
f91e51170b89edb0e9ba08a57ce98702 *man/similarity.Rd
47363640a507b575ecbc770602ec36c2 *man/translate.Rd
6ae1828546bed244f3a2b2fbded65c72 *man/writeAffine.Rd
d067a5bb7971ffc1ee7c1e09fb80046a *src/AffineMatrix.cpp
dcd6e3c2edefcbae585e5606c59c59fc *src/AffineMatrix.h
52d6dde5b1f025e99c0e421a9aa290aa *src/DeformationField.cpp
0de493004392c4cb572a7bbb124e2326 *src/DeformationField.h
ab48d2ba37ee3a4f562996b2c8d2d7e4 *src/Makevars.in
e9811e4214763e35259e7caa638ddea5 *src/Makevars.win
4fb8ebfb9d15b300a5dd024a7d91fa7b *src/RNifti.cpp
8c6e2d68bafc9c0ad2f526574fd6bde4 *src/aladin.cpp
249271a0980a471689a0bc76ef74a644 *src/aladin.h
886177cbaacdb33452c284d3e1a2752e *src/f3d.cpp
39c07b986d125c17a4a4b940fd44730d *src/f3d.h
12edc3eebd1f1f16f4e16d8a8bca2c53 *src/helpers.cpp
c2916f88b994f4366a47f3570d532553 *src/helpers.h
04e007b18fe8631a6845f3756bfc6642 *src/main.cpp
f31c934e1d7c3c327586080f9ca4d86d *src/nifti1_io.h
350bc3d9b229c400f739c43c6cb4fddf *src/reg-lib/AffineDeformationFieldKernel.h
b4a5a0e8a34d2832e0d324798d48ae43 *src/reg-lib/AladinContent.cpp
d5f15dafdd26b27257cfefe71244b3b0 *src/reg-lib/AladinContent.h
9f2189492c61ca62b58e3f2f623cf2e3 *src/reg-lib/BlockMatchingKernel.h
e4eb35219f56e169b8fc41325c7d7270 *src/reg-lib/ConvolutionKernel.h
e637a36dc958452509cee193c7729701 *src/reg-lib/Kernel.h
b83e8dd55081347d8b7a3e91948a353b *src/reg-lib/KernelFactory.h
c26a920646b6c0d740ef0fc873954168 *src/reg-lib/Kernels.h
09e8675620d49969793075af4031dea8 *src/reg-lib/OptimiseKernel.h
0da7c788a6d1e7c0e14c434e859af0df *src/reg-lib/Platform.cpp
e65b97d7a938db264d20dea20e6e0b54 *src/reg-lib/Platform.h
19e9a4c8a2b0713f48e590fb4478bdad *src/reg-lib/ResampleImageKernel.h
8064a3139d121d20b29efd37e625b38b *src/reg-lib/_reg_aladin.cpp
27dbe11caf6d5288da6b37e08c0523b3 *src/reg-lib/_reg_aladin.h
2701b36e985746437157d7d083b053f6 *src/reg-lib/_reg_aladin_sym.cpp
aea430072ea3531d262ad4be53a7af56 *src/reg-lib/_reg_aladin_sym.h
680b0a463e0bcef35cc8ec7c201efe72 *src/reg-lib/_reg_base.cpp
797715c8f75fbdb75a72c0dcab483aff *src/reg-lib/_reg_base.h
43c05df45e9711b2cb296b2b655de9ae *src/reg-lib/_reg_f3d.cpp
3dcc3bebe63e5d9b6f4a797f7aece21e *src/reg-lib/_reg_f3d.h
ec19404bd4d586b2860dca4a2307a858 *src/reg-lib/_reg_f3d2.cpp
b4716ce9bdbb776306f41ad9cdfe520c *src/reg-lib/_reg_f3d2.h
ccc3f125f8db27112af861a92c584989 *src/reg-lib/_reg_f3d_sym.cpp
bedd7e12ddaa4e8e58c45d41710a5f4d *src/reg-lib/_reg_f3d_sym.h
0f24bca851a789cdb028ccc523815839 *src/reg-lib/cpu/CPUAffineDeformationFieldKernel.cpp
77ca805a1822893d43d72be4bee7a7a2 *src/reg-lib/cpu/CPUAffineDeformationFieldKernel.h
b13a37074be9f453f35e937869cc2d5f *src/reg-lib/cpu/CPUBlockMatchingKernel.cpp
cb689cd2f7efc4296347a20421c1fd50 *src/reg-lib/cpu/CPUBlockMatchingKernel.h
f2405398c32ef1a525f6f484676184ed *src/reg-lib/cpu/CPUConvolutionKernel.cpp
db7765b3126a0ab7e4c65943f0e07d75 *src/reg-lib/cpu/CPUConvolutionKernel.h
3041c97376d0a0970052337555c2e196 *src/reg-lib/cpu/CPUKernelFactory.cpp
0420a318d02c6617e00479d352ee22f2 *src/reg-lib/cpu/CPUKernelFactory.h
5ae49a8bdc53d45b2fdbf9b3f7a5d2e0 *src/reg-lib/cpu/CPUOptimiseKernel.cpp
db0a8defaf1d9c4aadbe4c93b15d2a9f *src/reg-lib/cpu/CPUOptimiseKernel.h
c17b8fffc38d92d66b4ef2c53297f5da *src/reg-lib/cpu/CPUResampleImageKernel.cpp
4a90fdd1308dd6d25584d1a247081497 *src/reg-lib/cpu/CPUResampleImageKernel.h
64ae25694f2d6968afe55684824f754b *src/reg-lib/cpu/_reg_blockMatching.cpp
ab06678470d64fc1c57fe55edb4bb827 *src/reg-lib/cpu/_reg_blockMatching.h
f25ef172afc54a6b3baed086a324b4ca *src/reg-lib/cpu/_reg_globalTrans.cpp
6173450fc3fc945dbf8a0d8879390151 *src/reg-lib/cpu/_reg_globalTrans.h
8a78d77eb62cb7bb216501002b4e3b80 *src/reg-lib/cpu/_reg_localTrans.cpp
58dc11c3f61dafdb54720bf8391b0594 *src/reg-lib/cpu/_reg_localTrans.h
a802cd51a9d34ffe1e643ea851db556e *src/reg-lib/cpu/_reg_localTrans_jac.cpp
d17e6b1259b7433444bea7a56241bcd8 *src/reg-lib/cpu/_reg_localTrans_jac.h
2bf51cf262edb17bff29ce1ef35a8d01 *src/reg-lib/cpu/_reg_localTrans_regul.cpp
674f895161944e1575ca2d4e9bc05622 *src/reg-lib/cpu/_reg_localTrans_regul.h
256de9f9b72ad3876bd098b258687d35 *src/reg-lib/cpu/_reg_macros.h
dcd6b197ee05e0e241a6efb1630c20a6 *src/reg-lib/cpu/_reg_maths.cpp
145d07bb5c7e50914afc589fb60398ea *src/reg-lib/cpu/_reg_maths.h
e5a902ae57c1a8d9cb9bd60f45d915a0 *src/reg-lib/cpu/_reg_maths_eigen.cpp
3bc83d4cf36bf484a1e5cd8dd679e940 *src/reg-lib/cpu/_reg_maths_eigen.h
de9ff6009b7c9467023cfac0c397d117 *src/reg-lib/cpu/_reg_measure.h
cd89d524d69359ae637aa28976b9c377 *src/reg-lib/cpu/_reg_nmi.cpp
190ac6739b27eaa94548c3e6db77893b *src/reg-lib/cpu/_reg_nmi.h
cee2eda54bf29d1cd2d47fe5f5ee82aa *src/reg-lib/cpu/_reg_optimiser.cpp
ec33f633f3dbf299c44c0c5ad3c76aa8 *src/reg-lib/cpu/_reg_optimiser.h
51d1841e364562e865a61066ff886424 *src/reg-lib/cpu/_reg_resampling.cpp
34115a7828aabd79104003f617cfbd18 *src/reg-lib/cpu/_reg_resampling.h
a32d1fb0c91553f6101997fee5fef284 *src/reg-lib/cpu/_reg_splineBasis.cpp
84b010bd6671bf6c46b4f6eb4d8905aa *src/reg-lib/cpu/_reg_splineBasis.h
1de8af38211dc0864c5fb7e87c3747d2 *src/reg-lib/cpu/_reg_tools.cpp
8671e8320c908a9efbd95834a258792c *src/reg-lib/cpu/_reg_tools.h
f9792b7ba3bdea5bf731919a66a44a6a *tests/tinytest.R
5ce418c66a04e85a219e930cf1ba92aa *tools/figures/house-1.png
e309dfea31f7c8924bf891f6362032a9 *tools/figures/house-bw-1.png
79a7594668c2cf89e26a75bb838d9de5 *tools/figures/house-halfskewed-1.png
f8b220ef4fd74fbf9d15d3bc922de1c4 *tools/figures/house-reskewed-1.png
f8b220ef4fd74fbf9d15d3bc922de1c4 *tools/figures/house-skewed-1.png
e45ed900110cc3221aa56e6c64470d4e *tools/figures/house-transformed1-1.png
2b628aed31fda7e989c391b7a4da7a6d *tools/figures/house-transformed2-1.png
49e74c3d41fe34182aa4b1ad534cfd18 *tools/m4/ax_openmp.m4
