4e31fd9d70ecbf9eb304aaa4ddea4081 *DESCRIPTION
28a5dec2594cb984dc5609c7dc27609b *NAMESPACE
3d689b446b41acbd37b00aebb34d4603 *R/COMPOSITE.R
2c49e2ab8e89630bb55834d2b9e35b3c *R/ICAMS.R
eb167ed77dadbd28f5b201a8e8548bc2 *R/ID_functions.R
1cb931c2e9d9a7e3542411a66c941def *R/VCF_to_catalog_functions.R
07dfd262e74ae866420387c2b8167685 *R/data.R
7bc4041a77844a5874fc1505da0756c1 *R/other_catalog_formats.R
5535270c7ae9e5d657e4b8b80343f844 *R/plot.R
2d72fbde7fe8b05aa75a917d8516e1ca *R/read_write_catalog.R
4b99c5829ead055a232ae6ed5af94b88 *R/sequence_context_functions.R
d5042d7bbf773cc78ea65f7cbacc5e65 *R/shiny_related_functions.R
8e42990d14eadabf2da5eeafdf742e88 *R/strandbias_functions.R
0521381348d83652ece6e3676619e08e *R/sysdata.rda
d72079f424a18274461922cc84659951 *R/test_functions.R
c1d956c47e4a1f4c1535a5a7093895e7 *R/utility_functions.R
7b5311c8086ca037797d4b7dafc2de24 *README.md
a3b091fbd036fec48e42d2286926c71d *data/all.abundance.rda
8db5f2ae2287d33313ef3ca30e2f534c *data/catalog.row.order.rda
751bf997e6db4a77f9ef9f217af864e3 *data/catalog.row.order.sp.rda
0e804e76b0b8b703a0607eca3b7b1b37 *data/datalist
bca0bb67d2e97c4df39a965e3d9085bc *data/gene.expression.data.HepG2.rda
98560509f632d221dda84564e9a6b68a *data/gene.expression.data.MCF10A.rda
b407a3a2d65bc33bb73fa913688c9631 *data/trans.ranges.GRCh37.rda
3bef76658cc5386883908e54876083e9 *data/trans.ranges.GRCh38.rda
9fe8923b276e98fcaa3a0a08caee602a *data/trans.ranges.GRCm38.rda
a1499627e351ce01cdd4afc986a95cde *inst/WORDLIST
47e64d90dab12eae3f3400658b443fc1 *inst/extdata/Mutect-vcf/Mutect.GRCh37.s1.vcf
a5f2f768f124a83f5f3196bab8cffbba *inst/extdata/Mutect-vcf/Mutect.GRCh37.s2.vcf
ab08055f2269c91cdb7d3638fcd9c049 *inst/extdata/Strelka-ID-vcf/Strelka.ID.GRCh37.s1.vcf
830eeb0447c976fd8643988345d236e5 *inst/extdata/Strelka-ID-vcf/Strelka.ID.GRCh37.s2.vcf
20fd81b0e6ccc6ed894507e79faf917b *inst/extdata/Strelka-SBS-vcf/Strelka.SBS.GRCh37.s1.vcf
8765299107b144365af5b3d1b05cafcf *inst/extdata/Strelka-SBS-vcf/Strelka.SBS.GRCh37.s2.vcf
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69517c0a38d4aad63ceaf6a9fa028c85 *inst/extdata/mutect.regress.cat.dbs.144.csv
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68b8bb869d3f5a6b1c89552b2dd35bc2 *inst/extdata/mutect.regress.cat.indels.csv
2f323cc5ace489c47cf212b7f53474c8 *inst/extdata/mutect.regress.cat.sbs.1536.csv
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4fdcdd79f6831d96182de270e1448eb0 *inst/extdata/mutect.regress.cat.sbs.96.csv
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6c3299beeb5916b7fa775d515944de6e *inst/extdata/strelka.regress.cat.dbs.144.csv
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4af477fb9f00854054886b4d5d21c5d9 *inst/extdata/strelka.regress.cat.sbs.192.csv
81693d82934a743332d1aa3ab0b7b292 *inst/extdata/strelka.regress.cat.sbs.96.csv
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592a3075fbd10fbbc529868d65e9d216 *man/AddSeqContext.Rd
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1c9d29fb4ea182071b0bf361ceb5510f *man/GetStrandedKmerCounts.Rd
81884de89ba8317541f787c05b9c3c3e *man/GetVAF.Rd
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2ff25e8600a935515cbfe4abb2ddfbcf *man/InferAbundance.Rd
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47cd8b49fb7067e76caca4083145e1c6 *man/IsGRCh38.Rd
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cd6e413d764ee1521b4f4011bd80f9ed *man/ReadStapleGT96SBS.Rd
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ecfd13f2daa70ed405233762dee1cf9e *man/RemoveRangesOnBothStrand.Rd
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