505b26a540f06759012097d09438903e *DESCRIPTION
15d87f8d4ecfd954c8dd3fc2b69a0cbb *LICENSE
36abd7a2bbe4024af52ad2cb7b9067c9 *NAMESPACE
5e678dc6cf53cfb6e57a935d34e2b06c *NEWS
ead4930d8cbcf63ee9532da23eaff85b *R/add_basic_meta.R
b1acd21560ce746b3fa1e33346c1d4d9 *R/add_characters.R
8a3742fe5e603f306cef2a96ae1e9b8e *R/add_meta.R
5cd943276adbf9f17f5230085652e9e9 *R/add_namespaces.R
a42db5ed7e78b983aa7d4cae3927f87b *R/add_trees.R
f4b327981b2104ea7f458bf521e74176 *R/character_classes.R
e8df9aff327031794c0c468cbb305d90 *R/classes.R
eeb4a688d49a71b887d4720a1730174d *R/concatenate_nexml.R
274e5b1d797295c940c51dae5cefab3f *R/get_basic_metadata.R
18681c21bded1e01e13f8f0b9175c9e3 *R/get_characters.R
003fb16feefaf0fd999ec9a1224a0602 *R/get_metadata.R
fe892d1d2be5fff56f37b24e89515f87 *R/get_namespaces.R
8d5fa1848b3d2af7a3961f355b11eaaf *R/get_rdf.R
7a33762833a0441de7b1ac1d99504023 *R/get_taxa.R
3a890d1b39f18a08b0f4c7d94fe0d57b *R/get_taxa_meta.R
323a810bfdadcb830fd013011d4c40d4 *R/get_trees.R
f8c0a9c2cec4bcbde80170ee767eba13 *R/internal_get_node_maps.R
2c2f1c91251d019f03d99e61c62c42cd *R/internal_isEmpty.R
3372a2273979f5336464963d70fb710c *R/internal_name_by_id.R
9b3a7e3552acf23cf0193363a7644397 *R/internal_nexml_id.R
71a4b1b132719c58e5c5d7b4d8bc919e *R/meta.R
a0eb07febda79bb9019c22cc1de272bf *R/nexmlTree.R
8e1b70f3620578164ee69c83abaae05d *R/nexml_add.R
eaf388a4f6baa30b25470711aae80073 *R/nexml_get.R
8c9aa039421b472839a151b9c95ea5c5 *R/nexml_methods.R
62a1ad43be0fe7bacc51e3dbe927aa2b *R/nexml_publish.R
63e9cc50076b19cc883d4d3ebae0fa48 *R/nexml_read.R
f36974335b9cf2b7cf60cfc99eced908 *R/nexml_validate.R
3065770b1040bc175c9b11de5662baac *R/nexml_write.R
691f6b77eebe2825451557bd60df28e5 *R/simmap.R
7b7d400236ab6cfa6fe179224f9fa20c *R/taxize_nexml.R
e195203b16e6eddd2c771c9e8dc29fdd *README.md
9425ef6a18084599e7e8e11fb5c8d45e *build/vignette.rds
3a5cfbbc09833527ce902eb774db5a80 *data/simmap_ex.rda
b2e0de0418b8c0fa9efed1fa5475a534 *demo/00Index
5bb8b588882878ecd86680b26e79a5e9 *demo/sparql.R
c9c4d4ca56051090a0302be6ec36db3b *inst/doc/tutorial.R
cab84d12f27122d3d91d98ee987fff6a *inst/doc/tutorial.Rmd
411beba2ac2f7de0d872fa9c9f6570f9 *inst/doc/tutorial.html
2de44d2898c22479b8a449767f1ab627 *inst/examples/RDFa2RDFXML.xsl
64a60bc7b825e88ba931e1da5fd08e28 *inst/examples/biophylo.xml
41cf6116441773694f8f32b88900d346 *inst/examples/characters.xml
7cfba1e69724dd93fe4a07525e419ed4 *inst/examples/comp_analysis.xml
835c4ec3a29a2a08be861f44d445fab5 *inst/examples/gardiner_1984.xml
d3a3d2519dcc6fe7b5399061db69f1d9 *inst/examples/geospiza.xml
84cf7d2d949b6a36df18bec31d4c8917 *inst/examples/mbank_X962_11-22-2013_1534.nex
727f60b2ff7bdae76ffc09452937107f *inst/examples/meta_example.xml
34b804a9a1187689fe223be6498dcd26 *inst/examples/missing_some_branchlengths.xml
2fc3d9aca072a9964a95de8a8d7e6d53 *inst/examples/multitrees.xml
e34f32b1c48ae0acd8bfab2f09971945 *inst/examples/ncbii.xml
200927eaf3dc24fd97bd607277693992 *inst/examples/phenoscape.xml
cb142aadc75b48b696ccf6d42637ff72 *inst/examples/primates.xml
1f52dfb1306c9ed696d14f805e95a498 *inst/examples/primates_from_R.xml
065eae0c3189850bcff9d838b5041f90 *inst/examples/primates_meta.xml
a64c177eae6be033dd8712e6d693b2ea *inst/examples/primates_meta_xslt.xml
8a8e3e961583a94cec32852e9b4d36e8 *inst/examples/simmap.nex
327200ae849ba639f267e42d04932aa0 *inst/examples/simmap.xml
d1740a7345534477c40477f0fc776ad7 *inst/examples/some_missing_branchlengths.xml
e49283485e7dec7c98f77c54cf6406bd *inst/examples/sparql.newick
74361320b5d4bc935ea9d09a35463708 *inst/examples/trees.xml
e13e266bacbb7285ed5893df2d5c7e12 *inst/simmap.md
c9132b2af50d1e7f1998dc06f77c64df *man/add_basic_meta.Rd
66c036ea5698e7256efe582468e7eab6 *man/add_characters.Rd
1795cb8ccffd86916132fcebbbec3399 *man/add_meta.Rd
2621431295866f952bff5a49d229c116 *man/add_namespaces.Rd
694bce8d25c3b59b5728e63730ff1301 *man/add_trees.Rd
c25de2c09e10bb7c2a0201368043cfb0 *man/c-ListOfmeta-method.Rd
4fc6673baaa292b7eb4e9c0dcaf11c69 *man/c-meta-method.Rd
fdba9fd10311741ca6da79349b63b864 *man/c-nexml-method.Rd
1b76b960c3dd327cfa02eab19b9a28df *man/flatten_multiphylo.Rd
4e1bacc322b9cbc228f255eb8d4a5118 *man/get_characters.Rd
23a4e144284baee155183a4f5690278f *man/get_characters_list.Rd
a069090132d3b28d1109e0e5a121da27 *man/get_citation.Rd
592965fb6f54b3954bba30db52b1a6aa *man/get_flat_trees.Rd
d58c408b706e7eb5e2d7600fa563bbf3 *man/get_license.Rd
8bf7f6dfde8df7a752e5a1416d08abed *man/get_metadata.Rd
fb4b061954739ee23e7ccc935340d20f *man/get_namespaces.Rd
4e115cbd1b72b285dbe18d4ba8d2747c *man/get_rdf.Rd
cc285e8b06bf2d1db579027b49645b23 *man/get_taxa.Rd
6ea480dcd4b9dda462b9e897995a64ab *man/get_taxa_list.Rd
b4c55926e78ef87a11baa9ecc196db51 *man/get_taxa_meta.Rd
9aabbc41e4b38c6424ba426113525a2f *man/get_taxa_meta_list.Rd
aacaedd5154b0cbab623bf94f771faf3 *man/get_trees.Rd
192f78115fa312504a5865d9e3fdc450 *man/get_trees_list.Rd
51cd03a18cbd6b37e1afaeff531b5a2c *man/meta.Rd
3b8a1339db4c7947d0d4897db9ee6df7 *man/nexml_add.Rd
2558412f8beda7faa466d47eefe97c84 *man/nexml_figshare.Rd
35abd7cf7ee0024edb1c09c5ede99233 *man/nexml_get.Rd
69ff54b4fb6aa2d153e0d0ea181ed91c *man/nexml_publish.Rd
ae96c2a516b5356aba4a5f5bcb0d8764 *man/nexml_read.Rd
24627d81eaa0bf26a25dbea27cfdbd56 *man/nexml_to_simmap.Rd
7f76a464dfa5c1566eefeadc8674aa68 *man/nexml_validate.Rd
7fd29a19989b9dab8ba13ee4320257fe *man/nexml_write.Rd
920b12ef0938215ef3214eed4c57190c *man/reset_id_counter.Rd
489bb2c4deb5ecad7e4e7e4495076229 *man/simmap_ex.Rd
6aa564c734cd9cde63efb782b029b5a4 *man/simmap_to_nexml.Rd
d337c066a24df2b2c087b272fab65d11 *man/taxize_nexml.Rd
f7c18f1c1ed7dcf89472d808be411091 *man/toPhylo.Rd
eccf0854fd8f84076b8520c9dcc88963 *tests/test-all.R
d669197af0a711820322c0416a0b2717 *tests/testthat/conversions.R
f1b67a782ec477837e9705a3332ba809 *tests/testthat/geiger_test.R
232821401dcf38f522128f9d439b4755 *tests/testthat/test_ape.R
ebd7918ff14f8addfcda68b0a959c93e *tests/testthat/test_characters.R
1aaa53dc9b10ef412ef3f37e6965e04a *tests/testthat/test_comp_analysis.R
4f339642ea822f53472b7f1388a74ef6 *tests/testthat/test_concatenate.R
3c4a917e4e2dd0d3414ea67269d6cbbf *tests/testthat/test_get_characters.R
84b7067fbe52a42ea40cfd500990d22e *tests/testthat/test_global_ids.R
0d0e9289ad11f3cd8db3f9ba96c6ccbb *tests/testthat/test_inheritance.R
5a238bcdeba9041fb06e4cc2e2959912 *tests/testthat/test_meta.R
ab4965318e5a77be2984d72b1845e4d5 *tests/testthat/test_meta_extract.R
a46c56db5408e475a5f7072b6aa69811 *tests/testthat/test_parsing.R
5091f801f732ca932e6114a703f492a5 *tests/testthat/test_publish.R
de8c8e9f3d60a41e861a1ab091d72023 *tests/testthat/test_rdf.R
9f3ef8f7edbefb2075f1ec3a15c8be75 *tests/testthat/test_serializing.R
30288b0ce184e754f6f68b91987e14f7 *tests/testthat/test_simmap.R
f589a334279fb435aac4aa5cb644c22e *tests/testthat/test_taxonomy.R
ad229870e39d42a0f700562f88e12c1f *tests/testthat/test_toplevel_api.R
3cc1850e245667fc65090ed69c8fcc11 *tests/testthat/test_validate.R
3c00fa8a1d9507f11afb0cf8b3295bc4 *tests/testthat/treebase_test.R
6b83d44e77f1f00b630e756572ba0a7d *vignettes/Makefile
0004f7c6e9e3761ffd230e169972949e *vignettes/figure/tutorial-unnamed-chunk-4-1.png
39e93959870e05a889efc54e41755d4a *vignettes/figure/tutorial-unnamed-chunk-4.png
cab84d12f27122d3d91d98ee987fff6a *vignettes/tutorial.Rmd
e195203b16e6eddd2c771c9e8dc29fdd *vignettes/tutorial.md
