dab9f3810f03b1841336d970c464a4c3 *DESCRIPTION
2d8b1a3e1d272eecd63d9c3845f9d81b *NAMESPACE
970d7a10fec8ce85e697c59a3bf462c7 *R/DDD-package.R
28d1ed3c01991b53f2fc6aa9625efab2 *R/RcppExports.R
49667dab1f07b2523a18f7232db358de *R/bd_ML.R
6bf6a2e87e5bf7b5c2505aff5517ff8a *R/bd_loglik.R
abbd6a6498e1cddff801e5ba469a8786 *R/bd_loglik_choosepar.R
15c2728331a2fd07e9748899aea0b643 *R/dd_KI_ML.R
6107b80dc55a8f02931ab219e1da89dd *R/dd_KI_loglik.R
ce05b9f95fc79fb53840f06d1b39cb05 *R/dd_KI_loglik_choosepar.R
e315fd401b652553cc2dc1aeea5f326b *R/dd_KI_sim.R
34990fc3b844e5d650d8884e9dc4acfb *R/dd_LR.R
4127574a04b3e58b28b1cd845df76426 *R/dd_ML.R
ea114c5560e1967f1830ed6b526dfe5b *R/dd_MS_ML.R
e69de3c22b0c65127e8f0a10653f310c *R/dd_MS_loglik.R
7f0cecde751e25656cffb40bb4b9f727 *R/dd_MS_loglik_choosepar.R
0d27cd14a2f8f3f1f44286326772151e *R/dd_MS_sim.R
8a3ec36aaa6e33c9affec191078a1332 *R/dd_SR_ML.R
f52a6c79cc134f92411466b432149768 *R/dd_SR_loglik.R
4cc410da8c37b379e8adec2e750eea1d *R/dd_SR_loglik_choosepar.R
242a275921e78a32eaf07fdb3db32f76 *R/dd_SR_sim.R
e0777d354c0a2b5ad5ede75ce1473359 *R/dd_bootstrap_sim.R
22a1296b16309dbeb093d9e6c9db564c *R/dd_loglik.R
e779d98f320715f4c3a723a609c49f76 *R/dd_loglik_M.R
b9c38a612c320139181a3ba101f791c4 *R/dd_loglik_bw_rhs.R
05c5b3c28b89b481fb580f2abe8cb960 *R/dd_loglik_choosepar.R
97acdb53dcf0918392780ca4097e898f *R/dd_loglik_high_lambda.R
7d15a8cd130eb7105ead6288198a940e *R/dd_loglik_rhs.R
a5cc17840c29a39ad6cdcadda6fdbe19 *R/dd_logliknorm_rhs1.R
fc3365dff57aa9a45b0a170b792e24ef *R/dd_logliknorm_rhs2.R
667f21f1ab96a95e6da3388469d6a974 *R/dd_logliknorm_rhs3.R
f87386881bab906e427b4d3f7207297e *R/dd_sim.R
636dd364e09ec588a91101e2dc37d8f5 *R/dd_utils.R
98c5f95bb8446e46796099a8421aed7b *R/lamu_dd_td.R
716ebaf1cac50a4310eace08b7c257a8 *R/td_loglik_bw_rhs.R
7beb87ca9d94b55f86b727867b8f8f1a *R/td_loglik_rhs.R
26f1d403c373460ed6eb8b2758e8debf *R/td_loglik_rhs_sim.R
3e3600ac2359f3e389572198b85a13c6 *R/td_sim.R
cb4924f3573383fca290a0a8e2ca5294 *build/partial.rdb
0b81273f7bc231440460a112eb11d430 *man/DDD-package.Rd
b2f870ad704f523512a39e6ab4c11c64 *man/L2brts.Rd
af71efadda994f6a4704f9ed1bfe7491 *man/L2phylo.Rd
576e604155670af4f3d49b68e4c21229 *man/bd_ML.Rd
bdb8591959214df93500f21e11e83408 *man/bd_loglik.Rd
8367d01bcaea15a4b01d0dee4a444f08 *man/brts2phylo.Rd
405abe71a7423c7ad9a679102578e55f *man/conv.Rd
e8a5ad3db718886efebfdcd341d77925 *man/dd_KI_ML.Rd
8e79eff44afd34834e52af406d09deeb *man/dd_KI_loglik.Rd
718c58def3332fe89d5518f7037417bf *man/dd_KI_sim.Rd
0de395a0d4ebf21f44d19f5751d7a1fc *man/dd_LR.Rd
c270b6bebb9b33bb6fb204e10f1b7f55 *man/dd_ML.Rd
2ed47a91198a74cf2d6ed56dbd1b702f *man/dd_MS_ML.Rd
01c4a822354286369a70e3b3d6b1b0aa *man/dd_MS_loglik.Rd
6e7c41c4244722906f16fd970007d6ec *man/dd_MS_sim.Rd
ce4912c9ebc496ad3b8c5476923050fd *man/dd_SR_ML.Rd
4cc77a31e9b791bc92b8fa5c1fcf761b *man/dd_SR_loglik.Rd
968d5b5d4b5c18614227a163edb05c90 *man/dd_SR_sim.Rd
02a87ff8dbbf2234b589af3971001d95 *man/dd_loglik.Rd
f2c0dee8d63d9ef259b278ae4482cc71 *man/dd_multiple_KI_loglik.Rd
4d3af83887dea720ff47cf48231231e6 *man/dd_sim.Rd
e9df9114082fb3521483750afeb3466e *man/optimizer.Rd
068f63b3804c86371072e3e0a2503bd8 *man/phylo2L.Rd
2faf49825d5492d2cc91871bdd3998bd *man/rng_respecting_sample.Rd
4bce6ecb34d9ed7cf0d3aaf4af72e532 *man/roundn.Rd
ca504a2da45df3555b462cee3486a902 *man/sample2.Rd
d4b76e6c65b99f82ec457f224b6ad54e *man/simplex.Rd
b942a59119dc7ce62ed522658d437b72 *man/td_sim.Rd
0810dd1b5f4f82d84abe37046102628a *man/transform_pars.Rd
6789e9c78d8785796bdba1b3d31b72f7 *man/untransform_pars.Rd
0ec76e8a2066b4482bff181261bc0298 *src/RcppExports.cpp
b860b8dc01bf42040c8a6fccda0c2b96 *src/config.h
11c32fed389db10d72d948b77f22c5c5 *src/dd_integrate_bw_odeint.cpp
a09613c3051257cbd98805b8962e4c2e *src/dd_integrate_odeint.cpp
e3143e0a106dee7a359d260c4838908b *src/dd_integrate_td_odeint.cpp
e303976c221b26d3bc1a25fef8814af1 *src/dd_logliknorm_odeint.cpp
961f50fc8f43c58571c5fa12ecfbf10c *src/odeint_helper.h
34fd170136f60cea7ef3896951bbe6e7 *tests/testthat.R
4358457520ce78d4ab774957caa38ed2 *tests/testthat/test-ddd_sample2.R
b9cfc4a6beb5789e90effa1adc8cbced *tests/testthat/test-optimizer.R
7801f52eb8587f5da8041c3a7e00bdae *tests/testthat/test-rng_respecting_sample.R
981a3afdd19c5f2102da221bf68e819b *tests/testthat/test_DDD.R
c3d3f162eae2f61cd21e379bde439317 *tests/testthat/test_pars_dd_loglik.R
