7799cd42f0f526f344db5827cd33b0ac *ChangeLog
6712646080079aa89270f0a78d88863f *DESCRIPTION
e14372b8866fa3ef3e6bebe9ccfa86e0 *NAMESPACE
20e054497eb8e67d78b069a388a637b3 *R/OutbreakTools.R
0695d95ade702024b64f8bd1c983e3d1 *R/annotatedTreeReader.R
d606c1301a254c19d5302347a0b02686 *R/auxClasses.R
764015498b8e7e51d4c1735d5797ca2d *R/dna2uniqSequences.R
84d17dfe35a04861c5bead6c380c1b9f *R/generics.R
3d84b893c3a8c4dddb23bca499f481f7 *R/get.incidence.R
3ae2230b1e68b272a21f5e227f31bdaf *R/importFromJSON.R
26ca02862f80f365ac77d7f18ab9c1dd *R/make.attributes.R
0eda1b77762e80a4cd783c1fb37069ba *R/make.phylo.R
5e01de0f3951e49cd2d011f625cbfb3f *R/obkContacts.R
7a5886de8d9fc1fe4bada249da67a5c4 *R/obkData.R
1a326c0a1098b670eaeba6e19ef0beac *R/obkData_Accessors.R
13077897480efb020fe969d4692c06c1 *R/obkData_basics.R
a34cf3651144fdee12996b97359f794b *R/obkSequences.R
03c4967464a40a3f26149ac6bae97c99 *R/phylo2ggphy.R
c2c89c1322a546c250565154a825c21b *R/plot.R
00d4b187739837fe79271211b3289564 *R/plotGeo.R
887f1e91475818f7abb888a28ad3de67 *R/plotIndividualTimeline.R
ec8e1ceb672fe65fb05019ab741b7ad4 *R/plotggMST.R
906f3c7032b89c641b55025aef733831 *R/plotggphy.R
0987689445f8162e9c2da03433a81c4e *R/simuEpi.R
a891901f9fdf7c592cf900529f93bfb8 *R/subset.R
49bba3246fcdd5c48770804ad6d0f3c9 *R/uniqSequences.R
46fda59d7a0a5c7c9c49bcb1034ae1a2 *R/utils.R
37bdba9a704a2a525f8764e6a4fccdeb *R/zzz.R
72a3a699aad5b614233e407b5797d9ef *build/vignette.rds
d62f0c7f2a7e83ab0a4133d9393adbaf *data/FluH1N1pdm2009.RData
c1ea0d95b6e0ec0af5baf1cf26781d6e *data/HorseFlu.RData
8c8551ec4004237639c72bd3c82b5f6f *data/HorseFluRaw.RData
3e0ce624f4440d34e33a1065bcf87944 *data/ToyOutbreak.RData
5ebb80c7f5b4602283e4c6b75fb4cb23 *data/ToyOutbreakRaw.RData
421555c3d5d47b14b2b0e1d6e59466f9 *inst/doc/OutbreakTools.R
4f63ee56890694d26fa89c553d9be2bf *inst/doc/OutbreakTools.Rnw
e9ffa8962d0ead8c92eba0fdcf5df7c0 *inst/doc/OutbreakTools.pdf
1470607bdf124ecb2a9737e6eff07ca8 *inst/files/BEAST-expl.nex
b063b117a96958e3f96c72724609eca2 *man/FluH1N1pdm2009.Rd
657b5b2a94feea3299516e0c1d9b5f77 *man/HorseFlu.Rd
a294a52f8e31d68c5ebf1b7ec65e42e9 *man/HorseFluRaw.Rd
16fd96c35654dabd49c5113d3378d500 *man/OutbreakTools.package.Rd
dfe3348f90d7ce2b9ca9a61acc453025 *man/ToyOutbreak.Rd
26b55ab92e71192263f852236c76860d *man/ToyOutbreakRaw.Rd
41c11d9b4950c56d136a17cd18e72f2e *man/annotatedTreeReader.Rd
125ff8019480c150de866dc13ae6fd1e *man/auxClasses.Rd
f220b3a67172fc7d278a1321ad000ca6 *man/dna2uniqSequences.Rd
8e090c17fdd2fd7d1b0065fe6a786b65 *man/get.data.Rd
1f35bfec8d991e15780f7b92ffdd5160 *man/get.dates.Rd
ca62edbf5244a771d68a9ef3d87ded2b *man/get.incidence.Rd
aa800c2322be67d08fc307acc8c23d92 *man/get.individuals.Rd
d150713754c80e9a56afeec9b5c52880 *man/importFromJSON.Rd
3373beda0892ae4e5883d1d2e33885a0 *man/make.attributes.Rd
6b2d913154904e264b8d5f1687739587 *man/make.phylo.Rd
a9d1309cc5391955f78b62b4976c0ee8 *man/obkContacts.Rd
63b39f3c3d0da9a80899fc3dfa65e20c *man/obkData.Rd
fc5426844a6e81d3ca23e178249b7d3b *man/obkDataPlot.Rd
da7e4eb5c98f68d3464a98c4a905c712 *man/obkSequences.Rd
01caee3e5b631405ad752a7f89ef5dd0 *man/phylo2ggphy.Rd
2ab93d85684ddc463415391997840d87 *man/phylofromtranstree.Rd
d7ed6790669aef897a2b43f3f9360e38 *man/plotEpi.Rd
80a30aa2a34501c25675cbfbea2de66b *man/plotGeo.Rd
b23317e3f1a74f62f2810032985ca475 *man/plotIndividualTimeline.Rd
ebdd01419d6c9fe1a8330319f27a0133 *man/plotggMST.Rd
597a9119977bff837fcafdef2bbab96d *man/plotggphy.Rd
a01be53e77d67ecf41a82189a8ea44ef *man/simuEpi.Rd
7dd0765a52cea6e1cb64c152afa079d0 *man/subset.Rd
2351185c150a7c2705a69705877ce8ff *man/uniqSequences.Rd
4f63ee56890694d26fa89c553d9be2bf *vignettes/OutbreakTools.Rnw
