4aac11f8ee8da113a8c0c9e29ad6c83c *COPYING
bafe74968baaa8579905f0f63fb67366 *ChangeLog
177191305d5ff254bafc234dd636a5aa *DESCRIPTION
787cb3203b30354aa037cccef7028e68 *INSTALL
e61e0eeb730779c9fbcb128da08d5bee *NAMESPACE
0f47a8e6731a11682a7ccec481cca0b8 *R/000_globalVariables.r
61755d9a94ee227b7fb4f56ae8fb022f *R/00_control.r
e49f9e5322cd694eb176ac791a4bf3e4 *R/01_simple.r
c94dca2d6792a25da9c0e7068f2be9ef *R/fcn_Jaccard.r
98f55234d30bfcdbbcbeeb27d6fc94a2 *R/fcn_RRand.r
b11a024326a4894cd45ef6b177812c50 *R/fcn_boost_plot2d.r
76cae5b5099707c82826d30463618e36 *R/fcn_boost_plotdens.r
6f74ec372bf261f4db88ee02f72d48b4 *R/fcn_boost_tools.r
7c13f595d0999c37cd9deafb75143992 *R/fcn_dlmvnorm.r
f687b72808bed74270d906918d7ee1a1 *R/fcn_e_step.r
462d97004494bd7d4bf0971af0579988 *R/fcn_emcluster.r
9621a5dfe299af61d5eb303c67e6ce56 *R/fcn_emgroup.r
cf76e1706c8d481ab70f95ba7031d9e6 *R/fcn_ic.r
02eed7290c486cfc085a9fc27b18dd07 *R/fcn_init_EM.r
e7ac15926417b5fae8b2e1d67f0301c2 *R/fcn_init_other_shortem.r
5a185da7b5370110f851938f86199edc *R/fcn_init_svd.r
2aebe84057cb20a5ec3681d133029a0e *R/fcn_initials.r
26527308485763d323e5be7ab7f7efa3 *R/fcn_m_step.r
546c623722261a2eaddf5274fa875283 *R/fcn_mytool.r
602e3c9fc2cc433301060d5f9762af13 *R/fcn_plot.r
1433441f46e3b644c2e5707c8e24bd8d *R/fcn_summary.r
0f36e1ed19a76fe80fc97b1ba48b58b6 *R/lmt_information.r
9f43836e7415c0c03c1f23aaeef0a748 *R/lmt_libControurPlotNew.r
de60c539ecc54f8eaa8d6e2c70130000 *R/lmt_main.r
fd9c85e179666d6e622c41f4231e426d *R/lmt_project_to_2d.r
fb2bddaccb41bd0cfb99267e19b43779 *R/lmt_q.map.new.r
12b11f0f7e3afb6ca033d241d25a83eb *R/logit_PI_I_information.r
9c92d9f48783e1c56bb36ccf666cdabe *R/partial_logL.r
8dd69523898bdd55f1845f1584bcf67d *R/partial_q.r
f16eebc3963fc526190671d33cf1db6d *R/post_I_information.r
66e7302c6ad98013dfb5abf957fda5b4 *R/recolor.r
99e11cf69954dda1ce031fd443711c3c *R/zzz.r
b46fff6a4958834e9470e7e1ccff8d9f *README.md
ad0d7892282061cd4b99b9297a4279ff *cleanup
1f0313e1b2d48a3905d06b6ca1665958 *data/EMC.rda
9dab70048bdff5986a308e600725740f *data/color.ppcontour.r
53fd1a99d7a57fade2993d0a1bc085d6 *data/color.r
55f8a638a9283a45d1fe905d0ed1672e *data/da1.rda
c15a9c8825ac3e20e7311c56cce52e58 *data/da2.rda
cbbdf0f539e3544a458aca68253f0fb9 *data/da3.rda
5e565b5cd02cd14a30be5147e6b4277a *demo/00Index
8970bd4e536d5ef380f240eb9a3781e9 *demo/RRand.r
cd9154cf3a7b15dd2d3bae036b821f40 *demo/allinit.r
2d71b6163f5d86730398bd2f35310252 *demo/allinit_ss.r
76bb67ace62ed1aa95ffb28e9a69b36d *demo/emcluster.r
1eee0c0b07133427ca27410f004799d1 *demo/emstep.r
732e995a0e8b731db0a157579808e98f *demo/lmt.r
364e8a043715e338ff5a830960d748e2 *demo/logit.r
d1d3d9a77628d658436b49dfb35b4a65 *demo/myiris.r
ea30937d6eee08aa1cba3a383eb1b10e *demo/oversize_ss.r
72595e7b0a92d7fa11da1f906dadb7d5 *demo/ppcontour.r
096518e2721b7d7a7f8535a4a5d96198 *demo/shortem.r
53d97eac9c26aa30d2c9b0a2dcd74041 *demo/starts_via_svd.r
5109dd3f445d7c2f4221851a56627b66 *inst/CITATION
d9a726608cc931a593172d767d6b2d07 *inst/doc/EMCluster-guide.Rnw
c08d21f4a0a6936db6085d59ad5e3191 *inst/doc/EMCluster-guide.pdf
f655f3975e2bba6cf7b4c8ae68bb0a7d *inst/workflow/crabs/0-run.sh
3ec2f7319d9061f716739895b91dc174 *inst/workflow/crabs/2-em.Rnd.r
8d667e287619dd289cf8880663242639 *inst/workflow/crabs/3-adjR.r
a98de1d867f54b4d80878122ca18f465 *inst/workflow/crabs/3-test.r
e235247d87ae428bc6ea9f4d5e72b611 *inst/workflow/crabs/4-plot_pp.r
0ab68667b8c815df9ac5a1d516d4db5f *inst/workflow/crabs/5-plot_contour.r
af834c1ffcf5e1d6a9a89a895fc9a9dc *inst/workflow/crabs/6-qmap.r
f873e4b5adfd900fca90961290ecf61c *inst/workflow/figure4/0-run.sh
db1a768dbb650b9557bb975409d73fe4 *inst/workflow/figure4/1-simu.r
b2160b1f3d6863e109f2d3a1b054355f *inst/workflow/figure4/2-em.Rnd.r
f244e097bd0fdece249a6216c43a5498 *inst/workflow/figure4/3-adjR.r
883eda71f2b52c9c05496e5d8083285a *inst/workflow/figure4/3-test.r
186713ac430a7db9296f747ae2e2436c *inst/workflow/figure4/4-plot_pp.r
f57c4ee61974900c4f8faa61734b83e9 *inst/workflow/figure4/5-plot_contour.r
adf997319a0ba5574a5d90b6de8c2014 *inst/workflow/figure4/6-qmap.r
2b31bbd5753e8e5b9a5b0cf47b58dbdd *inst/workflow/galaxy/0-run.sh
04322092e4a57ffd8dbf61da8e9b1578 *inst/workflow/galaxy/2-em.Rnd.r
5d6c949e82ea3127c4edbe35ae6f1037 *inst/workflow/galaxy/3-test.r
4d4d178519adfbfa46273161a2026045 *inst/workflow/galaxy/4-plot.r
86ac11858eae44e1a74783f9acf8352c *inst/workflow/galaxy/6-qmap.r
f655f3975e2bba6cf7b4c8ae68bb0a7d *inst/workflow/iris/0-run.sh
c549c500e7f61d2228abec63209dad2b *inst/workflow/iris/2-em.Rnd.r
bb4798e7ff1b2964caf1be7a0b254645 *inst/workflow/iris/3-adjR.r
5dddcb3d592317e42a68066e2cbae121 *inst/workflow/iris/3-test.r
0d4876bf3c865c0d534388fb5c7b6ac2 *inst/workflow/iris/4-plot_pp.r
e818ac02875ebe01db127abdffefe118 *inst/workflow/iris/5-plot_contour.r
29554d3b4881985865d78cabdef17106 *inst/workflow/iris/6-qmap.r
84b7cea6d5aca928a24b8441d632146d *man/00_EMCluster-package.Rd
e1090ed83d7a07053b0bbcbe27f8cc7a *man/11_d.EMControl.Rd
c1f93a0c384820ef20e1b9b47bcf4732 *man/12_d.dataset.Rd
6a05e728cd55411609211c2f7db085e9 *man/21_init.EM.Rd
6582b77c5d21adec0bff1ba96bcb2d86 *man/22_emcluster.Rd
4cf7038b6fbd13390608010b71f5028e *man/23_emgroup.Rd
2d9f155fdf960586106eec9f45c0c1ac *man/30_assign.class.Rd
eb547b57fcf3a0271a7f7dbe69ed721e *man/31_em.ic.Rd
b955473cda2cfb384b36f7f0cdb1d195 *man/32_em.step.Rd
abf68d446184a7c9b277ec85a4051900 *man/40_lmt.Rd
292f2ce71322a99d3254d8ace76f9497 *man/91_mvn.Rd
ef028253b5c7274be1d1cda49bce0c31 *man/92_convert.Rd
045984629214a5f0090793b97cf90434 *man/99_plotem.Rd
ff63404a5de8c4578643dc4a4d6c3db3 *man/99_plotmd.Rd
b04a297904b47b613105b247ff2e7a05 *man/a0_project.on.2d.Rd
585511c54252e85984f62a10896d3fe0 *man/a1_plotppcontour.Rd
724084d57a974dadde75b2423c532aaa *man/xx_Jaccard.Rd
88590177c41cb1700ebf753dc6d76556 *man/xx_RRand.Rd
4b825f10ad2be77c9442063022fdebf7 *man/xx_recolor.Rd
ff714e3a503b5c3920019963afc9d3a3 *man/yy_print.summary.Rd
072a848051aae89fd05df409cea0f6af *man/zx_all.post_I_information.Rd
c3ec7c9cbc908097a2e30a256b941469 *man/zy_all.lmt.Rd
054238d1a3fb2e76e2f8f0880d0fa39d *man/zz_all.internal.Rd
24585ce848b90cf43db8aa3cf412989d *src/M_emcluster.c
f358068c02141933b0d0da2d241ad038 *src/M_emgroup.c
be8a88aab492e2dec1f057a910b98b5c *src/M_init_other.c
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
859e62570ce80b44f1311b5b67e26bb7 *src/RRand.c
91a64de861b474b0cd45bef4bda3a8e9 *src/R_M_emgroup.c
527de45a2da28f8e95bdd9f88822a551 *src/R_RRand.c
fa65ed63ff7c68cef03455e38b40ccca *src/R_dlmvnorm.c
9c532a18ad8b0790a4e8d0209d6c7623 *src/R_emcluster.c
122af7d7b2d528a73dda045083d86b66 *src/R_estep.c
0c21979a3ede5afbbbbe5c3eb290c2e2 *src/R_init_other_shortem.c
9facdd5746af7fb768a0c5a50889bf41 *src/R_init_svd.c
efa3df0f983174754945db14fb42a96b *src/R_initials.c
27dcf70943dc62deb5633d89ba000d06 *src/R_mstep.c
e9f183f2ec00a83966e15edbb417f83b *src/R_tool.c
ceaec8c7bc04e46490e83c42728fef87 *src/array.h
584a2b8f9b2c483749dc196e88b1b614 *src/chisqstat.c
26bff9011fcbcd34da0119971587acb1 *src/classify.c
52a54423223ac322db641d2c241957be *src/dlmvnorm.c
c2e61a1bea3e46b7968cf7c9ab9014bd *src/eigens.c
f0e2927a8ded65030a03f8a60cd45ef1 *src/emcluster.c
efcdeba94b50c56bd98f039f08bb8151 *src/emgroup.c
88c1049b4a5d1c45e17746473bc7b52b *src/findzero.c
ce9ce74f9d1c55546152d8988f22491e *src/hc.c
c57b6939160c2d4467c964af893708b7 *src/hclass.c
730d42c45956727e6775c81ecd5475d3 *src/hclassify.c
2492167782364a17f36f6dd5274e1e5e *src/init_other.c
484b43900b269899635987d16a5b6f31 *src/init_svd.c
904277dbad34e191a868f09d1887acea *src/initials.c
dafa9e562c8308d7045a67c7d6a713bb *src/inverse.c
13c15da37c9adc9f4edaaba271284756 *src/it_R_emptr.c
6ae3fd0d2e48165b2af9743119c75699 *src/it_R_init_EM.c
77f6a08f488f5982d69460b59d6b52c0 *src/it_init_EM.c
e1417b6d214a199549b3514a7c0893b8 *src/it_tool.h
8d11d1ca783297c9bdd8076c38857095 *src/kmeans.c
99f7f257fec3f46fe2f99a600b24deb5 *src/mat_vec.c
d0ba4658132a0c0c6b83cb0ef7e500a5 *src/mat_vec.h
8bf15c1bca6f4f84739469cf722649ba *src/mb_em_EM.c
d71d5366d23d083f49893e0acbc187b5 *src/mb_init.c
9bb016cf3361f050313a292bc0036a41 *src/mb_rand_EM.c
512cb256fa211bdc69b92cabb5cf3bb1 *src/mb_randomEMinit.c
626301f450e6dda92c84de7c6cc04d83 *src/mb_tool.c
d5f3fe0172a6fe0bbe3ac21765f8485d *src/mb_tool.h
60324d067ceaec5f90c0b3a4edc476b7 *src/meandispersion.c
e3a81c04a1e242002dfbb40f22bdb154 *src/order.c
74bdc17beec5a889d6b75db9c76d4c14 *src/order.h
f449edae6413d4d322d538480cb62345 *src/prcomp.c
c636bb63c936a2efc3ae74eb79a07d19 *src/quantile.c
edcbca56bdfe0740e958e0cfab890dd1 *src/quantile.h
7998f39faf7534c8a5e182b7f6ffc6b8 *src/rand_EM.c
2dd28e7116070fa43de66e016c1c2943 *src/sorted.c
ef34a33ff4f9a7ffd4f4e6b7d5ceeb36 *src/srswor.c
039e15d6315f15f3b0eb0d73d938b9d0 *src/ss_M_emcluster.c
32b07f924b5afb27fe6e26c099ee01bd *src/ss_M_rand_EM.c
7ea5f1f88e5ee02b79dd5914e65512da *src/ss_R_emcluster.c
40de1582a111c358e0b8fea0b2533057 *src/ss_R_initials.c
ac183e2033a39dd8c442664658c04c0d *src/ss_emcluster.c
e2773090b4ce00a9cb23d9c5a1c499a1 *src/ss_init_other.c
3314edbe11943080317da15a2a8749c6 *src/ss_initials.c
55e901ea3456d48f5a067c1dc03fabe8 *src/ss_labInit.c
c96be89d8e486029d7266a3f60a107a3 *src/ss_mb_em_EM.c
941c62ee75b07fe3483698633497d391 *src/ss_mb_init.c
f8c002f462f44e9cb60c96591e90fe6f *src/ss_mb_rand_EM.c
16ea4fe05ff16c45a3e5a7eae9fdbe85 *src/ss_mb_randomEMinit.c
e66477a2cfb2e09b2aed53ba3980d593 *src/ss_mb_tool.h
e552e0c05e064b5a3dab5c6513bc5174 *src/ss_rand_EM.c
fa66becd8fdea443e7c0d3de3976dd18 *src/svd.c
7f2dd2240ac44bf3312dec3018926e17 *src/unique.c
93d721fe036edfff31ef36c207e9903a *src/zzz.c
8e54fcfbf32daf6f2f3a3bcddfd31c9a *src/zzz.h
d9a726608cc931a593172d767d6b2d07 *vignettes/EMCluster-guide.Rnw
2d34a2edb45eb9d9f55d6e253fc6bb39 *vignettes/EMCluster-include/00-defs.tex
6e3ca1e66839ff78adb64b3c76cbbfb7 *vignettes/EMCluster-include/00-preamble.tex
bf291beb24231b74f3d6684fbfa2ad1f *vignettes/EMCluster-include/01-acknowledgement.tex
a489068ae24210d0a4056d49ec8c648b *vignettes/EMCluster-include/01-introduction.tex
78d7c046f1647f6579b1941a8a3adb5d *vignettes/EMCluster-include/02-em_init.tex
caee9bfa3fae373436c2acdc8958820f *vignettes/EMCluster-include/03-example.tex
9932b8725106716c7a0080024a931836 *vignettes/EMCluster-include/EMCluster.bib
8cab6c20c5881d211308a5d49df7c4d9 *vignettes/EMCluster-include/allinit.pdf
44164493ceff3b00f78a03da660140d7 *vignettes/EMCluster-include/allinit_ss.pdf
93a906036dbe93123679120d23eeb3bb *vignettes/EMCluster-include/my_jss.cls
2e25a3d101c764a9b0237cb40aabaf6c *vignettes/build_pdf.sh
