181d5e719b29eaa17372e6cad6776b5d *DESCRIPTION
0b8fb0ac580f41dc055018a01a2dc893 *NAMESPACE
c355510741e336dc37dbb5da89e28454 *NEWS.md
e3c98f8dc1ac9f0dc11148c481085284 *R/CompareQuartets.R
9037f5ab060bb4ea61779c0ea6b68d3c *R/Metrics.R
690cf379c77b766e2f54d0b78c188a70 *R/PartitionDistance.R
c0b1622127d4c87c12a56852bba7ab6d *R/Quartet-package.R
b91da1ab5af790c32ad24f6b8553c238 *R/QuartetDistance.R
4b760cfd5cd53b21585e5d89ebc15e50 *R/RcppExports.R
04c5224f77dd4d82f2182a5ba7606012 *R/ResolvedQuartets.R
bae5f199e5798a6aba50fceb842ab393 *R/TernaryPoints.R
8d474ea21a861b3da7d4b1a991b3492b *R/VisualizeQuartets.R
387911d9f8b439a7e3bc48baf917db19 *R/data.R
3abda2dc9d45d8f2674c5eca3a978fa1 *R/tqDist.r
9eea1797c215f475ef2f284f596d3bbf *R/zzz.R
a9bb03a396b65419e1e674092a023097 *README.md
9ba1d2eb9f325160eda19afe237142fb *build/partial.rdb
219fc89573d71e4a433ec23b607ba91e *build/vignette.rds
4610a2fed56c2bbaec42813f44efea7b *data/sq_trees.rda
8652e28089f9113045a3d0accc60751d *inst/CITATION
8b4bfa19f14e9b13cacf2295139ba78e *inst/Get_stuck_in.md
e0ce5855ab7712d16d82a28f9fdbd6a9 *inst/REFERENCES.bib
3eb528506f6cf26de42b2f200c2e2274 *inst/WORDLIST
0491ebcca820fc95d7459984ca97db17 *inst/doc/Quartet-Distance.R
cc39000d86caba75872904b3cee13427 *inst/doc/Quartet-Distance.Rmd
51d907e5ef32a4d5dd1cbaabcb1b33b7 *inst/doc/Quartet-Distance.pdf
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51650289a5389a36e6df637bb48a242b *inst/doc/Using-Quartet.html
145fa68e8da376b4a6fb6d129550965f *inst/preamble.tex
8cd8d2957f7076b88e668e5cbd30462b *inst/trees/all_quartets.new
c77e7e425ce61ad6f4794aa761a96b58 *inst/trees/five_trees.new
866430511e1922de3d699d2bc8d4312f *inst/trees/none.new
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1dca61cfcdee4fe1b6bdbd31dbdf302b *inst/trees/quartet2.new
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24c6536d3c734d1ad27d098177e89376 *inst/trees/tree_ac-b.new
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68aa19327a16788844c103ccdb30b5c3 *inst/trees/two_trees.new
9a6eaab8ddeca800b66b85a3ed869d6a *inst/trees/unresolved1.new
69374825cf9444769488fb0f2817c357 *inst/trees/unresolved2.new
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717aecdd0f6e1e1d34c4ee0cb94100fb *man/AllQuartets.Rd
4362d397d7621f515429de74b022e693 *man/CompareQuartets.Rd
442134505af98bfe56f9c96578fc2570 *man/CompareQuartetsMulti.Rd
93578f2f4fe6ee70290ad3267b7501bc *man/CompareSplits.Rd
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20ef81e1c075d52c4f386692571f6c90 *man/PairSharedQuartetStatus.Rd
a7cc7a663932689b122fcf682df7dc3c *man/PairSharedSplitStatus.Rd
6a953d2024e2832e57b4745d072e6313 *man/PlotQuartet.Rd
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6a0239b81be42f992095f17d258be3fe *man/QuartetPoints.Rd
2df5250cfac54d5987fae7f7f5a760c9 *man/QuartetState.Rd
72c14bf56256fa5a24a469e826f43921 *man/QuartetStatus.Rd
8d6974039a1f69d11842b6fa6cc564a2 *man/ResolvedQuartets.Rd
6a6f24879de05d85568a102f6f01f398 *man/SimilarityMetrics.Rd
8d3521200c4e1b0d7f147e4b9645f72f *man/SplitStatus.Rd
ae3ad859d10a46699016223de04c908b *man/SymmetricDifferenceLineEnds.Rd
479018256c11f2543ed2f806e3f6939c *man/TQDist.Rd
adc9ffb0bb6edd8355005668f969c093 *man/TQFile.Rd
9c540df4611cfe1c2457b9148ace2d86 *man/ValidateQuartetFile.Rd
2422f54f45d416174bc2cb6debd97474 *man/VisualizeQuartets.Rd
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7a1810615a0231f6352b1ea089dbc72b *src/AbstractDistanceCalculator.cpp
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07411c233535714cdd1a6cb05dc28b9f *src/AllQuartets.cpp
623605900d2794778b71a1ee4b029acf *src/EdgeParser.cpp
5a445d40d8efad503bca4a21b2e937cc *src/HDT.cpp
183de2c5f83f773dddf06f9dac69552d *src/HDTCountingCCToC.cpp
41cd6e024e3db8a6c12da91001a3380c *src/HDTCountingCTransform.cpp
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9b555232a6976177cd0e7c214b1a3c4d *src/HDTCountingIGToC.cpp
e7ff1c0cd71dadce5a0ac249131e32e9 *src/HDTCountingLeaf.cpp
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6b00ab7b0d11b892e535e739d3e1f44f *src/HDTListUtils.cpp
7ec254fcd5912e137e0f3d965f261693 *src/NewickParser.cpp
c9181d07e3e1e6b3fca6005ddd53cf15 *src/QuartetDistanceCalculator.cpp
8c62afd3f6a0f73f784b0159cea25b35 *src/QuartetDistanceCalculator.h
fda18bb8164979d29706ff7290e77426 *src/RcppExports.cpp
ca0b0884e12bffdfbadf0beae80dfcc2 *src/RootedTree.cpp
2997b46256907d7476283f584c2c2fe0 *src/RootedTreeFactory.cpp
5d0aad726e97548e2c5b10fe6a0b1ef1 *src/TripletDistanceCalculator.cpp
6b7863db62ca71949dd871066822fe2f *src/TripletDistanceCalculator.h
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e2861a83ce5e617a44fd7733cc79bc3d *src/hdt.h
e947704ae36b3fe86509311137e433c4 *src/hdt_factory.h
0a869dc1a9de30b7d398b26ea7de412f *src/int_stuff.cpp
99f85bbc800a01299504339c2425f0fb *src/int_stuff.h
770a5874ce678207b32a85686b9ac27f *src/memory_allocator.h
1f6b14d6adb436e90de6c71a44c96a89 *src/newick_parser.h
ce775ecb23b0a9f1eaef305593426685 *src/quartet_calc.h
3a9cdb58435538672cc7fb8fd114291a *src/rQuartetDist.cpp
3162e4ae408806a2274a4acb55b5f6ac *src/rTripletDist.cpp
bfb78b07911799ac87097c3a02b2f832 *src/rooted_tree.h
09e9e5bf70fde2212aa83d74a1d14f2f *src/rooted_tree_factory.h
36376e6d90437cf1768d906ae187f9ba *src/templated_linked_list.h
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612cd26c7c4cbc45fe57f6103aff72be *src/unrooted_tree.h
9f004e030d7afdc841db44bbaebc1402 *src/util.h
66380a4702500feef2541d252e7c712f *tests/figs/deps.txt
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1f7619fabe12aeb21bfcc84680a098b2 *tests/testthat/test-PartitionDistance.R
31397703367b3a6b528874b47a395bd4 *tests/testthat/test-QuartetDistance.R
ad9c3a3ddd3cb849a81723ae0d446835 *tests/testthat/test-QuartetStates.R
5d8b99db0f8f76049fd611cb0b225e74 *tests/testthat/test-ResolvedQuartets.R
4860c3f9b6152b51096b19c6af8c1e0c *tests/testthat/test-TernaryPoints.R
e9251fa3aeb85dcedebe9de049999944 *tests/testthat/test-VisualizeQuartet.R
01cb85797c4b826f086881c248fe629a *tests/testthat/test-ZZZ-Metrics.R
cc39000d86caba75872904b3cee13427 *vignettes/Quartet-Distance.Rmd
82f9969b4cd870807feb25a4ebdcbd66 *vignettes/Using-Quartet.Rmd
