bf09479de9f8905a6bc5df93822bba87 *DESCRIPTION
15d87f8d4ecfd954c8dd3fc2b69a0cbb *LICENSE
845f35f2fff18486e337858e214617ed *NAMESPACE
f9d03339f29a3bb14d8cabddcbc75190 *NEWS
821583aba2ad0b9aac4808df38989fbc *R/add_basic_meta.R
b1acd21560ce746b3fa1e33346c1d4d9 *R/add_characters.R
8a3742fe5e603f306cef2a96ae1e9b8e *R/add_meta.R
5cd943276adbf9f17f5230085652e9e9 *R/add_namespaces.R
a42db5ed7e78b983aa7d4cae3927f87b *R/add_trees.R
f4b327981b2104ea7f458bf521e74176 *R/character_classes.R
5c32c0147787842e47825955c972aeb4 *R/classes.R
eeb4a688d49a71b887d4720a1730174d *R/concatenate_nexml.R
274e5b1d797295c940c51dae5cefab3f *R/get_basic_metadata.R
71fd6c71206058d0cf1a5e9879662e3e *R/get_characters.R
003fb16feefaf0fd999ec9a1224a0602 *R/get_metadata.R
fe892d1d2be5fff56f37b24e89515f87 *R/get_namespaces.R
f561b1ded0a06a5d225d77a0aa39241b *R/get_rdf.R
7a33762833a0441de7b1ac1d99504023 *R/get_taxa.R
3a890d1b39f18a08b0f4c7d94fe0d57b *R/get_taxa_meta.R
323a810bfdadcb830fd013011d4c40d4 *R/get_trees.R
f8c0a9c2cec4bcbde80170ee767eba13 *R/internal_get_node_maps.R
2c2f1c91251d019f03d99e61c62c42cd *R/internal_isEmpty.R
3372a2273979f5336464963d70fb710c *R/internal_name_by_id.R
88264b69fef8bccbdcb1619f7d8c80cf *R/internal_nexml_id.R
71a4b1b132719c58e5c5d7b4d8bc919e *R/meta.R
a0eb07febda79bb9019c22cc1de272bf *R/nexmlTree.R
8e1b70f3620578164ee69c83abaae05d *R/nexml_add.R
eaf388a4f6baa30b25470711aae80073 *R/nexml_get.R
8c9aa039421b472839a151b9c95ea5c5 *R/nexml_methods.R
a3ed5cf4bcd243452e87c95e78a84284 *R/nexml_publish.R
63e9cc50076b19cc883d4d3ebae0fa48 *R/nexml_read.R
f36974335b9cf2b7cf60cfc99eced908 *R/nexml_validate.R
3065770b1040bc175c9b11de5662baac *R/nexml_write.R
0276d4ac39d1e1ded78cbbd04da72576 *R/simmap.R
7b7d400236ab6cfa6fe179224f9fa20c *R/taxize_nexml.R
a86cc403e5fb51a37cbced0601468a01 *README.md
d266ec6485da69620b02b6e7cee61763 *build/vignette.rds
3a5cfbbc09833527ce902eb774db5a80 *data/simmap_ex.rda
b2e0de0418b8c0fa9efed1fa5475a534 *demo/00Index
5bb8b588882878ecd86680b26e79a5e9 *demo/sparql.R
a7ba86ba5a8e6ed654b2faf068d665dc *inst/doc/S4.R
cf3f47f24e945e8258e5df3d447f509c *inst/doc/S4.Rmd
65d1e01a870615fe2aaee99f462a9a65 *inst/doc/S4.html
12a0995b3f1129d5ba6685beed5d164c *inst/doc/metadata.R
93e452d7bc5e213191d7e22781edda33 *inst/doc/metadata.Rmd
9b47e98360d4b50a6a3ade83a4a3506a *inst/doc/metadata.html
90daf8f0bf53cfe7cbfd4f2351319e2c *inst/doc/simmap.R
87f05f59fb504698ea3fd69c09cd2b1d *inst/doc/simmap.Rmd
fda10aa33741510b2d70ed2004f4b57d *inst/doc/simmap.html
a08f6e54ee3f739aef13b300fc33bf37 *inst/doc/sparql.R
64bbe5a0174518618dc6dd1eef9f44f9 *inst/doc/sparql.Rmd
645b3f8577e78a2d5265d37d8d7bcd7a *inst/doc/sparql.html
2de44d2898c22479b8a449767f1ab627 *inst/examples/RDFa2RDFXML.xsl
64a60bc7b825e88ba931e1da5fd08e28 *inst/examples/biophylo.xml
41cf6116441773694f8f32b88900d346 *inst/examples/characters.xml
7cfba1e69724dd93fe4a07525e419ed4 *inst/examples/comp_analysis.xml
835c4ec3a29a2a08be861f44d445fab5 *inst/examples/gardiner_1984.xml
d3a3d2519dcc6fe7b5399061db69f1d9 *inst/examples/geospiza.xml
84cf7d2d949b6a36df18bec31d4c8917 *inst/examples/mbank_X962_11-22-2013_1534.nex
727f60b2ff7bdae76ffc09452937107f *inst/examples/meta_example.xml
34b804a9a1187689fe223be6498dcd26 *inst/examples/missing_some_branchlengths.xml
2fc3d9aca072a9964a95de8a8d7e6d53 *inst/examples/multitrees.xml
e34f32b1c48ae0acd8bfab2f09971945 *inst/examples/ncbii.xml
200927eaf3dc24fd97bd607277693992 *inst/examples/phenoscape.xml
cb142aadc75b48b696ccf6d42637ff72 *inst/examples/primates.xml
1f52dfb1306c9ed696d14f805e95a498 *inst/examples/primates_from_R.xml
065eae0c3189850bcff9d838b5041f90 *inst/examples/primates_meta.xml
a64c177eae6be033dd8712e6d693b2ea *inst/examples/primates_meta_xslt.xml
8a8e3e961583a94cec32852e9b4d36e8 *inst/examples/simmap.nex
327200ae849ba639f267e42d04932aa0 *inst/examples/simmap.xml
d1740a7345534477c40477f0fc776ad7 *inst/examples/some_missing_branchlengths.xml
e49283485e7dec7c98f77c54cf6406bd *inst/examples/sparql.newick
74361320b5d4bc935ea9d09a35463708 *inst/examples/trees.xml
797825bdfed94f7c25aff9b96cbe7c09 *inst/simmap.md
b08681639f1fb62c9b59a193b7c4bbf6 *man/add_basic_meta.Rd
bbc63d13bc3a35d8823890ebf9cbcfd8 *man/add_characters.Rd
43e79219479a9e43b152ebbae1638458 *man/add_meta.Rd
1c4e9c1c8a1302ef6784b55d496edee4 *man/add_namespaces.Rd
24b31c30090bc18b9154c3d18fbc5d70 *man/add_trees.Rd
2b2acf94211bd4c194eb0af5891c1765 *man/c-ListOfmeta-method.Rd
22f1477f6ce3c08a488746d568e0258c *man/c-meta-method.Rd
ef9d7de105e88c87bec948974e1337b2 *man/c-nexml-method.Rd
91eb066251f56cdc05cd1fe1b2f4a5b5 *man/flatten_multiphylo.Rd
8a8a1c617922d40a58db10f1ba41d256 *man/get_characters.Rd
a8b9cff9a321ea78a50652e176cf4e30 *man/get_characters_list.Rd
e9359ecdcbb21a84505a83c65ced2f82 *man/get_citation.Rd
0d537a3760ad2aabdc082882aaaf1b6e *man/get_flat_trees.Rd
006bcb1170e5915731c28eea2d5e8444 *man/get_license.Rd
d404511dad17e5f47b9e02d544ab4688 *man/get_metadata.Rd
5f3fced9c25aa646f62916d027457d66 *man/get_namespaces.Rd
9930f8cf3e6080744ae352aff28abb32 *man/get_rdf.Rd
1f52732b6af330f7dee923b60c82333e *man/get_taxa.Rd
08e77354b2443b068bf96608362cab2a *man/get_taxa_list.Rd
790a84fede862fc5ce03a77a893a2807 *man/get_taxa_meta.Rd
4ed2afcfbba1c1cfa60ad43608ca6560 *man/get_taxa_meta_list.Rd
162778819c2bd9cccef753a666878158 *man/get_trees.Rd
1d968d7f7e9157d9d1dc5e8b979af2e0 *man/get_trees_list.Rd
690e203af825f1817114150846aeacea *man/meta.Rd
0d569336632dbc87774ae4bf6257d308 *man/nexml_add.Rd
0bb9bc40564d4d64a7f1014c93f69541 *man/nexml_figshare.Rd
00087f28c3ea45bbe53e88f3b2d48147 *man/nexml_get.Rd
2d87b40a59b32c711dedd43eff1db63d *man/nexml_publish.Rd
329111b47af1850418023411e9ec3fe3 *man/nexml_read.Rd
f40b55c580325e3856701afafac02567 *man/nexml_to_simmap.Rd
2b6e589f1b851b23a2d22750a5a7dd9d *man/nexml_validate.Rd
a0b2b6d6a8cea8993ae7b121a9377e8d *man/nexml_write.Rd
46526b4c4e05913b5417b33dd2ab336e *man/reset_id_counter.Rd
2bace8847261a5753b83857a0f27f67f *man/simmap_ex.Rd
98fe344f74d0193c667dcd3601283bb2 *man/simmap_to_nexml.Rd
b6a4a92b2182c57bfc248ca079f08f4a *man/taxize_nexml.Rd
3568faf2c7f5234c340b7e245b87c2ba *man/toPhylo.Rd
65b681ad5498a1def57bd6ade9dd73d4 *tests/test-all.R
c64d6a3a0af9b631471c129a0957e626 *tests/testthat/conversions.R
2a83a0474b87536e4e1f9f4441c8fa60 *tests/testthat/geiger_test.R
6750a1fc2fabdac30592f3b44c0b33e9 *tests/testthat/helper-RNeXML.R
4a961531db2de3c792e8c0a2999e8d22 *tests/testthat/test_ape.R
3656bb99afdbcd1d34068bb3c49bb94c *tests/testthat/test_characters.R
bfcd6b1cd8211111f9403a425c2d4ccf *tests/testthat/test_comp_analysis.R
4f339642ea822f53472b7f1388a74ef6 *tests/testthat/test_concatenate.R
94dde326d80b5d122f6c92b151cc5886 *tests/testthat/test_get_characters.R
84b7067fbe52a42ea40cfd500990d22e *tests/testthat/test_global_ids.R
15bdc14e960842894d04719caab12223 *tests/testthat/test_inheritance.R
bee3d1cbe658132387f22b8dbcae5568 *tests/testthat/test_meta.R
7536014afe9c3d74b23b7e77c49ecc81 *tests/testthat/test_meta_extract.R
bddf914ab9ef8870a643c31ac8480687 *tests/testthat/test_parsing.R
16a017f64abb2539015e3dd6d37a57b6 *tests/testthat/test_publish.R
5d344490119ebb2763199615e6b264f5 *tests/testthat/test_rdf.R
cebc49fccf74e658b171651b18f06f9a *tests/testthat/test_serializing.R
4ade8dd0f7398b99bcc1a6b1666efc23 *tests/testthat/test_simmap.R
44d7506356931aae1de2d8f25802b7bb *tests/testthat/test_taxonomy.R
f04b0dc0ea1ddf2637106f69183e3db9 *tests/testthat/test_toplevel_api.R
4c6ba000905bdd7fca8a212b67159817 *tests/testthat/test_validate.R
24a4d4a46c84bf205bdd7407791f15f9 *tests/testthat/treebase_test.R
cf3f47f24e945e8258e5df3d447f509c *vignettes/S4.Rmd
93e452d7bc5e213191d7e22781edda33 *vignettes/metadata.Rmd
70e3f1824013e209654f96e819ceba0a *vignettes/references.bib
87f05f59fb504698ea3fd69c09cd2b1d *vignettes/simmap.Rmd
5f8e0dfbf93b58d0f35d1005abc4518c *vignettes/sparql.Rmd
