# Generated by roxygen2: do not edit by hand

S3method(plot,GSNData)
S3method(print,GSNData)
export("gsn_default_distance<-")
export("pw_id_col<-")
export("pw_n_col<-")
export("pw_sig_order<-")
export("pw_sig_order_2<-")
export("pw_stat_col<-")
export("pw_stat_col_2<-")
export("pw_type<-")
export(GSNData)
export(buildGeneSetNetworkGeneric)
export(buildGeneSetNetworkJaccard)
export(buildGeneSetNetworkLF)
export(buildGeneSetNetworkLFFast)
export(buildGeneSetNetworkOC)
export(buildGeneSetNetworkSTLF)
export(combineRGBMatrices)
export(complement)
export(contrasting_color)
export(distMat2Rank)
export(distMat2UnitNormRank)
export(extract_david_GSC)
export(gsIntersect)
export(gsIntersectCounts)
export(gsc2tmod)
export(gsnAddPathwaysData)
export(gsnAssignSubnets)
export(gsnDendroSubnetColors)
export(gsnDendroSubnetColors_dark)
export(gsnDistanceHistogram)
export(gsnFilterGeneSetCollectionList)
export(gsnHierarchicalDendrogram)
export(gsnImportCERNO)
export(gsnImportDAVID)
export(gsnImportGSEA)
export(gsnImportGSNORA)
export(gsnImportGenericPathways)
export(gsnMergePathways)
export(gsnORAtest)
export(gsnORAtest_cpp)
export(gsnPareNetGenericHierarchic)
export(gsnPareNetGenericToNearestNNeighbors)
export(gsnParedVsRawDistancePlot)
export(gsnPlotNetwork)
export(gsnSubnetSummary)
export(gsnSubset)
export(gsnToIgraph)
export(gsn_default_distance)
export(gsn_distances)
export(intV2Color)
export(lfisher_cpp)
export(lse)
export(makeFilteredGenePresenceAbsenceMatrix)
export(makeLinearNColorGradientFunction)
export(makeOneColorEncodeFunction)
export(makeSymmetricDist)
export(makeTwoColorEncodeFunction)
export(negDistMat2UnitNormRank)
export(negative)
export(nzLog10)
export(nzLog10.old)
export(pick_MappedGeneSymbol)
export(pw_id_col)
export(pw_n_col)
export(pw_sig_order)
export(pw_sig_order_2)
export(pw_stat_col)
export(pw_stat_col_2)
export(pw_type)
export(read_david_data_file)
export(read_gmt)
export(scoreJaccardMatrix_C)
export(scoreLFMatrix_C)
export(scoreOCMatrix_C)
export(tmod2gsc)
export(write_gmt)
export(yassifyPathways)
importFrom(Matrix,as.matrix)
importFrom(Rcpp,sourceCpp)
importFrom(dendextend,"labels<-")
importFrom(dplyr,arrange)
importFrom(grDevices,axisTicks)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,dev.size)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,rgb)
importFrom(grDevices,svg)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,par)
importFrom(graphics,plot.window)
importFrom(graphics,strheight)
importFrom(graphics,strwidth)
importFrom(graphics,title)
importFrom(methods,new)
importFrom(psych,harmonic.mean)
importFrom(stats,as.dist)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(tmod,makeTmod)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.table)
useDynLib(GSNA, .registration = TRUE)
