468d9b492b0f75714e6f7c392b91f701 *DESCRIPTION
1bd597a4713609793a7c321c1c4f97c6 *NAMESPACE
4ba01e7c2d015b45f2a13b080103922c *R/GWC.R
b0a18cff2ece56d6355de297cc3e9b22 *R/LogLogisticRegression.R
d7b04169a28b6afceaac4e69367a245a *R/PharmacoSetClass.R
7fc5311088e26947fd7f796d68920596 *R/callingWaterfall.R
e496092258e962d83be708d422f5febd *R/combineTest.R
92182218f6be9ace772c7358c6c9ce11 *R/computeAUC.R
30d9f0646236499db7f4a493a7a3bbcc *R/computeDrugSensitivity.R
212edfd43a7821452141d59d876b821c *R/computeIC50.R
704fea6b6e3d2db306e4106a194a85dd *R/connectivityScore.R
8a79cbad14a50cd227c530e87fed6208 *R/corWeighted.R
ca7678f1bc85d22ab5ee29a2451b7275 *R/datasets.R
762d5b92d0c984c4c452b236d35c8413 *R/distancePointLine.R
78db11f22fa6d6c63faf358ecc594b87 *R/distancePointSegment.R
afda89dc0e4155a18342f0cf40e7ed4d *R/downloadPSet.R
e85336078ca805befc4a9124728184d9 *R/downloadSignatures.R
12a5f782a99c648175acdf8ca2b36b04 *R/drugDoseResponseCurve.R
a707f6fd9a322ec7fc7dfe8ec298ae19 *R/drugPerturbationSig.R
ad956833d4796c078934c795cb7f1e6d *R/drugSensitivitySig.R
c3ce0daf64ce4be7f5b598ee43be14ec *R/geneDrugPerturbation.R
17d2bb22e1160a44d736d7e70d5a27c3 *R/geneDrugSensitivity.R
e9e01e629d51962b4a3a6f383c92bf82 *R/getRawSensitivityMatrix.R
28808c253915d9a19888fd79d275c9ba *R/intersectList.R
16a1b963be3112a94fcb3e53162afcf0 *R/intersectPSets.R
ca94518e49f687096deeffdec2d48421 *R/rankGeneDrugPerturbation.R
6ac68b81ee9da2808bab2786cf9ff490 *R/rankGeneDrugSensitivity.R
0f3bdc10c3959aa52985448c80c2e68c *R/signatureClass.R
10ff014033ae05f596bf73e6be9c40eb *R/stripWhiteSpace.R
d02efaa31147300a9259092e8c427752 *R/summarizeMolecularProfiles.R
011214ef7c9185a89e70b9aa9b511fa3 *R/summarizeSensitivityProfiles.R
1f10ff27e01a7f7ee6fa9f98fd1b06a4 *R/unionList.R
edcf760dd5ac1afe6aa704ac746b22ec *README
f4466c93c6c882157ffdc765b911f97d *build/vignette.rds
a3c5c8f060c043b2417ffbfc8e48a023 *data/CCLEsmall.rda
6923fe52a29450152ee9f51bac9d07a4 *data/CMAPsmall.rda
2a649c2d2f177bb68b6bab683ce9348b *data/GDSCsmall.rda
cc3c6f6048c0b30fc225de143c12e001 *data/HDAC_genes.rda
5bc7d378c90d6616d16d0cccca454353 *data/datalist
f407e1c5c77e062f1e565f12ef434fff *inst/CITATION
93207eddf25c7deb002aacc24664c692 *inst/doc/CreatingPharmacoSet.R
7e042f996f7c7fa9c8d508f2d4794e74 *inst/doc/CreatingPharmacoSet.Rnw
86f29b2cd0f746a5a268e8ac535ce184 *inst/doc/CreatingPharmacoSet.pdf
2a0139e4b5d733ac0e0d1719e4614ba1 *inst/doc/PharmacoGx.R
4b32434639f9eefba19ad8233b37be0f *inst/doc/PharmacoGx.Rnw
27cdc5cecf2aeb1a371f5dee37d11927 *inst/doc/PharmacoGx.pdf
ce0ead69148fbe8a31a8af0bf372481b *man/CCLEsmall.Rd
63bc5587bf141b425e6eef540d3ab82f *man/CMAPsmall.Rd
0f33d1bc9a400b38c3824f179671ce9c *man/GDSCsmall.Rd
2db92ae4a4e12104f736e9663cd3cc35 *man/GWC.Rd
c1bc70c5f4159b6621fe3a3dc73dfdbd *man/HDAC_genes.Rd
7bf8e7fa3ea478ad98a78c225a5f4a92 *man/LogLogisticRegression.Rd
766eb70a39413b638c97602313ab89b4 *man/PharmacoSet-class.Rd
b15065dddae50e2dfda837826b1b7538 *man/PharmacoSet.Rd
edf07b4bc09ced37c57cb79602f10c7f *man/availablePSets.Rd
3da26b01d50e2368ce20d91aea64f5a5 *man/cellInfo-set.Rd
82f5b39765546bfd630f0b5b49ff96a7 *man/cellInfo.Rd
41deb6e9f23f53cc21c2cee6b24a74cf *man/cellNames-set.Rd
78a78ec5f21a0d69bf6157da7c0542fe *man/cellNames.Rd
03f699f57ed898dd5dac122700f31b10 *man/checkPSetStructure.Rd
d06eea5e36b83208918ec31c04d4fd91 *man/computeAUC.Rd
ddf0c44480d654d8ada661f379473866 *man/computeIC50.Rd
16024730c8a6f5b29512e15c5ec5ea50 *man/connectivityScore.Rd
cb3208411e95d1d3c3a96f0466fe51aa *man/dateCreated.Rd
ef5f7819219e62d443aaa30a759237d8 *man/downloadPSet.Rd
12f54ab3be27cde8b8ba4d87f2073312 *man/downloadPertSig.Rd
1041663329115e758d45f943045ca64e *man/drugDoseResponseCurve.Rd
6c31820f8a8ae5f5f3d9099f48de2d02 *man/drugInfo-set.Rd
4682d85d183bf373e2519775c0506fd4 *man/drugInfo.Rd
e4542d879d200c0275358f91b90ca77a *man/drugNames-set.Rd
440214ee9770d1c3517013fa952b545a *man/drugNames.Rd
32b38373336aee28f148fb9d07760031 *man/drugPerturbationSig.Rd
817e54e4c02ce5e5df3c85286d0a6bfc *man/drugSensitivitySig.Rd
c7d285717d104f07e893dd5b1da0f166 *man/featureInfo-set.Rd
4dff8be8cbdfe9f1aab579b55b4b73a2 *man/featureInfo.Rd
8bfc66f350cbfa1277380f5eeead03b9 *man/featureNames.Rd
60bc9a3ef18e038ecf69cd32dd56171a *man/intersectList.Rd
8f0aec5f9643f11c4783460a1d9e5a0f *man/intersectPSet.Rd
176e2487c84c10be0dd4e8e828205bac *man/molecularProfiles-set.Rd
a451faed39660a81a120a9fc2c4605e8 *man/molecularProfiles.Rd
fff5f711742cf34676a62827770ee560 *man/pSetName.Rd
130bdcf2faa71804554dc82c734b341c *man/pertNumber-set.Rd
c49271974e84b34b308cbdd4034fe730 *man/pertNumber.Rd
61d3e2177a3b5ecd071a0557a27495d9 *man/phenoInfo-set.Rd
171535c0dfd3393cf71f07b21ea51e22 *man/phenoInfo.Rd
a7ab09b3f118c5ff556bfdee48b9c6eb *man/sensNumber-set.Rd
49cb7391d881d5d7f5f49eacfff92b7d *man/sensNumber.Rd
0aba37e235ed44221a10535c7716f3d7 *man/sensitivityInfo-set.Rd
1b54237eb48abda52cadea8bcbabc741 *man/sensitivityInfo.Rd
ec1808022eec306c5a29545be8c06cb6 *man/sensitivityMeasures.Rd
a63a058c80a2fc634e03fb23459b48b3 *man/sensitivityProfiles-set.Rd
82cbc2b282e85febf7d04522ff6bc133 *man/sensitivityProfiles.Rd
4930a4f1af52f578ef2240e6c4f08df3 *man/show-PharmacoSet-method.Rd
3ef97409b0ae027eb5b8dcb0ff92d42b *man/show-PharmacoSig-method.Rd
ffda236e92b4e0dde23a16c66c61479a *man/showSigAnnot.Rd
cd6b81abd508e8d02d542d2319076202 *man/sub-PharmacoSet-method.Rd
9d55023851d4c3ab1dee6b3cc1c992f4 *man/subsetTo.Rd
52c2e103079578aa870692529a3ec0a4 *man/summarizeMolecularProfiles.Rd
3803b0130c2e7bfef5524d4398bd79a4 *man/summarizeSensitivityProfiles.Rd
457364fbacccbf46552de93a86e7d919 *man/unionList.Rd
59af8835692df3a4717f32869615bbca *vignettes/CreatingPharmacoSet-concordance.tex
7e042f996f7c7fa9c8d508f2d4794e74 *vignettes/CreatingPharmacoSet.Rnw
31bd0238b7785475cfebdcaeaf8cda37 *vignettes/CreatingPharmacoSet.tex
4b32434639f9eefba19ad8233b37be0f *vignettes/PharmacoGx.Rnw
0a1c145a5ef73983dbbf130e0ced5379 *vignettes/biblio.bib
b62b07b83dd4f275fd9eab4e7e9bd0fc *vignettes/pharmacogx.bib
