d89723a41ee0a85374eef65f893a66a9 *DESCRIPTION
1834da739f984ec2f02dd49c6f3e4fe8 *NAMESPACE
0a495e3f9475a5b971390c7c3feef686 *R/AdaptiveMatthewCor.R
9fed4ac71515b14e0b63f4f75a019bae *R/GWC.R
15434782edb5b1ce365802ab158f27a3 *R/LogLogisticRegression.R
15029c7920cca6d68b812a5ff342dd61 *R/MatthewCor.R
7602ed12007dcd4da0e5621965354c6d *R/PharmacoSetClass.R
7fc5311088e26947fd7f796d68920596 *R/callingWaterfall.R
2de88f0d96792f6f10113e72ea26871b *R/combineTest.R
63a0a0087abf43b3769e391b7fe44d94 *R/computeABC.R
d04b679ddded6c5eb6f46d43fa389f2e *R/computeAUC.R
c770c2f3fb14fac544365d5b5a59eb0d *R/computeAmax.R
14e9605298d08075692f7dca37b4402b *R/computeDrugSensitivity.R
400c62c8b26c23ff6f875127d01b8f84 *R/computeIC50.R
65b059df01e0f085c4c3e4609ee1cdd2 *R/computeSlope.R
fe757c878abe46edc027f230b92b786e *R/connectivityScore.R
f340171ff08c620039716b3d429e7945 *R/corWeighted.R
ad000f8cea8b4d881dc3764137408d88 *R/cosinePerm.R
ca7678f1bc85d22ab5ee29a2451b7275 *R/datasets.R
762d5b92d0c984c4c452b236d35c8413 *R/distancePointLine.R
78db11f22fa6d6c63faf358ecc594b87 *R/distancePointSegment.R
9a2028d825e99a3501b5fe2f72c1231d *R/downloadPSet.R
192d6e6664cd01a14e771a206ab66433 *R/downloadSignatures.R
5e42407b9c24065403887a5a7b755c03 *R/drugDoseResponseCurve.R
b6432d428c4f4da547670d99272768b7 *R/drugPerturbationSig.R
bb16d9c46b3e6b8371afc46814417b2d *R/drugSensitivitySig.R
667010a91280ebad3d68d971b6c6a539 *R/filterNoisyCurves.R
f0b0649a538d904112b224c7265f4a38 *R/geneDrugPerturbation.R
7804bdef06ae3e23d9c837ce6f893517 *R/geneDrugSensitivity.R
e9e01e629d51962b4a3a6f383c92bf82 *R/getRawSensitivityMatrix.R
c4f8f35fb0cd01e1bf34d6ddc3b1241c *R/intersectList.R
fde7f47104b79c0cf8351e163e3bbe46 *R/intersectPSets.R
fd88e540bebac658d9978f753e801dc0 *R/rankGeneDrugPerturbation.R
1ff0f6b7be7c4f1567378582cb8c2543 *R/rankGeneDrugSensitivity.R
353f7e78da0c254cf719ae9d004b111f *R/signatureClass.R
10ff014033ae05f596bf73e6be9c40eb *R/stripWhiteSpace.R
d02efaa31147300a9259092e8c427752 *R/summarizeMolecularProfiles.R
66657e51ca0baa6331e57fa45cc4aebc *R/summarizeSensitivityProfiles.R
ebbf28ba6a590728c1466b2fe8da9754 *R/unionList.R
edcf760dd5ac1afe6aa704ac746b22ec *README
f937c61a0ad61ca9fcc4f15d7ecff1d0 *build/vignette.rds
9477ce904c74e105a2d2abd230350cef *data/CCLEsmall.rda
6923fe52a29450152ee9f51bac9d07a4 *data/CMAPsmall.rda
2a649c2d2f177bb68b6bab683ce9348b *data/GDSCsmall.rda
cc3c6f6048c0b30fc225de143c12e001 *data/HDAC_genes.rda
5bc7d378c90d6616d16d0cccca454353 *data/datalist
f407e1c5c77e062f1e565f12ef434fff *inst/CITATION
93207eddf25c7deb002aacc24664c692 *inst/doc/CreatingPharmacoSet.R
813c5c1f3d2d316d8f62670794ceb7d0 *inst/doc/CreatingPharmacoSet.Rnw
963ddbdf667d7faaf3edcda53240ee9b *inst/doc/CreatingPharmacoSet.pdf
18c11074ea97663337eb2cbaf1d4da0e *inst/doc/PharmacoGx.R
dca73f9655c6cb3327d0342cf25e5839 *inst/doc/PharmacoGx.Rnw
f44e5f886f44cde7fa19d039ba83392a *inst/doc/PharmacoGx.pdf
5d05cb8b8ad98c07a88fbb9c3b7efeb3 *man/CCLEsmall.Rd
593d199e90267f2ad0ee545caa136d60 *man/CMAPsmall.Rd
b354507633dc234706a862e70e336bf7 *man/GDSCsmall.Rd
137b2b0a8a6d3c8ea49b720d60e20ca8 *man/HDAC_genes.Rd
a9337f68173509dd0db46daa9ddb7ad4 *man/LogLogisticRegression.Rd
a1919f8692e63f0f1d2c005c41b41f69 *man/PharmacoSet-class.Rd
b43ad83fa8bf90999a3a1c496e8bbcb9 *man/PharmacoSet.Rd
24b5d5de92893277322f2f0e57dfaaa0 *man/amcc.Rd
c576dcfcae8003b83f7a8394cf77e558 *man/availablePSets.Rd
4d4d85490f713b1fa040d78fd4189099 *man/cellInfo-set.Rd
06fb451395ab9d7e204d9098c88bc191 *man/cellInfo.Rd
426fb820d5e1a2d669b6605ae76b1663 *man/cellNames-set.Rd
a8672902d3f16b54d7e1ff4924461859 *man/cellNames.Rd
d6e26a4a5130b9be5f187f2892c9e755 *man/checkPSetStructure.Rd
83df8a2a202048863750c960c881e3e3 *man/computeABC.Rd
ca4e5816d8db91b6ae51b6ec083756fc *man/computeAUC.Rd
32bcbdb5efeb28c978a8cee201643b9a *man/computeAmax.Rd
8236b32b43662f132c593a554605ecbf *man/computeIC50.Rd
778c2ab6793085abfdc7776ad903b75e *man/computeSlope.Rd
e29cf497479f96610cc4385422c8d6a3 *man/connectivityScore.Rd
63d8a58a0138d9f141e7de67ae2fcd5d *man/cosinePerm.Rd
5abc693166ef311fe751e267d5629b14 *man/dateCreated.Rd
4ad89996ee6ca2a757dcee57bc2c4726 *man/dim-PharmacoSet-method.Rd
8c3fc2ab799a829b273127cd166c0cb1 *man/downloadPSet.Rd
37851f98ddd211a5e19c0df487e67343 *man/downloadPertSig.Rd
4dd6fd63316ba339b57739ce2f2dee31 *man/drugDoseResponseCurve.Rd
6bcd19a37cc9f98b609e2f417a89c6d1 *man/drugInfo-set.Rd
53414c7ac59d0fd75822e3073a673d41 *man/drugInfo.Rd
a58c6674bdeb5875f5dbf4ab488e1171 *man/drugNames-set.Rd
b5faed031e6225fe7c4150b1d8f9ff7d *man/drugNames.Rd
b1425437fb75281f0cd3bc57166ce41f *man/drugPerturbationSig.Rd
443998e5e13ebd222120a8364b91440b *man/drugSensitivitySig.Rd
40edcf259f13bb8b180985866976fec8 *man/featureInfo-set.Rd
d435657fdde3ca5ea6ae9a7a00942f19 *man/featureInfo.Rd
5bf602a8a475b4a07f107b26da3cfdfa *man/featureNames.Rd
b2cb8447621ba0dc4b32b85b091bd1e5 *man/gwc.Rd
58d07070c06462090e137020e536da9e *man/intersectList.Rd
8a080770f13c9ed7910f9a3443a6e6e2 *man/intersectPSet.Rd
18a2803497b9f94a8eb9765c95ddc697 *man/mcc.Rd
b51c7c34788d163bd2f23b277f4e89c0 *man/molecularProfiles-set.Rd
79e6aad688e1cbd9caf201a327ecf505 *man/molecularProfiles.Rd
b6a44ae9e5948cf63bf2e984c2971fe0 *man/pSetName.Rd
36f07b3756f4d822e1c073b0c2402360 *man/pertNumber-set.Rd
1cb92bc1c7703befd87adf932d0e6012 *man/pertNumber.Rd
333753dd67b34014bba8642fa3a762c5 *man/phenoInfo-set.Rd
878109b730e0ff2293a0755284f15f44 *man/phenoInfo.Rd
f8f363dc98b62ee813e27d645015bf8e *man/sensNumber-set.Rd
f971bb9d1b767c550d2fe45084440e52 *man/sensNumber.Rd
8d5eee17c66bb989d66c7d06492000d2 *man/sensitivityInfo-set.Rd
fa082e5391c0b2699db46767d39dba8a *man/sensitivityInfo.Rd
b3e07f21ed55c52d96b6ad786bf12e89 *man/sensitivityMeasures.Rd
aab06ec9e19719a96aa981a46da39ac9 *man/sensitivityProfiles-set.Rd
01d6663eaf9dfab86ab7d0866f594a6d *man/sensitivityProfiles.Rd
36e09cf0572e4dee0927f8e403ecf958 *man/show-PharmacoSet-method.Rd
2f60ca7042e677970059c38af407456e *man/show-PharmacoSig-method.Rd
13869b5edbf5dd78514288e3404a4902 *man/showSigAnnot.Rd
36ae06e502d33bc75735256d64261ed3 *man/sub-PharmacoSet-method.Rd
4ce9ad558a681534bb5fbef799f1b2aa *man/subsetTo.Rd
769ff52ee19b279dc2724838dfe9dce0 *man/summarizeMolecularProfiles.Rd
a26875900556f7138425a0c556315e83 *man/summarizeSensitivityProfiles.Rd
feb74d7ef4baaea594a1c875b951bebc *man/unionList.Rd
813c5c1f3d2d316d8f62670794ceb7d0 *vignettes/CreatingPharmacoSet.Rnw
dca73f9655c6cb3327d0342cf25e5839 *vignettes/PharmacoGx.Rnw
0a1c145a5ef73983dbbf130e0ced5379 *vignettes/biblio.bib
b62b07b83dd4f275fd9eab4e7e9bd0fc *vignettes/pharmacogx.bib
