ab020c6fd247593f19934b13a0f9e82d *DESCRIPTION
60325fac7a82f3e45ef81515447c8dc1 *NAMESPACE
3f730ab29544fc1d63946a50242f3a42 *R/DEploidR.R
7efdf7afe8931c93c9c3cdf32a85fb6b *R/RcppExports.R
856a9b3317faac53312a512e049ca0f9 *R/dEploid.R
5a2e60ac3ffc29399ffaa1a2308ba8ae *R/dEploidPlotly.R
db8dd67bf1ee95720e0b4deeefe17540 *README.md
4b8735c3042553d77ef67496617e1a7a *build/vignette.rds
461e2dc267742100128d50cd74e757e2 *inst/CITATION
01c90976b229646ca9b46399709688e3 *inst/doc/dEploid-Arguments.R
2cbf6a6a60e07984981e6a2329578f8e *inst/doc/dEploid-Arguments.Rmd
a9c2ba5451ed9582be1822d1ef3c9467 *inst/doc/dEploid-Arguments.html
2cad08193815864d8a26f8ac768ef199 *inst/extdata/PG0390-C.test.alt
07eccfaeb952de9e0460bcc12d457b22 *inst/extdata/PG0390-C.test.ref
cdc601c1d8d4eec2bc80512eb8ee6b6b *inst/extdata/PG0390-C.test.vcf.gz
a18778772a21e2614f37800bf1e3d22c *inst/extdata/deploid.png
d5122a085c423ba8bdeff856b6a6f768 *inst/extdata/labStrains.test.PLAF.txt
a865c12e4c27f049106f134b695a0b82 *inst/extdata/labStrains.test.exclude.txt
58b29caf285f90a0900f2b04443ec465 *inst/extdata/labStrains.test.panel.txt
76a896123fd1166011d6ae5ddbfb5930 *man/DEploid-package.Rd
281d55ad310144f7d9779d4ba9a4b597 *man/computeObsWSAF.Rd
a7dec0cf819f7b734569760e93f0a0df *man/dEploid.Rd
d5231f506efc96d0257c95faf60f4c1a *man/extractCoverageFromTxt.Rd
54c88b77f9b79b1402d0d5b932416e90 *man/extractCoverageFromVcf.Rd
3b94e99a025a308b8e6df581b33125b6 *man/extractPLAF.Rd
1d929973d73c6742bd223e1ffc07b15c *man/haplotypePainter.Rd
d27b68362961277a9dae5718e025b2ee *man/histWSAF.Rd
c15c6c7d70701d6d454e46553ec8f3fb *man/plotAltVsRef.Rd
4a719f9ddd20b1604d7ac33f64c9c251 *man/plotAltVsRefPlotly.Rd
2e3ce3260c47e734c3d0aa28cd153abf *man/plotHistWSAFPlotly.Rd
aa2e2c6ae4087fd61777c9fa17742152 *man/plotObsExpWSAF.Rd
ab1b443b0af8bf81d85e063f3556e80f *man/plotObsExpWSAFPlotly.Rd
8f91e514e27c39a978351e2a9976ddc6 *man/plotProportions.Rd
499310d8b94430a9ff1172326bf9f3d5 *man/plotWSAFVsPLAFPlotly.Rd
57351dea18413509031f78bd2b106dae *man/plotWSAFvsPLAF.Rd
c3adb6d6823db1b19840143fa58ba349 *src/DEploid/codeCogs/asympt_expn.h
9c4cc52f7742819084a453fef38e0288 *src/DEploid/codeCogs/errorfn.h
09168cd629e28c9591a8b7a276acc1e4 *src/DEploid/codeCogs/errorfnc.h
23d6452106b5561002ce0c10f3804ef4 *src/DEploid/codeCogs/errorfnc_exp.h
dd8dd57dee7f3c8d2b45dbf03e8c5163 *src/DEploid/codeCogs/expx2.h
2f905303a07a8e69bbd46a3eedbf34eb *src/DEploid/codeCogs/gamma.h
5a369c47236d061678c4e2ea954a0866 *src/DEploid/codeCogs/ln_add1.h
820a1ecd84ab39df9204e9b1e59b8873 *src/DEploid/codeCogs/log_gamma.h
830e4770c3ef6b5afbd962bc89786b34 *src/DEploid/codeCogs/logbeta.h
4d3024ecd41e77f173a95d7ff2bc55ee *src/DEploid/codeCogs/loggammafrac.h
89734db2e095786f0fd83d721b0ee208 *src/DEploid/codeCogs/loggammasum.h
ae7e51c1268072067ffb113c577f5bb6 *src/DEploid/codeCogs/machine_epsilon.h
ccec2bc4b1d1436416711e52b16ef3e0 *src/DEploid/codeCogs/mersenne.hpp
2f8d156a5ffa6d1f3bb302af68b59090 *src/DEploid/codeCogs/poly_eval.h
785e0971c65e88f066c599e4ba8f9324 *src/DEploid/codeCogs/randomSample.hpp
94c33b48dee38eb7bdc87638e718e09e *src/DEploid/codeCogs/stirling.h
a3585d8d0b267c7076cc835be837bf5f *src/DEploid/codeCogs/xsub_ln_add1.h
ccf0d382ab75490ff2169f016cf93b3e *src/DEploid/dEploid.cpp
3a466176ccc4aaed26325bd05190926e *src/DEploid/dEploidIO.cpp
19bf6527a2e09276b55f6ead8559b4a4 *src/DEploid/dEploidIO.hpp
ee6cc55608c5471dc7c16aa58087f35b *src/DEploid/debug/mcmcDebug.cpp
18baed6c81141bf971540f6eeaaffd6b *src/DEploid/debug/vcfReaderDebug.cpp
7e6d21967aeeb18294f9325b05fecbe7 *src/DEploid/exceptions.hpp
32c3153abb61241132535cb70e6f11ef *src/DEploid/export/dEploidIOExport.cpp
d89a3ce3499ae6ad9d49b8212636322b *src/DEploid/export/dEploidIOExportPosteriorProb.cpp
1175c0426828f9f27d61eff150f2b0a9 *src/DEploid/export/writeMcmcRelated.cpp
5d8d873e67678af9b2c4cd95f10c6493 *src/DEploid/global.h
7fbc338309ac38fefcd64b04bb903e34 *src/DEploid/gzstream/COPYING.LIB
d632447d46c9b1d6ab0103de7a665034 *src/DEploid/gzstream/README
e57e01d94637dbc81291eb52d7b3670c *src/DEploid/gzstream/gzstream.cpp
99d59b3af2c3974f943e118556645888 *src/DEploid/gzstream/gzstream.h
caa5ea78d04f32a480fa6d4008817cec *src/DEploid/gzstream/index.html
78e2cca98f5d11a43af84eccdd9fb96e *src/DEploid/gzstream/logo.gif
72767782fc756a7855f92361e949b499 *src/DEploid/gzstream/test_gunzip.C
ade409024dc2511702be4b25cec98304 *src/DEploid/gzstream/test_gzip.C
667c569a5d455053fccbd853ba195eab *src/DEploid/gzstream/version
1fcb7a50f57a3badf4ddade692ca443a *src/DEploid/ibd.cpp
0029702d7be9123f533a0ce26c9682ac *src/DEploid/ibd.hpp
2b1ee219c92cc8dd7a6b4fbdc7b63e7b *src/DEploid/mcmc.cpp
ea74b841d17de058b166907135a439bf *src/DEploid/mcmc.hpp
3a6972a6e817a2a722dc2d3ab688f68c *src/DEploid/panel.cpp
3721743b908e1121992fa6d681becefc *src/DEploid/panel.hpp
a6765fb4db45924b1d3b2d7ed6d5b0ae *src/DEploid/random/fastfunc.cpp
1a598d9c9df966427a64ef6a74ce56d5 *src/DEploid/random/fastfunc.hpp
d7ee5456f67c91bd7da907001965dd72 *src/DEploid/random/mersenne_twister.cpp
5c40c783d72b75abcd7a5264a74d4c1a *src/DEploid/random/mersenne_twister.hpp
9563d50543ff7687795b66906c787a9f *src/DEploid/random/random_generator.cpp
ad21a81bdcb9369d4c7f9b2d54cb37be *src/DEploid/random/random_generator.hpp
b5d32dc0eb4400054572939f5c403315 *src/DEploid/txtReader.cpp
cd2210daa2a2d666b2beba31a3005574 *src/DEploid/txtReader.hpp
2c00720dcfea641dd7931622f088d67b *src/DEploid/updateHap.cpp
77ea3771b4393f6a04570f4a21a29059 *src/DEploid/updateHap.hpp
8d512180b69a43f5c4a1548e50e5eb67 *src/DEploid/utility.cpp
fb6fff78e8bee8d5095b0a249c6dbec0 *src/DEploid/utility.hpp
6036bb12ec9dfe238f17c38b9a9e7cd0 *src/DEploid/variantIndex.cpp
1471e97687dc414aceb0646be8a137de *src/DEploid/variantIndex.hpp
519c03da78828af6c1ef1c7302cb8361 *src/DEploid/vcfReader.cpp
3eabace70e4231c03910f01b6a7ba8b1 *src/DEploid/vcfReader.hpp
4196a245e535a58793960f565f3ddfb5 *src/Makevars
4196a245e535a58793960f565f3ddfb5 *src/Makevars.win
2b97b24c7193853b75825b3fb76daa7e *src/RcppExports.cpp
17ba2d6c2335e792f616c21be67dbcd2 *src/dEploidr.cpp
c5cc16e00e5cd1b8150a274c1fcfd3ad *src/init.c
d9780788cb9e10ae63d0cfb4ce81703d *src/r_random_generator.h
eedb9b59a5a966b63e9e82308caf7349 *src/test_exports.cpp
e095660d571c0f3ef91ce1211ecb7f76 *tests/testthat.R
2254c18f55a17646c9bd234fb1e80183 *tests/testthat/test-DEploid_tools.R
e6096201933e4b6042e165bca5d80db7 *tests/testthat/test-dEploid.R
f66b335af2d854e56592824fc8df7a0a *tests/testthat/test-r_random-generator.R
2cbf6a6a60e07984981e6a2329578f8e *vignettes/dEploid-Arguments.Rmd
