b725ee6dd3d6a22ea2f6371cd77b83c2 *DESCRIPTION
4153e71cd0e2579023584758e5e95a5b *LICENSE
f4be745bd6d1c37606f1ac30dd6a5d7f *NAMESPACE
a32bd5171f2afaa0d8678c0e83855468 *NEWS.md
722039465c445a8c609fefb54e81a9bf *R/AnalyzeOrthoMCL.R
93d32a26b66dc7f83f596b10704d6c9e *R/CalculatePrincipalCoordinates.R
f1e68a5be67b519c947274d9dbc91e07 *R/FormatAfterOrtho.R
8d95b2cc5facf1a0b26a35dbae372329 *R/FormatMCLFastas.R
1b30d981ad780de86a545478a76e0eec *R/JoinRepSeq.R
5a582104862fe561732f185f09370d0b *R/PrintOGSeqs.R
09f91d510c0775d83695ec92cd3595de *R/RASTtoGBK.R
e2763ceb531b869bff1ae19477c15d9c *R/SurvAppendMatrix.R
91a4537354234d5d3257692d66452ac1 *R/WriteMCL.R
629abd73953bd022e1d2a24aea11bbb0 *R/doc.R
bcd90d5d0486c1820b1aa2264a8e1eb4 *R/graphics.R
9022bc4b262849bc5127de12d3de0216 *README.md
ed1683b2af8ec03cd752def535919c73 *build/vignette.rds
dad53b150eb75ea550202a0eec68657a *data/after_ortho_format.rda
ec1601bbb7f4fd81a5ac7108597aab29 *data/after_ortho_format_grps.rda
56404717890f525eaee4fa0a78b26d61 *data/joined_mtrx.rda
96c26e588c381fbe6545753277f74bf2 *data/joined_mtrx_grps.rda
3dca7414701736ddba0e5b6ee465220a *data/mcl_mtrx.rda
7c2cb51e73a79cec9cbdb1c542a6a577 *data/mcl_mtrx_grps.rda
c60700663fa9c96df2e0e95b31c78e32 *data/pheno_data.rda
45da42bcec0eec0480286cbff6ad4d9e *data/starv_pheno_data.rda
96df14e766eaf601fbe763499219a2c3 *inst/doc/using_mag.R
9277036cae8ccc163ba6bc4b2347a687 *inst/doc/using_mag.Rmd
5afb88b11771fcd2cd9ea97df30d61e6 *inst/doc/using_mag.html
dd8b0081417995e791b677fb8eb07847 *inst/extdata/RASTtoGBK/lfrc.fasta
46c789bab44932d7ac9a6c4bb3e02a8c *inst/extdata/RASTtoGBK/lfrc_lookup.csv
55da80470bf5768a8038e5067a5bcac9 *inst/extdata/RASTtoGBK/lfrc_out.fasta
27b2008e36ca4fd785bc97c7fea2b453 *inst/extdata/fasta_dir/MCLformatted_all.fasta
bda9c73cf0014d32756f4c0b3c667ad5 *inst/extdata/fasta_dir/aace.fasta
f354575f10aef3d7d1bc5976d97da975 *inst/extdata/fasta_dir/apap.fasta
60ae714d36d9a9e861c9909c4adc7f8d *inst/extdata/fasta_dir/apas.fasta
05189937d40e8b0f52dbbceaa60856c3 *inst/extdata/fasta_dir/atro.fasta
3af4570dea812fc6f382e0fec03a497c *inst/extdata/fasta_dir/bsub.fasta
f2c30aa4d895619dd4e694b292e95fb2 *inst/extdata/fasta_dir/dmos.fasta
a5328fd0c069102ad2b6132009db219d *inst/extdata/fasta_dir/ecol.fasta
c8b98acb06b787f63b8018855a521a15 *inst/extdata/fasta_dir/efao.fasta
1e30a07475af9252b6f9ec52184d718e *inst/extdata/fasta_dir/efav.fasta
fa5f7012990d03e272bdcae81a0dc89b *inst/extdata/fasta_dir/ehor.fasta
c9ad6702dcd775323df222602c860ff8 *inst/extdata/fasta_dir/geur.fasta
68960dd8c52aa64791303b875c660244 *inst/extdata/fasta_dir/gfra.fasta
7a0f3cf208c41933274561a33ef6e7d9 *inst/extdata/fasta_dir/ghan.fasta
6d52327ca9da89c18546027f4ece4d14 *inst/extdata/fasta_dir/gobo.fasta
db9296406d5cf8bae11b290a500587e3 *inst/extdata/fasta_dir/gxyl.fasta
e1711f365235862531ddd3398c50de5f *inst/extdata/fasta_dir/lani.fasta
c7a4c5fa02e2f4b92aca032eea569863 *inst/extdata/fasta_dir/lbre.fasta
9ffc9c2c6740caf85f952b8777febdd4 *inst/extdata/fasta_dir/lbuc.fasta
c40237dc27d127e7615a7521ce22cab9 *inst/extdata/fasta_dir/lcas.fasta
a2128a34b117814bdad1befe0e3ba088 *inst/extdata/fasta_dir/lfal.fasta
4ae51ea8316564f7790e165793d2b9cd *inst/extdata/fasta_dir/lfer.fasta
b118c8616ec5acedfc564b2dda544eae *inst/extdata/fasta_dir/lfru.fasta
f60306264842412cb51f3d856cf2369b *inst/extdata/fasta_dir/lgas.fasta
a6dadf01412f75ec46dc7623878c37c3 *inst/extdata/fasta_dir/llac.fasta
1db6b6aed44687c157e6df5e79e5bac5 *inst/extdata/fasta_dir/lmai.fasta
8a9fa53607fbf6a1fc600265faa96806 *inst/extdata/fasta_dir/lmal.fasta
13b2215258726e0fc7fbab6ca9b59c3d *inst/extdata/fasta_dir/lpla.fasta
1c763c3071672f9e96cd4ae3975d4ca6 *inst/extdata/fasta_dir/lrha.fasta
609a675da30d454905cf91e98c18378c *inst/extdata/fasta_dir/lver.fasta
ab9a7aa776c7f163cca1e2e4a393f0e5 *inst/extdata/fasta_dir/pbur.fasta
c462e7c8cf065148e8e03a6b23f93501 *inst/extdata/fasta_dir/pput.fasta
53b1e28f523e0e46c66946fe361b2575 *inst/extdata/fasta_dir/smar.fasta
01f218e000d9bdf5a6fa47f4991fda52 *inst/extdata/fasta_dir/smut.fasta
6b74dcb934eaa8bcbb783bac0fc7535d *inst/extdata/fasta_dir/spar.fasta
4d1018a1bea7d563e8ade03e35718095 *inst/extdata/fasta_dir/swit.fasta
36a3a734b441cc670c2c834c6bb76ae3 *inst/extdata/groups_example_r.txt
60cee33c32a0a138b5ff4a9a93b6ded3 *inst/extdata/matrix.csv
5c4f7d20ad64e76bb3b07c88a453cf47 *inst/extdata/muscle_tree2.dnd
7c1a49e14c9a4ff52ff9c904deae5567 *inst/extdata/orthologGroups.txt
7d5f050fd18265cc0c3d7ee7284be7d8 *inst/extdata/outputs/OG5_126801data.csv
da539412a483460e7978fff9d29b3b10 *inst/extdata/outputs/OG5_126968data.csv
8b97f57dd5aa647a9b35eef92fb498e1 *inst/extdata/outputs/OG5_127007data.csv
65776934a8e4f8f336d5135d2b86b1d5 *inst/extdata/outputs/OG5_127151data.csv
1efc3846937bd10f928deb20c60ff84e *inst/extdata/outputs/OG5_127267data.csv
4662d79567022188ae1b632f64f750d3 *inst/extdata/outputs/OG5_127532data.csv
a8efd6c00ca6dfa01490049315e0ff53 *inst/extdata/outputs/OG5_130166data.csv
d790fee5d1c0543c706263bec4a16845 *inst/extdata/outputs/OG5_130794data.csv
e237d399f19dc0c98989d3e7d9f37403 *inst/extdata/outputs/OG5_131047data.csv
ed383cef803b4a095d340a4e160a79c9 *inst/extdata/outputs/OG5_131512data.csv
a38ae5599030bb83f9c38f165038cf41 *inst/extdata/outputs/OG5_132018data.csv
53203f15c2e59acfcc988d7852fcf8b7 *inst/extdata/outputs/OG5_136502data.csv
d77025561564ca6ce2ab98f418c37115 *inst/extdata/outputs/OG5_138794data.csv
19ef6405fb1823e527deedc25300732e *inst/extdata/outputs/OG5_163100data.csv
f99c66c99c177cf6b7c7e9d9f417f5b3 *inst/extdata/outputs/OG5_164941data.csv
0e75d01fef59d8810f17ed3b1dcdae85 *man/AnalyzeOrthoMCL.Rd
8f079e5f4612918395f685217b5ec935 *man/CalculatePrincipalCoordinates.Rd
b6de92cf775cb315896b00fe819e4cfd *man/FormatAfterOrtho.Rd
8af0a6cc69efc45ddc97760423b2f4b8 *man/FormatMCLFastas.Rd
73aa79488a1fba1ce63addd2da61b4b5 *man/JoinRepSeq.Rd
fc946c73c7db62af9fe2ec95f60c6946 *man/ManhatGrp.Rd
84447cf3df7c81f4598a4dc84f0764f4 *man/PDGPlot.Rd
4c7c670e89fa6cd445fd8bbe7c4cf83b *man/PDGvOG.Rd
1a801e1e80d25f76f6c116d806dbd119 *man/PhyDataError.Rd
900fbaad8d056692908a0b313bf70ac3 *man/PrintOGSeqs.Rd
bca2cb6b94d195ac868201b182e64d7b *man/QQPlotter.Rd
329e69d3464ee13c8f1c4197ada4204d *man/RASTtoGBK.Rd
b72e99ac81085a449152878ea24a808a *man/SurvAppendMatrix.Rd
42f3e6ffdae6a7e820c3792a5c7b86ad *man/WriteMCL.Rd
13315d13ab4e636049f3f37a87dc491c *man/after_ortho_format.Rd
da31645d42edc0aa2614d10c23f6371b *man/after_ortho_format_grps.Rd
f72da5b7f5931349f7c95087845bcc91 *man/joined_mtrx.Rd
842e3cc5c01d87c4006f65561e181da4 *man/joined_mtrx_grps.Rd
21019541b8c901bfa1cca9d325e4a285 *man/mcl_mtrx.Rd
d2f07214aa709df38081fff1aed83cb3 *man/mcl_mtrx_grps.Rd
5e400e0262bdb30dc63cb0c41b3714a0 *man/pheno_data.Rd
5169629ae0f84debb6f7df9e2d97a887 *man/starv_pheno_data.Rd
9277036cae8ccc163ba6bc4b2347a687 *vignettes/using_mag.Rmd
