afd3c2941728abd430a079088e451ab0 *DESCRIPTION
2a166bf82668cddeefeb27eb207e0f3d *NAMESPACE
786883dcfe48ec572da30908d144de20 *R/DataHandling.R
d0e0a50d60116b8bbc679ee6c556ef3a *R/MAP.R
a3259fa9359d3d85594f396c69659c48 *R/MAP.genes.R
0e8aab39b7351a87b179e40e7e1eee61 *R/MAPmatrix.R
be5440663a3756dd5bf46b099fe04a61 *R/MAPsig1.R
841938f73ad63a6b525b1c2ae14fdb70 *R/MAPsig2.R
613c60161adb73b564ccccc2ec3d3f20 *R/MCtest.R
355392ca776d7b19a20591a4e97432ff *R/METRADISC.R
4d0a7f96914b93c3ea911f0e42a44ef1 *R/MetaArrayclass2.r
3cf6c2ebd174a4009d506345fc3dce95 *R/SOGL_final_new.R
fdbe1568e9878695c302e8d52995c190 *R/T.select.R
3ae84f0d1850a07552725d8b4271e2dd *R/VennMap.R
8e087d9291c53136f490547080cc3455 *R/Wrappers.R
71137ece3e84bb58e4e35b48ea609ddb *R/Z.R
eef727ce1411030000f4315bf1b03589 *R/clinical.sum.R
f8489f3e22ddc606543b82a849641b98 *R/compute.RQ.R
89d52192df61023d9bce059cbd265e9a *R/conting.tab.R
e4b307490d753d246c2d93b8faeabc0c *R/cv.filter.R
3a054f41f2b7fd2b7ebeb15488fc68f6 *R/dataZnew.R
5eb45fcd3f3f1164c89daebc3437bab2 *R/entitybuild2.R
95309ad3ef6f83e0c14c2106516f8155 *R/gene.list.R
b83f32a8d904a7cf9b7a1af15a20b212 *R/join.DEG.R
5d805878fec6458dd37c248ac593e43b *R/join.results.R
8763069f446171ea94a0121773d9871c *R/make.matrix.R
e72d48fd45c09ecbd7b1122734a5072e *R/metagene.R
5e214f8305fef8f03ee4dec9ba136ade *R/metaheat.R
9a2232cfd1f32ef4d2fe6492a15790fe *R/metaheat2.R
1eda9634e53126c7274d2c97a223e526 *R/metalist.to.matrix.R
39483bacdaf6a4783db4bd2305ba8e7f *R/multExpFDR.R
6fab27a694943bed7019738320ce1056 *R/patternMatch.R
d3a3169e701f1fdc77e476cfc066d7bc *R/patternMatch.strong.R
6da7bf7c99518f02adad8999eb26775d *R/patternToString.R
674e3e4a6f23dd11d6084453c226e408 *R/patternmatrix.R
b70d011f8e7627111a6abb4101504e8c *R/plot.ES.R
50a50a1c4ad34ce0451ed722b5836aca *R/plot.QvsChi.R
83dacf4d9aae0efd451f77b073159b1b *R/plot.SOGLresult.R
b5ec97546513deb7a27a6a8c3ec85897 *R/plot.clinical.R
d14bec3690419f3d182986b8f8304c6a *R/plotgene.r
5b051a6aa933d12099845a7e3cd4aed8 *R/plotgene2.R
4cdecd02a6aa42d4ca1b95454d7690a0 *R/probs.to.matrix.R
4a8591a5667ceec756385bbf1073e2ef *R/rank.genes.R
67e9314df0183c3ba33e5d861db4a00e *R/rank.genes.adv.R
53ea67bb577372ea424540a70fa16f7d *R/ratio.R
96461f1b5653cac99000cc89781daee9 *R/sd.filter.R
6861733462776a3e636a8b590fc400d9 *R/zScoreFDR.R
4d9735dc3ad98b5535c0babcb5127fd7 *R/zScorePermuted.R
a3dad7106ef721f388086b4d30228c52 *R/zScores.R
9aed2b6e4882c8ea466808814e5f4802 *data/ColonData.RData
65dcbdc860c2e5d367a3b50ee1681b7c *inst/doc/MAMA.pdf
c07b1bd9daf330db986d4f7e2daa3ed0 *inst/doc/MAMA.rnw
b48cca83c1a21175729f5bdb4bbe7409 *man/ColonData.Rd
87328b93c180ed1843bd9f43249862ac *man/ES.GeneMeta.Rd
f3d95049498ac575c266a7c7ea538eb7 *man/MAP.Matches.Rd
ae02f51357282c27a2e30863c81d5112 *man/MAP.genes.Rd
7d4cc1edab66d8d80b81dabadca22cbc *man/MAPmatrix.Rd
9cd70d28ac47854770924f286adb4b36 *man/MAPsig1.Rd
cf156487e74c164b9b23ab1a8d747245 *man/MAPsig2.Rd
784d45b11929bc52af6e485749282c0d *man/MCtest.Rd
7bceb30f575174df7f9679f75436c61c *man/METRADISC.Rd
a902931ee86335833ac566a928d3512c *man/MetaArray.Rd
8148075264d35da57c878c5461cd7267 *man/RandomScore.Rd
67fdb6fce3da8ca9ca592894200c5bf0 *man/RankProduct.Rd
6f47f7e109c72ab6666dfe4495cc1f1a *man/T.select.Rd
2359eee6e5a7c1815076edd84643a139 *man/TSP.Rd
4cedba1f19cc790dec65c58c6e06c5cb *man/VennMapper.Rd
87b31cd419b423ea861f067d34f0aae0 *man/Z.Rd
c1e3489ab55f094d58be400efcbfc64d *man/clinical.sum.Rd
2bfd4fe3b327be988eeda41711e455dc *man/colIntersect.Rd
2897e44fa1023a4a04151f9caa9cb636 *man/commonGenes.Rd
6e2b23d5476ab56ffb71b0546bd2e16f *man/compute.RQ.Rd
a6e22cc243aad5bd348280b52b034f5f *man/computeAlpha.Rd
159f408287bbda36140ae9a8b0697698 *man/computeOrdering.Rd
a4485006276617103593b1797f981752 *man/conting.tab.Rd
278dee71b4452e96da36336c277b1750 *man/cv.filter.Rd
9bf74554121e4028bd7d3df37b959fd8 *man/entitybuild2.Rd
33183626198d265f755e1517d876f3e2 *man/flip.Rd
7d9f7ce4f2778abbfcf38ec1148475e4 *man/fold.change.Rd
b40f3b37a33bde0786111e4294272300 *man/gene.list.Rd
3f0b23ef1ba73d2eefee3d96b27ff197 *man/gene.select.FC.Rd
fad2085b0e4375ebdbe12c5b309aa29f *man/join.DEG.Rd
faff05a23fb9e12c5378ee097d0f9a7e *man/join.results.Rd
71513ea815419da262026ac781b097f9 *man/make.matrix.Rd
dcf0bc2b68e289d32bf497de710ec391 *man/mergeExprs2.rd
af35a47314c7bb1e9c6202a7de96a049 *man/mergedata.Rd
23aec9825beb7cba82427f1930558939 *man/meta.test.Rd
7c0cc987b349ba6db29590bcb866180a *man/metaMA.Rd
f69e50a0215f4bdc26aea609e67f2ffb *man/metagene.Rd
e0b8cfc6e1397500205d9c12486185e2 *man/metaheat.Rd
9c7cf7fe1849d628c14b7bdf7ab34bfb *man/metaheat2.Rd
b21ea1fdc3b0aa61e1850351811f945a *man/metalist.to.matrix.Rd
cde50ea4bfbc76e9b600462278d6622c *man/patternMatch.Rd
06553e98f2c333869ffc6a90fa0240f8 *man/patternMatch.strong.Rd
3a297ea87c2a29e340e5d29f5658601b *man/patternToString.Rd
1fe7c567f666f21026375e7a2b5adb06 *man/patternmatrix.Rd
1772298c9a36be9669026ffde2302d6c *man/performSOGL.Rd
99152b199429282717ae417d52bddfff *man/plot.SOGLresult.Rd
cf29cf5341727ea67d9e7c40d3ae7c7e *man/plotES.Rd
d1987d423ff03c96c21c195575f5808c *man/plotQvsChi.Rd
86f90b1d94e58572e88e6c746c9186b9 *man/plotgene.Rd
d79c9f7c4a55bfbaf469b3457f17987c *man/plotpattern.Rd
2766d1f61e0702c5bbe0c841fcd0c784 *man/posterior.mean.rd
ad5dee411dedafea58e99d3524f7929c *man/prelimScore.Rd
b92906365a3d3c9a00b0aad17e881068 *man/prepareData.Rd
ae9a8369e43b4bd82f3f15ddcd4612d7 *man/preparePermutations.Rd
3a1e49afb0c40929aa8bdee8d5225aa9 *man/probs.to.matrix.Rd
14db9514bf06330bf2381609f8fa2f1d *man/rank.genes.Rd
69a9c4d8d76f0f736ab28dc326fae7bf *man/rank.genes.adv.Rd
2e36060152237d5a327fb1cf22e23c8b *man/ratio.Rd
d1c0a184fe63fededa400f2926264c02 *man/sd.filter.Rd
9c289b1036767ee9c446020db347d5b1 *man/selectAlpha.Rd
23b1439784186f4edf68f6cf65692c50 *man/selectClass.Rd
c4c598459d4c6acceed7525cecd7c356 *man/selectGenes.Rd
820aec016d00c30be30032bc76f56e6b *man/sigScore.Rd
9ff4d7ca71b301df66dc7f2d00f6756d *man/test.group.shuffle.Rd
ec880ed0debeac3c262e7b5cddfd41f8 *man/zScores.Rd
5ee27d736afa67dfb9653942f664deed *vig_short/MAMA_short.rnw
c07b1bd9daf330db986d4f7e2daa3ed0 *vignettes/MAMA.rnw
231934edd6e91e5d19bd5cff16f2cdbd *vignettes/fancyvrb.sty
6a28d0c1c7ded12d0be47a917d308624 *vignettes/inconsolata.sty
4218031f2d3d06b74984dc52aa76f07f *vignettes/upquote.sty
