6f0efcf5b3c346f8f8442fd21516e39b *DESCRIPTION
2886425a963fd06751e264134ca1e3bb *NAMESPACE
d697668a8c8ad9ce87e905835398e5b4 *R/data.R
9e9b2012f8cd0f5a0b2700ed123f6045 *R/functions_PCA-PAM50.R
6b8c389cc495c3d306f8bce4fb3f3a1a *R/zzz.R
6253375a8d427f4fc4a9b0be39b14b49 *README
4084aaeb7118b4a1d7f4f4458cb84868 *build/vignette.rds
303982052f926bf8e2c1ea9d0bf7ca6d *inst/CITATION
29a9012941a6bcb26bf0fb4382c5dd75 *inst/LICENSE.md
378e1255d15d637cebbc76cb046adfd7 *inst/PAM50/README.txt
7ff410041b9746cf8fdb9a6a875a00bc *inst/PAM50/bioclassifier_R/220arrays_nonUBCcommon+12normal_50g.txt
72db7de5c2e7419e7712f536ba3b615b *inst/PAM50/bioclassifier_R/PAM50_agilentProbes.xlsx
3baa975cfc429523190a919c2afbe5bd *inst/PAM50/bioclassifier_R/RNASeq52_10ERp10ERn.txt
2d50e64ab80b9b05ac7df2856cfab9b1 *inst/PAM50/bioclassifier_R/mdns_METABRIC989IHC_09June18.txt
5d064d972a1df6bf50d9cfb8a5de9905 *inst/PAM50/bioclassifier_R/mdns_Meabric989v1pam_09June18.txt
c1745cd44490cf05653b9ac92ba92eb7 *inst/PAM50/bioclassifier_R/mdns_Metabric989PC1IHC_09June18.txt
7fe91f0e7b3e307a9e8b3eb15b295ec3 *inst/PAM50/bioclassifier_R/mdns_TCGA712IHC_09May18.txt
538c70bf19d4a270535c94b8d07ffb3d *inst/PAM50/bioclassifier_R/mdns_TCGA712PC1IHC_09May18.txt
6c91e0a8fe923ed3e74fef9e7ceadf8f *inst/PAM50/bioclassifier_R/mdns_TCGA712v1pam_09May18.txt
1693fdab19cfe4822a709a3519ce7ee1 *inst/PAM50/bioclassifier_R/mdns_TEST_IHC.txt
91e753c497e70666c127657976fee448 *inst/PAM50/bioclassifier_R/mdns_TEST_PC1IHC.txt
b97ad4e62bd6a2214de3d819a5df88e0 *inst/PAM50/bioclassifier_R/mdns_TEST_v1pam.txt
b1d666460df37572420706d8bfcf13a8 *inst/PAM50/bioclassifier_R/mediansPerDataset_09May18.txt
fb809e6653d7f7457b2beda434062c87 *inst/PAM50/bioclassifier_R/mediansPerDataset_15Nov17.txt
38ad81cbc4da2e52293792dfbe166100 *inst/PAM50/bioclassifier_R/mediansPerDataset_23May17.txt
538c70bf19d4a270535c94b8d07ffb3d *inst/PAM50/bioclassifier_R/mediansPerDataset_PC1ihc_09May18.txt
ea95631a0c042eba676c81384fd6c1c4 *inst/PAM50/bioclassifier_R/mediansPerDataset_v17.txt
7f0496fb756b4c0f2bde5ab2f0b28756 *inst/PAM50/bioclassifier_R/mediansPerDataset_v17a.txt
25ba512a6a07c69319429712e5d93291 *inst/PAM50/bioclassifier_R/mediansPerDataset_v18.txt
292ccfe295d434b93b668d6042da6d8d *inst/PAM50/bioclassifier_R/mediansPerDataset_v2.txt
a1c713c24949892527a6710c629368a3 *inst/PAM50/bioclassifier_R/mediansPerDataset_v21.txt
dec6977877f279833bbd9762250300b5 *inst/PAM50/bioclassifier_R/mediansPerDataset_v22.txt
b527194fc083aa3fbf99fe4e89e45265 *inst/PAM50/bioclassifier_R/mediansPerDataset_v3.txt
425abbbecfe36d6c8067cb8142275fd6 *inst/PAM50/bioclassifier_R/mediansPerDataset_v4.txt
50f7908f6d59e02a122dc1a632f22858 *inst/PAM50/bioclassifier_R/mediansPerDataset_v5.txt
d4cca3d7b76dee19bca6879ef1e760ed *inst/PAM50/bioclassifier_R/mediansPerDataset_v6.txt
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559f03d81955aa5eb032dab3adabc90e *inst/PAM50/bioclassifier_R/mediansPerDataset_v8.txt
ebaec3510dba2e958bad1e21a46cb211 *inst/PAM50/bioclassifier_R/mediansPerDataset_v9.txt
9808cee0d0db68c137d29b5c0d25457b *inst/PAM50/bioclassifier_R/pam50_annotation.txt
498ea6e163ac384e8986e3260c8786aa *inst/PAM50/bioclassifier_R/pam50_centroids.txt
39fea55076c1a36850957636a5ac0c40 *inst/PAM50/bioclassifier_R/pam50_centroids_PNmdfd.txt
7958998620ea942a113b0eca8e3423b0 *inst/PAM50/bioclassifier_R/subtypePrediction_distributed.R
fc6edba31e26b19da1c9e7cc5b966ff0 *inst/PAM50/bioclassifier_R/subtypePrediction_distributed_PNmodified.R
67b707ac80939bcccde1fa5ec5558dce *inst/PAM50/bioclassifier_R/subtypePrediction_functions.R
023aca0cadf3c939fb701ff4508db7a7 *inst/PAM50/bioclassifier_R/subtypePrediction_functions_PNmodified.R
2f5f999e44dd280ab4a2bd011c8bef82 *inst/PAM50/bioclassifier_example/bioclassifier_subtypeAssignment.R
f9037c2d3fafa12b23d431dafb461925 *inst/PAM50/bioclassifier_example/sampleInputFile_200subjects.txt
0d7035bc2d74cafa7403ea107c0540b1 *inst/PAM50/bioclassifier_example/sampleOutput/predictionScores_pam50RankCorrelation_1.pdf
75ccf62e830b27b5c4a78c755f20402e *inst/PAM50/bioclassifier_example/sampleOutput/predictionScores_pam50RankCorrelation_2.pdf
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77d9da597b7cb72b71b47b7099496b06 *inst/PAM50/bioclassifier_example/sampleOutput/sampleInputFile_PAM50_normalized_heatmap.cdt
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2663d54f9d8648f83e9087778bb28cbd *inst/PAM50/bioclassifier_example/sampleOutput/sampleInputFile_pam50scores.txt
4c348405745b7a0a23c8d197f26f3c61 *inst/doc/PCAPAM50_vignette.R
c91ed26c5190dd85ff86b14f0f916b96 *inst/doc/PCAPAM50_vignette.Rmd
f11c4c38a1ea9c8e31d781b8f8ef8519 *inst/doc/PCAPAM50_vignette.html
f74c8a8947e48d743bb3d22a134b529e *inst/extdata/Sample_IHC_PAM_Mat.Rdat
006f39466a4e9c43bc7161fb0d72de51 *inst/extdata/TCGA.712BC_IHC_PAM-Mat.Rdat
05d45c35e663117cc64688b21a6cb9e6 *inst/functions_PCA-PAM50.R
0aabff66370c8e9f64c82ad05149ef4a *man/makeCalls.PC1ihc.Rd
cff1d0592fbf3d0ed3057b748eb40aed *man/makeCalls.ihc.Rd
a877a69473922ba0df4e442795d39903 *man/makeCalls.v1PAM.Rd
aa74875e91251c841f502cd9619dd985 *man/my.plotPCA.Rd
4e72fb2af75fb6957368c0791e722aa5 *tests/testthat.R
b3e8f6283ee9543d853792b82980153e *tests/testthat/test-functions_PCA-PAM50.R
c91ed26c5190dd85ff86b14f0f916b96 *vignettes/PCAPAM50_vignette.Rmd
9d2bc8ac6b4f97caa2e4711a682f55d4 *vignettes/Plots/Ihc.Mdns_PAM50_normalized_heatmap.pdf
64be3e466d81a33213d9d0749dd8be31 *vignettes/Plots/PC1_misclassified_cases.png
5cab799d3906ab0f4cefc8355e67fa13 *vignettes/Plots/PC1ihc.Mdns_PAM50_normalized_heatmap.pdf
80f32eece49ac547e1064259fa131762 *vignettes/Plots/PCAPAM50.Mdns_PAM50_normalized_heatmap.pdf
