5b288981fe24508bea7804689c016fb1 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
e0b789d2c9f65d45d05b6df690fec67b *NAMESPACE
dbc17ae70831cbb6f4a91b658837bb76 *R/Hmsc.R
a6eb9815e462046274b5e95789a997f1 *R/HmscRandomLevel.R
e15597c4b343969958d9a0ad19dc6d54 *R/alignPosterior.R
7f40bd56d991a102211a1e4ba2ac0990 *R/biPlot.R
66542358fd04b7a5602ecbb1bf871c09 *R/c.Hmsc.R
1e20f4acd1ec94db59d4634e4557aeee *R/combineParameters.R
a0d8d1011598b2644c1f2ece0fde8468 *R/computeAssociations.R
331fbbe089feaf6539c2564d239369e9 *R/computeDataParameters.R
2121cea4acca92222fd8b5db4dbdda8c *R/computeInitialParameters.R
72c8c41151312ac3c5778a6abb6fc733 *R/computePredictedValues.R
bb8d692e8fdefa682dfd8d64e04ebf6e *R/computePredictedValuesParallel.R
8096b02a3b62b013fe2f311baac34790 *R/computeVariancePartitioning.R
28499525ce3ad1cb00883e28a68ac39a *R/computeWAIC.R
46bd00fb4a223fa0843da7a29abdbff9 *R/constructGradient.R
9378eca314b0116e5fbfec8801649678 *R/constructKnots.R
ecfb103b043bb31c5a6c11e171315a86 *R/convertToCodaObject.r
dcdd2c357a641ae6d201b25220d3ece2 *R/createPartition.R
ab8c3df16e55097b67d9e0138195050b *R/data.R
08d4b722c687fbbbebbc8f74e3d4eb07 *R/evaluateModelFit.R
c4485f6af4b4b47b00e52d8fb3eeaa4c *R/getPostEstimate.R
c7f49ae57377f064fceb74939900aedc *R/plotBeta.R
262628132d324cc3467ecaf9203e1aa8 *R/plotGamma.R
e0bc37b562798a9e58d09f60f4d3f9cd *R/plotGradient.R
988bb3ba32497bf643828c1851034a40 *R/plotVariancePartitioning.R
93026853df5ea5ed3eecc208ac94133d *R/poolMcmcChains.R
12dcc99ec3dfc67c8018dfb78922e18b *R/predict.R
93f0e6b452888494685d0326b98bc46b *R/predictLatentFactor.R
d5365bb40cb95147e128e4d75df779c4 *R/prepareGradient.R
2cc50af08ea1344b908ad08461bcb15d *R/print.Hmsc.R
27dc78595358da73ef1e55c346340fcd *R/print.HmscRandomLevel.R
3a01eb8627465e55e5378dca90cda264 *R/sampleMcmc.R
dd2aa0af91701b6fab579e29484ee8f8 *R/samplePrior.R
955b6ae87f7875e578629b485b872b16 *R/setPriors.Hmsc.R
c7a17c52b27c62a8af68b6934e1e5f54 *R/setPriors.HmscRandomLevel.R
f07c3d4f152cf07048a52b4bdd42d641 *R/setPriors.R
45ff8085a9d078b8318aacf1bc03d6c2 *R/updateAlpha.R
b7c0d2e6a1c61abb931ecec78a38a569 *R/updateBetaLambda.R
a432e8801eb900fb92a1562b24164b52 *R/updateBetaSel.R
e656f58e627429c1c45516e36bea9f4a *R/updateEta.R
8ce45d8b63f1efee40cf783dd2ac9bea *R/updateGamma2.R
1fd9b8a824a3930b405c69910e6d1405 *R/updateGammaEta.R
a0823decbdfb4bc03064a56a920662a0 *R/updateGammaV.R
4eeca62c3a2ed87bee5765a22f9f5139 *R/updateInvSigma.R
73c2f29c6a99afb5176141456e668e54 *R/updateLambdaPriors.R
568ed876c29967de897336aa151984f2 *R/updateLatentLoadingOrder.R
b68f208c814595eba1bbbfceec0bc12a *R/updateNf.R
d389cdbbea14f97d9fb9d7619864b163 *R/updateRho.R
6e30b399f224bd54591bdce16c67d645 *R/updateZ.R
b3a3dc5d4dc0cfac7763bc77fe32141e *R/updatewRRR.R
aeec5d4ccb44f9b04193c1c39609f3c4 *R/updatewRRRPriors.R
614299f5c94c7d57f4014afefdab412e *README.md
0c6ad5b3446721162c89589e8077ab1c *build/partial.rdb
df5b416fbe38a521adb717cd1b6f584f *build/vignette.rds
da6075abda2d4cf088029e6913b5a6ea *data/TD.rda
c53c5b0af8e91a8bc8276d44a159ab96 *inst/NEWS.md
45a82df56cca5b60efdcdce12caa0e53 *inst/README.md
4b26e936e0a13799e037b88d167be447 *inst/doc/vignette_1_univariate.pdf
6fb15f62f62e2601b2da0e7869eb49c4 *inst/doc/vignette_1_univariate.pdf.asis
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4baf8a53baa514c93584cf99bbdc0151 *inst/doc/vignette_3_multivariate_high.pdf
1cdc01283b89407b8719f73b6c6fd821 *inst/doc/vignette_3_multivariate_high.pdf.asis
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8316aaf721d98f9b9256fd382d63a19d *inst/doc/vignette_5_performance.pdf
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c2688b04958dc5a326096b5288b21d1b *man/Hmsc-package.Rd
25a156fffe2a7adc9aad4e4c850456f3 *man/Hmsc.Rd
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8d1976de6d312ae18c8245f0dccd1f90 *man/TD.Rd
6b8a4d1eb6900c23a685890a609c6916 *man/alignPosterior.Rd
a1fff368d8f7052c6c081a9baf2f9eb7 *man/biPlot.Rd
21c4fa37b639c3a3aba4cfe816da3965 *man/c.Hmsc.Rd
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ef44984f1cc6eed423287587b5cf7bf7 *man/computeDataParameters.Rd
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7622f515cd1d29aa2c97343899de560a *man/computePredictedValues.Rd
de35ba50bf4f37dbec8d863bf6496b4e *man/computeVariancePartitioning.Rd
ea45186cc4a13c7b357f7a48ffc10a46 *man/computeWAIC.Rd
43dd78a1018bbb4589b2b6620e2c09f2 *man/constructGradient.Rd
ede478d776ada6276e0159099747a4ae *man/constructKnots.Rd
73c32003ddf670207bcdde0bc3bb69a4 *man/convertToCodaObject.Rd
099282c8f1be3fa8f3f7b3d116361c57 *man/createPartition.Rd
b3aa13dbf8b528058baa85267d26ea70 *man/evaluateModelFit.Rd
489e080591f52449b10fa5f44ab3bc34 *man/getPostEstimate.Rd
ab98f70ecca3de9de13ea9bd5746e41c *man/plotBeta.Rd
0d408428268e56c10dfcb8be5f11ddfa *man/plotGamma.Rd
0a6e31adc698692fa5ddbf2999a8044c *man/plotGradient.Rd
5f7081254fa741be57459846896af163 *man/plotVariancePartitioning.Rd
a57c50277d45848121bc9f24a0417ead *man/poolMcmcChains.Rd
5114c3fb68ec5783757560f0dbbc5e2d *man/predict.Hmsc.Rd
2e1d0b809f5f2b0cc48547832b840fc6 *man/predictLatentFactor.Rd
a7cfe2c85174d6b41b9f3c78fd96260f *man/prepareGradient.Rd
695b3b1d26421ddb73fcd19597ba6bcc *man/sampleMcmc.Rd
518b7aecf3f720cd8a22e50bf6a67ab5 *man/samplePrior.Rd
686564634b52ac43ea7a6e02082f3f26 *man/setPriors.Hmsc.Rd
fd7e8bd0a767b9a48763b1cb185b891a *man/setPriors.HmscRandomLevel.Rd
521784c9ff4ed56cf0c0cea384aa62ef *man/setPriors.Rd
fd5606896d6f9bc1dc1b345a739113e2 *tests/Examples/Hmsc-Ex.Rout.save
36e9abe5dd74239636c3358fbb7d3514 *tests/testthat.R
0ea280591ca706d4fc99eeb7b07c0611 *tests/testthat/test-WAIC.R
c0ebb117893fcf755009c50278c2d81e *tests/testthat/test-initialParameters.R
b8e2e576fc1658197c02a843b0ba66a9 *tests/testthat/test-sampling.R
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2bf29bf9fb741a0db8155413e6d642f9 *tests/testthat/test-setPriors.R
528b6e76ea7bf22963e4977783393992 *tests/testthat/test-setRL.R
c9b3266175f6e30013c5eaa872581531 *vignettes/README
5f3df27513b0aa7fc7472bec874dabae *vignettes/load_libraries.R
eeeae2e7d5f6396e8b4aa88a9eee3093 *vignettes/makedata.R
3e23f6e2b387740902ad813d7dc247aa *vignettes/vignette_1_univariate.Rmd
6fb15f62f62e2601b2da0e7869eb49c4 *vignettes/vignette_1_univariate.pdf.asis
45388f470fcaee2ebb6587bb2d7b7404 *vignettes/vignette_2_multivariate_low.Rmd
ccfb64fa2ba729cf73fb7f0e5ebec8a9 *vignettes/vignette_2_multivariate_low.pdf.asis
305698ea1a3aff908cda15886c859e5b *vignettes/vignette_3_multivariate_high.Rmd
1cdc01283b89407b8719f73b6c6fd821 *vignettes/vignette_3_multivariate_high.pdf.asis
aa33bec54b82e6dc79e2235296b6c069 *vignettes/vignette_4_spatial.Rmd
788ffa1fbcbd02f0959a080069f0364d *vignettes/vignette_4_spatial.pdf.asis
58b8e17c2a93da856c2be27bc34d312b *vignettes/vignette_5_performance.Rmd
e194e2d51a97bb1ea7343f7823df10ff *vignettes/vignette_5_performance.pdf.asis
