c46461f104bd2702e57997d913fcfee3 *DESCRIPTION
2db8dfa2b659059a33570d78cf258bde *NAMESPACE
0fe2992d471b72f0c7789bd4a0f49233 *NEWS.md
da32c1ffc89cdd2386857609abea2900 *R/Metrics.R
ff3529b93074f8421c7be6bcb697d22a *R/PartitionDistance.R
5ac611663e9158fb4ad7d56b31991738 *R/QuartetDistance.R
b9e8f73f0d62d92190586b1cdf752684 *R/RcppExports.R
5d4327b07c799e4fa80972855f548b25 *R/ResolvedQuartets.R
64b3258f471f63ff0fabbea71a03be43 *R/TernaryPoints.R
f294a6cf984cc4abd71aeb88c31c6ae2 *R/TreeManipulation.R
2b24fcd611e62a407d992caed80535e5 *R/data.R
0ec9dfe5fe20393fee48318f78f2873a *R/tqDist.r
f555975916d622040330b46fe00a6839 *README.md
a0f362fd8b93aa8c191f2e53e739fd61 *build/partial.rdb
b79ad0ba2f727c3242be64a4ecccd262 *build/vignette.rds
986510b093ac1a2a0be6bc2541f63719 *data/sq_trees.rda
ed7719a3db34fd9ab92bee546bea585f *inst/CITATION
8b4bfa19f14e9b13cacf2295139ba78e *inst/Get_stuck_in.md
20cde55652df535cce67dc6636691d96 *inst/REFERENCES.bib
6cbdbb3556843f8087b241138b5a1990 *inst/doc/Critical-distances.R
5b43457e428ffb5741b7de0a64125b59 *inst/doc/Critical-distances.Rmd
774941cf09de1d6fa4ee06cca27e4a58 *inst/doc/Critical-distances.pdf
4a3a15cfdcf31690c150c6fdde0eb7e2 *inst/doc/Tree-distance-metrics.R
834ce34c01870f789f3f150b62b1b6d2 *inst/doc/Tree-distance-metrics.Rmd
363d12ee31b871c93e27deeb95b080e4 *inst/doc/Tree-distance-metrics.pdf
145fa68e8da376b4a6fb6d129550965f *inst/preamble.tex
a28262dd73c1d461bf12488e636d5568 *man/AllQuartets.Rd
819554f930d160a36e47a823a018f208 *man/CompareQuartets.Rd
7a7e67ab7d64d37ae31ca7a9c073d9f4 *man/CompareSplits.Rd
f12651b1ac706376504cde752d6593d2 *man/Distances.Rd
cd56c5f95d4a52511169bcdfb465ae72 *man/PairSharedQuartetStatus.Rd
272593ffa9b91d56f5007826a1bc843c *man/PairSharedSplitStatus.Rd
e501f9ac12846111a877123cb5daf5a1 *man/PlotQuartet.Rd
7d1805c7a683ec85c8223bc6b638e1a8 *man/QuartetPoints.Rd
61d5bd16f6fa4acf6f623688bb523e9f *man/QuartetState.Rd
297dfe6504491fa0fafe125686e1085a *man/QuartetStatus.Rd
0a7f3ba7970da7347dd6cbb17011d607 *man/ResolvedQuartets.Rd
da89b86ae87820a08ba7f350ebf0090b *man/SimilarityMetrics.Rd
d2f966582d23912c8200cb300ebe48ee *man/SplitStatus.Rd
1537665a70f47f923a614820028705b0 *man/StatusToMatrix.Rd
08039bf00a04734f407f2ada459d654d *man/SymmetricDifferenceLineEnds.Rd
94893816a0939984328f0baa19bda300 *man/TQDist.Rd
c5309f42d60f54cbbda9267059511012 *man/TQFile.Rd
04f70c7678bfc9d5c48b5d9b5fd41d72 *man/UnshiftTree.Rd
5af20e4d48d72d47d54489b47be5dd58 *man/ValidateQuartetFile.Rd
c4c4e3476fe65d53a33932dd5739ffdd *man/sq_trees.Rd
05cf71c0bb384aaadaa679b36ac61afb *man/tqdist_QuartetDistance.Rd
949f31c4f003f621aa93513d6f76382a *src/AbstractDistanceCalculator.cpp
e11330ebbd1295da9af918236f64a9bd *src/AbstractDistanceCalculator.h
f14fc781ea69cf51cf97ddce88900788 *src/HDT.cpp
a1cfd9a680cb9dafddab245222256888 *src/HDTCountingCCToC.cpp
7bd8d69264ecc63298fe6acb201f189c *src/HDTCountingCTransform.cpp
a613b8f50dd95853260bd181fa5562f6 *src/HDTCountingG.cpp
927907f90b4591057dfc8fdee6e62d85 *src/HDTCountingIGToC.cpp
7570d5e22e356e610603a1f8111a9ffc *src/HDTCountingLeaf.cpp
5ebe67567af2237f5ce0013b2c3ccaa0 *src/HDTFactory.cpp
d12e8b9b1097cb87ed05f506f8088577 *src/HDTListUtils.cpp
2a0d98e09b6c547b76054914bb8564e4 *src/NewickParser.cpp
b6b6ac97525896c2170ba756d46a0722 *src/Quartet-init.c
aa843dc41f9010e6b68acf496e20f9bb *src/QuartetDistanceCalculator.cpp
8f8aba2c38f2439ffb814fab6498baec *src/QuartetDistanceCalculator.h
19df1349220bcaedba6bbd72fd379800 *src/RcppExports.cpp
d5466584aaf8c815a54a8b7aa3f26f7b *src/RootedTree.cpp
6485026285ecdfdab64248e24104b040 *src/RootedTreeFactory.cpp
43768bb461a7626f38afe0f6d68734e9 *src/TripletDistanceCalculator.cpp
6b7863db62ca71949dd871066822fe2f *src/TripletDistanceCalculator.h
a59054c096297518d8201dc37fb0df15 *src/counting_linked_list.h
ebf9c9929a1b3eb80b03ab7535b87a6d *src/counting_linked_list_num_only.h
21414985a627175c6812ecaad30a57be *src/hdt.h
1b46b8acd63e5878184bbb858bf57ad5 *src/hdt_factory.h
007164610e0708f47a97042bd8781adf *src/int_stuff.cpp
a30dc00d1999733718c87c6323caf9b2 *src/int_stuff.h
770a5874ce678207b32a85686b9ac27f *src/memory_allocator.h
f8bfc24b9db844f94776f322530a5d80 *src/newick_parser.h
ce775ecb23b0a9f1eaef305593426685 *src/quartet_calc.h
ffeeb12c379a81ef51d51820d168c81b *src/rQuartetDist.cpp
8d3fb607b992d5724adc513c5fc3a817 *src/rTripletDist.cpp
4c1745490b2eca523a13b0e14717ae23 *src/rooted_tree.h
1c5e72634bee75e6659a861f6cb440fd *src/rooted_tree_factory.h
8e23dff99f379a18a08252acaa546cdf *src/templated_linked_list.h
b4f38b2477748217cb03d7ceaf8006a7 *src/triplet_calc.h
5a4f961d87588a022a5826bbac933772 *src/unrooted_tree.h
9f004e030d7afdc841db44bbaebc1402 *src/util.h
75caacb6bd6608083128ba6db16b6692 *tests/testthat.R
d30c76ff31cf354b151bdd64d8a4ba84 *tests/testthat/test-1-tqdist.R
21288210055ce1b3710986269cf40a78 *tests/testthat/test-PartitionDistance.R
354c248f21a2d8db9702cb03a2bc844b *tests/testthat/test-QuartetDistance.R
df1955c1b64603f4103e7ac000c6bde4 *tests/testthat/test-ResolvedQuartets.R
aaa36809785bd8bf4596f92d5f9ed22b *tests/testthat/test-TernaryPoints.R
8cfb4d7e16234333b513e3e779ee061b *tests/testthat/test-ZZZ-Metrics.R
8cd8d2957f7076b88e668e5cbd30462b *tests/trees/all_quartets.new
c77e7e425ce61ad6f4794aa761a96b58 *tests/trees/five_trees.new
866430511e1922de3d699d2bc8d4312f *tests/trees/none.new
27fcf4d2ce88d537dfc7123af31bd851 *tests/trees/one_quartet_twice.new
b149fb81dd30a3ca2c912a05a735af61 *tests/trees/quartet1.new
1dca61cfcdee4fe1b6bdbd31dbdf302b *tests/trees/quartet2.new
a459cbb218d1a152e7b4b61593781063 *tests/trees/quartet_unresolved.new
94c503ebf10649687ebe687dc809e755 *tests/trees/test_tree1.new
72fab1d3604a4bb1bcaf30828a198bb8 *tests/trees/test_tree2.new
70ba65b7a40de93c0b14b7efa0eb0d31 *tests/trees/test_tree3.new
a33e2325f0f8362f37098fd0cfccdf69 *tests/trees/test_tree4.new
5c9b0117aabf90e69f83dfa6caa0b662 *tests/trees/tree_ab-c.new
24c6536d3c734d1ad27d098177e89376 *tests/trees/tree_ac-b.new
453fc4a3acddba283e8f4630145835a6 *tests/trees/two_quartets.new
68aa19327a16788844c103ccdb30b5c3 *tests/trees/two_trees.new
9a6eaab8ddeca800b66b85a3ed869d6a *tests/trees/unresolved1.new
69374825cf9444769488fb0f2817c357 *tests/trees/unresolved2.new
a546a5f909b41a448e80f09a63b8d010 *tests/trees/unresolved_list.new
5b43457e428ffb5741b7de0a64125b59 *vignettes/Critical-distances.Rmd
834ce34c01870f789f3f150b62b1b6d2 *vignettes/Tree-distance-metrics.Rmd
