# Generated by roxygen2: do not edit by hand

export("%$%")
export("%<>%")
export("%>%")
export(addContigProperty)
export(addKOProperty)
export(adjacentPairs)
export(allTrios)
export(annotateContigs.taxonomy)
export(blatting)
export(buildTree)
export(connect)
export(contigInfo)
export(contractMetab)
export(cpdname)
export(dbquery)
export(dynPlots)
export(dynamicThreshold)
export(extractFromPath)
export(findHomology)
export(findNextKO)
export(findPython)
export(findSeeds)
export(findTrios)
export(findV)
export(findtype)
export(grepReads)
export(grepgraph)
export(grepgraph.cpd)
export(ig2ggplot)
export(igraph2gexf)
export(index)
export(ko2path)
export(koname)
export(ksCal)
export(lca)
export(listquery)
export(lookupTable)
export(make.data.frame)
export(map)
export(mapContig)
export(mapReads2MDR)
export(mappingInfo)
export(mdrRanges)
export(path2kingdom)
export(path2ko)
export(pathways)
export(prettifyGraph)
export(readStatusReader)
export(simulated)
export(taxnam.sql)
export(taxname)
import(ggplot2)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,countOverlaps)
importFrom(GenomicRanges,seqnames)
importFrom(RCurl,getURL)
importFrom(RJSONIO,fromJSON)
importFrom(ShortRead,id)
importFrom(ShortRead,readFasta)
importFrom(ShortRead,readFastq)
importFrom(ShortRead,sread)
importFrom(ShortRead,writeFasta)
importFrom(base64enc,base64encode)
importFrom(data.table,as.data.table)
importFrom(dplyr,anti_join)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,do)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,last)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,tbl_df)
importFrom(dplyr,ungroup)
importFrom(forcats,fct_relevel)
importFrom(forcats,fct_rev)
importFrom(future,"%plan%")
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(gridExtra,grid.arrange)
importFrom(httr,GET)
importFrom(httr,write_disk)
importFrom(igraph,"%->%")
importFrom(igraph,V)
importFrom(igraph,as_ids)
importFrom(igraph,clusters)
importFrom(igraph,get.adjacency)
importFrom(igraph,get.edgelist)
importFrom(igraph,graph.data.frame)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,layout.fruchterman.reingold)
importFrom(igraph,layout.norm)
importFrom(igraph,membership)
importFrom(igraph,neighborhood)
importFrom(igraph,shortest_paths)
importFrom(igraph,simplify)
importFrom(igraph,vcount)
importFrom(lubridate,now)
importFrom(magrittr,"%$%")
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,"%T>%")
importFrom(purrr,map)
importFrom(purrr,map_df)
importFrom(stats,"cutree")
importFrom(stats,"dist")
importFrom(stats,"hclust")
importFrom(stats,complete.cases)
importFrom(stats,kmeans)
importFrom(stats,ks.test)
importFrom(stats,median)
importFrom(stats,setNames)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
importFrom(zoo,rollapply)
