733b81b92198f7230ce81f608d2c12c4 *DESCRIPTION
acb4062dd45df11741948bba9e0da305 *NAMESPACE
58cfae7432de383aa06f8bc4fcaf55e0 *R/Analysis.permutation.R
1a6ad0962eb0c349d0deaa14e8a9aa7e *R/Extend.R2GUESS.R
3453a24ed5d369faf24a90384f46db4e *R/FDR.permutation.R
0b0efad76d234bd1904d5d16c9fd4afa *R/Postprocess.R2GUESS.R
fd95eaf18eab7a83f58c4d32c620f55b *R/R2GUESS-package.R
aec2cc26f2163550e0833d84e6eb82b8 *R/R2GUESS.R
ad9a8320ecca0e611a6fe08d776a1fa7 *R/R2GUESS.perm.R
7fa4c4ea39e2c1260c8ee1c25a8bc9ec *R/Resume.R2GUESS.R
1bb730904b960fe8c1d0c3a787971024 *R/as.ESS.object.R
7ea63553aa1dca9f69fd17da35773edd *R/boxplotbeta.R
1522f3e122c498b302c14dd50673f3ca *R/check.convergence.R
083a377a9771351094606116dd4e3e96 *R/example.as.ESS.object.R
657931cfea7233a76e736846f72aa7d0 *R/get.best.models.R
c6af5ff46fbaa1dd91468a247d476652 *R/get.g.sweep.R
7db3c93e7e37a63a262e970a7cfe314c *R/get.sweep.best.model.R
09ec83356a4b46704939005883a2b03d *R/pairwise.correlation.R
ed93b2a7ed004e1f39fe4be082309ec3 *R/plot.ESS.R
dd83bd9912207fb1d3e5dc3083607e91 *R/plotMPPI.R
d13632fc3ccbfc2270bf70c00fc09efd *R/plotcim.R
efb61d0bf1bcc70ebdec417a8082d216 *R/plotcim.explore.R
8d6c9e778cb7ccba52465564778f0fc4 *R/plotmodel.R
51ce6384515ff0131e96143392bbed33 *R/plotvariable.R
61a45658c4e1bce78cd58d1860d05b79 *R/print.ESS.R
f292411f7b17e3493f4ab298f6f370d2 *R/sample.beta.R
c98203b5003bf77ed9815411ab91b3b9 *R/summary.ESS.R
8fc57cfef59d2913e4897afc8af2bd5a *R/summarybest.model.R
95aaee474223f654d26aac638ebd1583 *R/wrapper.R
6f161c631bd784cc1d5f7861a74c4e44 *cleanup
1388a169de62718560070abac725e53b *configure
4dfd3abbf0fbbbbfb7266a4fa7498489 *configure.ac
bed011899ee91cb8c98d9c84535f066e *data/MAP.file.rda
037adad8714571e037874f8c5d364be2 *data/data.X.rda
02c398fa98ad0e54362cc4893c6c17e0 *data/data.Y.Hopx.rda
ca35d4adeba96bbf4d035b42ecb2072b *inst/Input/data-X-C-CODE.txt
18000a14c5ccf0325dde643fde9d7ecb *inst/Input/data-Y-ALL-C-CODE.txt
521f81ec2bd64c470074504255eee66a *inst/Output/Example-GUESS-Y-Hopx-command-C.txt
1926a9f3e9147a05384882c05f24f907 *inst/Output/Example-GUESS-Y-Hopx_features.txt
89f667f99ae0f87aae3e4e9b0d672d4c *inst/Output/Example-GUESS-Y-Hopx_log
eb2011be4195a0e334b74c2ed1695c78 *inst/Output/Example-GUESS-Y-Hopx_output_all_exchange_history.txt
08b9e9411952b73391bd3179ec913a6c *inst/Output/Example-GUESS-Y-Hopx_output_best_visited_models.RData
07e06c3f6f17c7cbec520e1e4d5f19e2 *inst/Output/Example-GUESS-Y-Hopx_output_best_visited_models.txt
676bd70537bd397310779c98caedd914 *inst/Output/Example-GUESS-Y-Hopx_output_cross_over_history.txt
509ea5e679573c9fd94735d98eadb557 *inst/Output/Example-GUESS-Y-Hopx_output_delayed_rejection_history.txt
8b5b93e7fe9dc34dcb95b72890f4b0ad *inst/Output/Example-GUESS-Y-Hopx_output_fast_scan_history.txt
55976cb2d7bb2876173add3074259101 *inst/Output/Example-GUESS-Y-Hopx_output_g_adaptation_history.txt
29e474346aa6b14c5839af0574f74179 *inst/Output/Example-GUESS-Y-Hopx_output_g_history.txt
2489c5b3c3106007f4b63f9cb62af5a1 *inst/Output/Example-GUESS-Y-Hopx_output_gibbs_history.txt
5ef11e7c9af561e680dfbc9eb209be87 *inst/Output/Example-GUESS-Y-Hopx_output_log_cond_post_prob_history.txt
186e6eed9b103ddda3f46ec3d9cea871 *inst/Output/Example-GUESS-Y-Hopx_output_marg_prob_incl.txt
3f04207101a5dfa2ca05aa46010f02b5 *inst/Output/Example-GUESS-Y-Hopx_output_marg_prob_incl_mc.txt
d05340e1b0e35776e1c74fdd0bdd5c7b *inst/Output/Example-GUESS-Y-Hopx_output_model_size_history.txt
0c317b76e485844979c161641cb04952 *inst/Output/Example-GUESS-Y-Hopx_output_models_history.txt
39cc975347b8081277b856692d4675df *inst/Output/Example-GUESS-Y-Hopx_output_n_models_visited_history.txt
a6f1aac52d660dfd5715f92f952f436e *inst/Output/Example-GUESS-Y-Hopx_output_temperature_history.txt
a6fd53e2e2f5b11eafbb92ee07347854 *inst/Output/Example-GUESS-Y-Hopx_output_time_monitor.txt
da06cca581918dc8cc1cdcf32ae2f3b0 *inst/Output/Example-GUESS-Y-Hopx_random.rng
3b0f20d6c0918ecdb470e52ed3ce56b5 *inst/Output/Example-GUESS-Y-Hopx_resume.txt
d98e31ca70c6861c455bc0b57a1a0aad *inst/extdata/Par_file_example_Hopx.xml
4a18e514c0522070a49f732a5efc0253 *man/Analysis.permutation.Rd
e66dc496d8c0edd248880298669e6eb4 *man/Extend.R2GUESS.Rd
4ae8acf2058b0590b7c94a9f2dc5fb3f *man/FDR.permutation.Rd
1d9077a4b59a5ef36e8c4e6280ad6485 *man/MAP.file.Rd
a168b2030ba5e938a87f3552f0392b00 *man/Postprocess.R2GUESS.Rd
4894b339799db90fae0cc1913d9aa146 *man/R2GUESS-package.Rd
447d3fab38ca940bafff40e1f886cf76 *man/R2GUESS.Rd
7dc03a76bf37275b8efe4ab7342b3417 *man/R2GUESS.perm.Rd
db73655896c42b254ed25b38159aeddc *man/Resume.R2GUESS.Rd
6127f237b20f12cbaf5fe08595ce118f *man/as.ESS.object.Rd
b5d69a51d8ea4455076e61772989a468 *man/boxplotbeta.Rd
01c4750e360b7bbd56798279aa024d9f *man/check.convergence.Rd
fee5d649fde4c1b99329a8eadc3257b0 *man/data.X.Rd
aaa61040f1d61c87678619600a5cf25d *man/data.Y.Hopx.Rd
d2cd7ec8cad498ff965f6f39ee4cc6ff *man/example.as.ESS.object.Rd
04293b16ab58aea6dd7f887e001d2bb4 *man/get.best.models.Rd
b937f5077a22947dd422610092e5c484 *man/get.g.sweep.Rd
098321279d0902699d1ca88e73feb3a6 *man/get.sweep.best.model.Rd
cd01f13bb4cb29c0b90799829a5a15a3 *man/pairwise.correlation.Rd
b30a707927e97fd8221b96700a77f888 *man/plot.ESS.Rd
bfa253a0105cb690ae2b6c04be161557 *man/plotMPPI.Rd
dcc30985adc65e2f63411efd114e3fa6 *man/plotcim.Rd
08abb7b16f4dd678cbad11510bf576ab *man/plotcim.explore.Rd
2f4d25c9a4e7fae981cca6cae497fb25 *man/plotmodel.Rd
61c59f0aff8425669227f04ad879fb72 *man/plotvariable.Rd
55aa9150c1228cfe32339168193d292c *man/print.ESS.Rd
a7c01a9779e36a723054710c31ffc076 *man/sample.beta.Rd
6715460f392df112ec41f4cd211d01fe *man/summary.ESS.Rd
4e19507304d5ac54cef024c5d36573bc *man/summarybest.model.Rd
1c058734b11f7ffb609e5f28ab7ecbf7 *man/wrapper.Rd
3fd269cb98c37e8bada379edf44484f5 *src/Classes/CM.cc
ec9399c39223139585226e0bcf11acb4 *src/Classes/CM.h
a7f9b6cd07e372938b26045a3bd40d67 *src/Classes/DR.cc
83dad107285f0f6a586cdb0d6729f3d2 *src/Classes/DR.h
f2810b7c3d31c57714de5a51101bcd38 *src/Classes/Double_Matrices.cc
0b1fc046c540062e39897eafda8ce9bc *src/Classes/Double_Matrices.h
579d3999edcd3790329c1a884d1d504f *src/Classes/Double_Matrices_cont.cc
370bbe963199b4b50004adecbfac41ad *src/Classes/Double_Matrices_cont.h
1b7e328eb2e9b6e8248fc0ba003c59ea *src/Classes/Int_Matrices.cc
e00de8e5d219c1e98ffa79188c24f3d5 *src/Classes/Int_Matrices.h
063e9fc58b968aa7a1fb7448eb3248a8 *src/Classes/Int_Matrices_var_dim.cc
16486cad37e8e27ca544754bd6245c4c *src/Classes/Int_Matrices_var_dim.h
01dc53654f07fc170bf315dbe9251502 *src/Classes/Move_monitor.cc
fe9e96bcfb69bc4055a8bff338192c8d *src/Classes/Move_monitor.h
dcc32bb1b1095809fe8297615cea284b *src/Classes/Prior_param.cc
d6395472c21cb85b04f150d0f13e24fd *src/Classes/Prior_param.h
222cc28d61bf0fc9935ad9af7f8deb16 *src/Classes/String_Matrices.cc
251c9aade0690a41271a9e3ca51c9ad5 *src/Classes/String_Matrices.h
c16de3e2c16ae40011acafd54e2b41a7 *src/Classes/Temperatures.cc
57f403f81ded47d710b3ca24b822309e *src/Classes/Temperatures.h
cb77da44b1f19bbed6a466f78ed4a719 *src/Classes/g_AdMH.cc
bab44666e5cbe24c7131b5da1a66c5d8 *src/Classes/g_AdMH.h
d8af161876d1d888a4fd375d7696d27c *src/Main/GUESS.cc
eaf96fa04d3d056d28728a9b29528e44 *src/Makevars.in
94fc1b401c4a51b75f0d5853d49d16da *src/Makevars.win
ac650366f3409eed3436d489ca1000bf *src/Routines/cond_post.cc
325ceb1a9cb514a14a15985a5ec4d405 *src/Routines/cond_post.h
6fa81256b737c3d69cddaa82e8b5c9d1 *src/Routines/dyn_name.cc
a8d96e6f05903a9bcf03cc5466a5ca9c *src/Routines/dyn_name.h
8a2503c4c2cf82b0cf6445d5d9509659 *src/Routines/guess_math.c
4937a002e3a2957dc2dde813e5b799e1 *src/Routines/guess_math.h
336d305dd963ec66503bd11f7c9b377e *src/Routines/matrix_handling.cc
ce8d86115ffd6e17cba69dc2617ade8e *src/Routines/matrix_handling.h
5ace7d339610ced64e98cd7fe7f57fe5 *src/Routines/moves.cc
51d15ad6bd22c60171b76031fd3314dc *src/Routines/moves.h
be3bb77d618561c67661117305e6ddc4 *src/Routines/post_processing.cc
1f604e497c4001d8c8a6feb9535da928 *src/Routines/post_processing.h
41b66f2a13011d6831012dd51ffa011b *src/Routines/rand.cc
dbc494aa5675c020d2b494d1d46207be *src/Routines/rand.h
6569239a72457333d06130640ba05491 *src/Routines/regression.cc
a1b4e9da8cdb7370e0c8e6274a601eb3 *src/Routines/regression.h
7cd232d99f299f6917e0c4c956d02d83 *src/Routines/struc.h
ecf3881b5bccad1a2ff8b4933f98c743 *src/Routines/xml_file_read.cc
3b787623af55eb207ca57fcd8e52f883 *src/Routines/xml_file_read.h
e07a6ac4e51e48f3c7cea5e267d90f8f *src/install.libs.R
4540ea02fa0cb660c5c6e0169c658f85 *tools/cula.m4
4a56620cc145a4c50ecd0ff874284008 *tools/gsl.m4
