d4c8b8025dd559f106f7d55ec3a8cf84 *DESCRIPTION
8b58e77342689365209d0a20eb0b5295 *NAMESPACE
f3e7c3cd9eff793325c911d3dde546eb *NEWS.md
e154bfc0f50fea35c2e225c1a940e1d3 *R/CrossValidationControl.R
6a5c1d1c0ad0772bb2293b82e2e3681b *R/DataManagement.R
6ec9aff5c5e1ee81b17414c7c02d324e *R/ExampleData.R
df3a46173a19c793f16e278d695ae39e *R/LegacyDataConversion.R
868f656e11692ee7cc074c9d634bf828 *R/ModelFit.R
60ca5cb8e92f940d36463587bb35a127 *R/Multitype.R
b5bab42775c6c2fe6886097bb09bdd58 *R/NewDataConversion.R
a777bc2f6acf26d8250ba3479df884d4 *R/PackageMaintenance.R
31305442425eb559dced4c1e33e74cf8 *R/ParameterizedPrior.R
381c6a52f619809534539dfe5aaf2bac *R/Predict.R
9358cc4ac036e65133478d81b3d41117 *R/RcppExports.R
f6a6d1d23eea398e450c63fd785dcfba *R/Simulation.R
12ac98c65da0a7d909ec90a5f4ef5788 *R/SpecialPriors.R
2013626eaf710f3329b22c837e5eda55 *R/Survfit.R
5b2eae8e199d92ea1ffc2c63af60fbb2 *R/cyclops.R
0cd336fe2a71342c59d7092aff7df56b *README.md
97359edf34b53a80b1b890aee97bb88a *data/oxford.rda
486ad7931a4cb183f491056c91677af9 *inst/CITATION
753808a2c8e308b2799fd4a37616dd19 *inst/extdata/CCD_LOGISTIC_TEST_17var.txt
4a383b610893ac9ef9d35738233ecaa0 *inst/extdata/cpr_test.RData
fb36d50ec38c3d48f059777bf2240cd3 *inst/extdata/infert_ccd.txt
4f59d5272f74ab7b1b78312887b41ac7 *inst/extdata/test1-clr.txt
30ff8d27a506a036cec7b2d62c6bf4c1 *man/Multitype.Rd
3d15e64e50e49ea9cbe21eda51dd4b04 *man/aconfint.Rd
e55a21592915a0bdd99f458dd47edf5b *man/appendSqlCyclopsData.Rd
99319f3b6a8815ba51eadd263afc38f4 *man/coef.cyclopsFit.Rd
16dc6eef8a4b9c1a78717690531f245a *man/confint.cyclopsFit.Rd
27c6227d5a181e5b1f33bddc424c6615 *man/convertToCyclopsData.Rd
c882a425b69f20c871d6f50b25b4930c *man/convertToCyclopsVariance.Rd
8550027f808c1243c49571394973d00e *man/convertToGlmnetLambda.Rd
f9881b5cb9280be5b6e080d9db763567 *man/coverage.Rd
358cfd94df0ff423ac1c534642d9cb68 *man/createAutoGridCrossValidationControl.Rd
96362abb62be09ec764db0b8771b1c7f *man/createControl.Rd
b63c775571f7c11d762adac5c07d13d7 *man/createCyclopsData.Rd
1e84a82589dfad9606446522ec5d734d *man/createNonSeparablePrior.Rd
29140a47f87f79bb4a022aace71287c0 *man/createParameterizedPrior.Rd
b65222c5ccda264e14efa167666cece7 *man/createPrior.Rd
c50a2c76fb4ccb05670576f6ec7c94cd *man/cyclops.Rd
fea51ba502e3e4c4a5e8980fff1519e5 *man/finalizeSqlCyclopsData.Rd
a2ddf6f3d3888026ff6b2ba1027ba684 *man/fitCyclopsModel.Rd
8796c8e969e614bbf11a57aa383f0398 *man/fitCyclopsSimulation.Rd
5a9398b35aa666b6b1c5315188f70ffe *man/getCovariateIds.Rd
e7a8178da8966385cd28b75b5c670f4e *man/getCovariateTypes.Rd
6236e8fc9c325eb0538c908c6358e684 *man/getCrossValidationInfo.Rd
a24cf62db85143b72ea30be3e4236f04 *man/getCyclopsPredictiveLogLikelihood.Rd
f465c1ab0e09bbe6deb0e7510f187f4f *man/getCyclopsProfileLogLikelihood.Rd
d67f519b638e180c5c8b10c1a3b593e4 *man/getFloatingPointSize.Rd
ff8b7e701ae0a8ebfc54186d30cb6da8 *man/getHyperParameter.Rd
506a63cfd0cb872da29c842aa29867ec *man/getNumberOfCovariates.Rd
392fc06e8d066914bd2b699c25fa5a40 *man/getNumberOfRows.Rd
080f5c8f6c9cd07758b1d9f7a846b6bf *man/getNumberOfStrata.Rd
3137b59bb63154ba9337bea4c6ba754c *man/getNumberOfTypes.Rd
83db6410d46b1adc16d630e9201ffe3d *man/getSEs.Rd
06132ae9b790d68e116c4d9f1ada2b54 *man/getUnivariableCorrelation.Rd
131e7a35d16dc3d64a2a317cbf613282 *man/getUnivariableSeparability.Rd
90ab5c18ec8125b194c45210eb18dd50 *man/isInitialized.Rd
e5b0dbc7b5cda3c42422f2038017dcfc *man/isSorted.Rd
2a3aba82b98144e8f4ef573992e4d4af *man/logLik.cyclopsFit.Rd
eca0d373429e45865acb3c6ae68823b6 *man/meanLinearPredictor.Rd
fb0c93f8879275f1fb2011a0c4e3ea31 *man/mse.Rd
00a6cc059fd91c48267411688c4f0b2e *man/oxford.Rd
314c53c30ccb1a187e169221d156f80d *man/plotCyclopsSimulationFit.Rd
85266d5ccefbb45c33c677e6c5ba8982 *man/predict.cyclopsFit.Rd
74ed455e478894c72c2eb49a5a1b2521 *man/print.cyclopsData.Rd
1381e22c4e4302fee3c545e192557d78 *man/print.cyclopsFit.Rd
258c126b12ec0db128f40382eb975dbe *man/printCyclopsRowIds.Rd
6f93297b7ebb7069c2e4248ac6644357 *man/printMatrixMarket.Rd
88e8307231d2840c59bff8b71eecba08 *man/readCyclopsData.Rd
8e1b7a7f1cd5cb9942259ffebd66e97f *man/reduce.Rd
ad5b85a555d3e55c4fd47ed6959103a9 *man/simulateCyclopsData.Rd
bd801448bd0028e258b3ed5059dc3af5 *man/summary.cyclopsData.Rd
aa314d9b381bbbe25b202a1d67e8bae0 *man/survfit.cyclopsFit.Rd
9036946befa1851ab5fe4300215104d5 *man/vcov.cyclopsFit.Rd
8dcb7839a22759a30266a5bb85615b6e *src/BySum.cpp
d524a844d4818c609ad5bc9f8ae09283 *src/BySum.h
689b084e8433c77b51987764b5387630 *src/IsSorted.cpp
2a29ec0260d64c52bdece447322e4b34 *src/IsSorted.h
fd89aedede07c11aa139157f5756ea7a *src/Makevars
e41dd55b96d2e2040f6a4e58f77437d9 *src/Makevars.win
ec8fd69cb1d8e514d6832f3153dc9c7f *src/RcppBySum.cpp
515e266f8877378089e95112dfd6b519 *src/RcppCyclopsInterface.cpp
efc6068dc35df9895b45b2f354f7c23d *src/RcppCyclopsInterface.h
def96cadfcb7568ccaf0f0b708d9c7fb *src/RcppExports.cpp
ce22b2c7b55ee0734e3f0e446e5a1ede *src/RcppIsSorted.cpp
3e8f7989c343af834720ad9471135036 *src/RcppModelData.cpp
409015e916663afd837007cd45a38f01 *src/RcppModelData.h
23eb55caf6bf6c1f65a7f3da8a1b8bc7 *src/RcppOutputHelper.h
7124159a7b8ab59be74b3e95517aa8b4 *src/RcppProgressLogger.h
875d2d3aa859721f18bf466198a5ee12 *src/cyclops/CcdInterface.cpp
44f6e6c75fcd46370d96d2a90bbfa68c *src/cyclops/CcdInterface.h
9f5380bcc5acc219eccca3998c6cbd75 *src/cyclops/CompressedDataMatrix.cpp
e87e7dd87712f949371f95b4ec7d261d *src/cyclops/CompressedDataMatrix.h
73d86f868eaa7a58ee9cb62e4f74a2b7 *src/cyclops/CyclicCoordinateDescent.cpp
ad7c36cfdd386551c761515fafd8a374 *src/cyclops/CyclicCoordinateDescent.h
8c1def28621f4daf20abf51b191ab33c *src/cyclops/Iterators.h
af032b979132c28106d1f786938ce051 *src/cyclops/ModelData.cpp
c678cbc66d830c183fd0727dfa6e2a2f *src/cyclops/ModelData.h
9e4f87ef062b98453bb1a50cb6d96ba4 *src/cyclops/Thread.h
e8c9b94d87a6386dfbb2293068a51e8f *src/cyclops/Timer.cpp
e6bdb68298cb8e55f0a229d9d942e1e6 *src/cyclops/Timer.h
8be32f8b38350e9fef0434ed7bb3bf53 *src/cyclops/Timing.h
0bef21a4fc04d7fb54ae578004251521 *src/cyclops/Types.h
bb3e23c5c1cc37526c18120c3d91ba92 *src/cyclops/drivers/AbstractCrossValidationDriver.cpp
d7d02b84f099d4de5bdaa8d4a8b41b2d *src/cyclops/drivers/AbstractCrossValidationDriver.h
a353c3abc6cf87e80b47761c8cb9d6b3 *src/cyclops/drivers/AbstractDriver.cpp
3897f6f0eb92d1e198183e5d29d05c01 *src/cyclops/drivers/AbstractDriver.h
7937cb97a90a88ffb6001a34a209f6bf *src/cyclops/drivers/AbstractSelector.cpp
490276aa2873cc47c9f9e656ca320857 *src/cyclops/drivers/AbstractSelector.h
e34f5b7d3e5636465644631a5359eb92 *src/cyclops/drivers/AutoSearchCrossValidationDriver.cpp
6281fb429e74ff900e19c4b57f50ddec *src/cyclops/drivers/AutoSearchCrossValidationDriver.h
2fa50f1e8e04877383cfc1d67c06f850 *src/cyclops/drivers/BootstrapDriver.cpp
c94fb0a89d12d809bacde4351eb12a71 *src/cyclops/drivers/BootstrapDriver.h
b9818f68e63b0556210362f96bd7a58d *src/cyclops/drivers/BootstrapSelector.cpp
e10c9505e6268bb8c818b118ad9ff9ba *src/cyclops/drivers/BootstrapSelector.h
a51ba6d5dc1e3c537bea6476cf9fc377 *src/cyclops/drivers/CrossValidationSelector.cpp
a3a46839a710b34aa1ae89f133a37ae7 *src/cyclops/drivers/CrossValidationSelector.h
ddabab250af95bf4266d0bdae4d5ddcf *src/cyclops/drivers/GridSearchCrossValidationDriver.cpp
16675d4c76a7197d31d85c951819509e *src/cyclops/drivers/GridSearchCrossValidationDriver.h
f791e2fb2815f539d5b056fba81db698 *src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.cpp
cb6feefb52c85dd2d29e6e2a1056e7bb *src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.h
80013fa453790680488de1d796907704 *src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.cpp
fd2c6c875cdb7e5ff6e6dc2077a67c1a *src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.h
5baec7f55609b16adfcbdcf294543f47 *src/cyclops/drivers/ProportionSelector.cpp
ef8adbe6ea6e8506b721c61bdb62a0e3 *src/cyclops/drivers/ProportionSelector.h
823306d89e197a596d95b51eef57839c *src/cyclops/engine/AbstractModelSpecifics.cpp
b3bfbffb946762b9bbf7b19882a2e461 *src/cyclops/engine/AbstractModelSpecifics.h
ac1f502c05e618e874dcca1ae62d0743 *src/cyclops/engine/ModelSpecifics.h
be0797aaefdeeafa4c11a423cae2aebd *src/cyclops/engine/ModelSpecifics.hpp
acf9e43262e6647bd4915a0462d352fd *src/cyclops/engine/ParallelLoops.h
c770cd26a35d3acf705afbab0f3a2ed7 *src/cyclops/engine/Ranges.h
63b161a131a2cd2e6ad34f75ff422083 *src/cyclops/engine/Recursions.hpp
c90d8c9fbf861680760f4a7b3d8a12b4 *src/cyclops/engine/ThreadPool.h
579962f6f4266c4fb255e392df4cbc5e *src/cyclops/imputation/ImputationPolicy.cpp
6da0ea9b2391c63aaaade6110f0b6371 *src/cyclops/imputation/ImputationPolicy.h
e77c7db7c77b6ecbd16fb9540a12a7c1 *src/cyclops/imputation/ImputeVariables.cpp
3371cc799854f7dae9cfad657ac2de78 *src/cyclops/imputation/ImputeVariables.h
25080f034fed0ff20678892cfee39e57 *src/cyclops/io/BaseInputReader.h
de98ebf254dc3790af862e10a14879f5 *src/cyclops/io/InputReader.cpp
9a043c5cff82e98fe3e0031f3ce28a96 *src/cyclops/io/InputReader.h
62c15e081f645dc3b4b1cd2938f40cb6 *src/cyclops/io/NewGenericInputReader.h
962d8f791c7b1cd710e65c249ab5da1b *src/cyclops/io/OutputWriter.h
337c02ecbe4037e50b512d2696ab99c4 *src/cyclops/io/ProgressLogger.h
8754d682292ae6a02e67297dbf1fc4e1 *src/cyclops/io/SparseIndexer.h
4ecc774b172912818f03d8ede76ac166 *src/cyclops/priors/CovariatePrior.cpp
0c75db060d6c946a3e0335705d076c84 *src/cyclops/priors/CovariatePrior.h
5a4d0ba4a064499b5607e9ebb8dc4e2f *src/cyclops/priors/JointPrior.h
7c85937901256616886de8ff9cd2fa34 *src/cyclops/priors/NewCovariatePrior.h
7c7029f5514fe299904f792d8f59d884 *src/cyclops/priors/PriorFunction.h
f42330a17bc4be9580b80dc7ee73702e *src/hide/iterator.hpp
903ed36aaac09ec796192aa08fddef91 *src/hide/iterator/counting_iterator.hpp
9dd24fa6c201b744ce0bc79b0cd39380 *src/hide/iterator/detail/any_conversion_eater.hpp
5393f5c6c76c2110b7d5ea7ab1734620 *src/hide/iterator/detail/config_def.hpp
f35b79b2466109c8465465f862cb9ac9 *src/hide/iterator/detail/config_undef.hpp
e63ac376def8071ecf41a6e287ee47d2 *src/hide/iterator/detail/enable_if.hpp
8b9297fd9fef091936ad89747b4e61e7 *src/hide/iterator/detail/facade_iterator_category.hpp
8815741feb048284129535e0b66e15e5 *src/hide/iterator/detail/minimum_category.hpp
2618a884fdf6d28184a08e5db12b86c0 *src/hide/iterator/filter_iterator.hpp
ae633f7c9d38567557a431723cfbae1c *src/hide/iterator/function_input_iterator.hpp
2f6518f1aaab1a41304c54163bbd0361 *src/hide/iterator/indirect_iterator.hpp
cc7696079f9aef6bb30f3e522f6b29db *src/hide/iterator/interoperable.hpp
879c9ae49d6b30ce340052c871379dfe *src/hide/iterator/is_lvalue_iterator.hpp
90c7e8c0226a6c47e81b2e9a81b92b73 *src/hide/iterator/is_readable_iterator.hpp
a86f26285a31a272bbfcb29f71576329 *src/hide/iterator/iterator_adaptor.hpp
851a6d5c393a65c8917f8b97154c66b4 *src/hide/iterator/iterator_archetypes.hpp
96033ae5cd1522235afb7123bb94ffb6 *src/hide/iterator/iterator_categories.hpp
78c6ef291ef44cdb61eb45f7aa63b8ed *src/hide/iterator/iterator_concepts.hpp
22256dc873bb52b02a8eefb00edff922 *src/hide/iterator/iterator_facade.hpp
274819c4847761c5467b8669c462ad46 *src/hide/iterator/iterator_traits.hpp
fcc140286887278945a4bc4d7c30bd78 *src/hide/iterator/minimum_category.hpp
f69733fba58a34a99a451181056121e7 *src/hide/iterator/new_iterator_tests.hpp
c3d5e5a5f5d462b36a949a789c2b00ec *src/hide/iterator/permutation_iterator.hpp
2ee6e5337ef4acf30801123eb54d0659 *src/hide/iterator/reverse_iterator.hpp
20fdb5bcf5f5097a28900fc086ad92a4 *src/hide/iterator/transform_iterator.hpp
bcf80417a81e0e95567ae9e7a98a9d59 *src/hide/iterator/zip_iterator.hpp
6de6721d6e361db8e8e468d03847f2a0 *src/hide/iterator_adaptors.hpp
36a8c5ad8e670d6c23f41c480b437b56 *src/tinythread/fast_mutex.h
8a528ad8b8ceed7f8fb75d628ffd5b63 *src/tinythread/tinythread.cpp
41387be167ada858356bf2475fd6d15a *src/tinythread/tinythread.h
4a1c7f2c03ae1e4ba1bbc3ebb4d02f90 *src/utils/HParSearch.cpp
670bc336c29e41a6793b271c124301b2 *src/utils/HParSearch.h
8f24cec642731dde4bb17099841769a7 *src/utils/RZeroIn.h
69cb3bd105d2e5748b3fcca2a5fe3f4a *tests/testthat.R
44a33abdfc02367b6e7ca04d9a434026 *tests/testthat/test-believedBroken.R
ddd10ef218280be20f67c3003842a9cb *tests/testthat/test-conditionalPoisson.R
18a8a1c53dc93bedcecdaf4671668f46 *tests/testthat/test-correlation.R
4171cdf906369f55e0c1bee5fe05a592 *tests/testthat/test-covariateRegularization.R
630306ac74a8dd4b77b90c8e95acada2 *tests/testthat/test-cprViaSql.R
1ab855d24d8d938c248f4bcf54d4f5c6 *tests/testthat/test-cv.R
146b3c4c786b2d6c9acac55178aa13da *tests/testthat/test-dataConversionStratified.R
74ecddd5af2bc11d5f5ba7230df1f199 *tests/testthat/test-dataConversionUnstratified.R
8820ad83e127fde1368ed9f16c18e12d *tests/testthat/test-dataManagement.R
e45b549a1300608be17a2f18bcb6b8c5 *tests/testthat/test-fastBarUpdate.R
d4b6c3b4a52e1f14f9047e0df1d8caa6 *tests/testthat/test-floatingPoint.R
23873a7a5c76ef652d6d06b62b13dcd5 *tests/testthat/test-isSorted.R
45672aeac2e581f89f00c9fdd57edc57 *tests/testthat/test-largeBernoulli.R
5f8f7dc3a7685cb109130f15d0bca6d8 *tests/testthat/test-multitypePoisson.R
4c04c2d1fc57fb87aaeeb4ff8959efc5 *tests/testthat/test-normalization.R
297eefb68ac72b245ed386a86bf5b1c6 *tests/testthat/test-offsetPoisson.R
7dccde66f7dfbeddbde5e9b6f89776de *tests/testthat/test-parameterizedPriors.R
5bb8dc0cbde525794383ea1e565be6d4 *tests/testthat/test-predict.R
e96c39f474fa60731f60ba9971eccf0a *tests/testthat/test-profileLikelihood.R
c5e6647392529779e0cefeacd677b2c7 *tests/testthat/test-reductions.R
3a248f6adfe78a49cdef2368e49d88a0 *tests/testthat/test-smallBernoulli.R
d8d09b3f80f762f2b260df198b895110 *tests/testthat/test-smallCLR.R
9a507b4dcc458a27d88577843e97ee10 *tests/testthat/test-smallCox.R
d570739d9bbe585a55c0b2f799a06015 *tests/testthat/test-smallExactCLR.R
fe2438dd8e03c2a5cf53c0b0e9639369 *tests/testthat/test-smallPoisson.R
82f1a95c069b4724c1bbc03657426965 *tests/testthat/test-sqlConstructor.R
b03d26c039b8b28d9117cfbc5345b194 *tests/testthat/test-survfit.R
d0b21778e29bb0e181c979c89fcee1de *tests/testthat/test-weighted_cv.R
4089bcdbf99edf6eb8ef14a8fa6cc8d1 *tests/testthat/test-weighting.R
5b5077c4ef08413f81fb35b814918c5b *tests/testthat/test-xyConstructor.R
