37298437be30b4abb0e831916c6d2dc5 *DESCRIPTION
f98a0a132a41a61383d4edd112f94e3e *NAMESPACE
1686add2283379d36bb598d6fea04186 *NEWS.md
e9536d8dc707669f2de1af958065a0f2 *R/CodelistGenerator-package.R
8e00e6fec0fdaea34b48c73c32b1db16 *R/achillesCodeUse.R
412a90e190d188d53060b2da4f41bef9 *R/checks.R
619d2614bfc8087959f6b5df799a541d *R/codesFromConceptSet.R
58a7e72209f9538de7e7e5331a100dc6 *R/codesInUse.R
d5070a0c5c95cd35fc97eba53520262e *R/compareCodelists.R
02f655d88d15977b734b92b974aee8a0 *R/drugCodes.R
7dcd784d5d341dedb17c40b061d6e4a5 *R/findOrphanCodes.R
fd87372148cb8659d4f5c03c425e75bd *R/findUnmappedCodes.R
f0039d369e44f0a414407dc4bba3d54c *R/getCandidateCodes.R
ad0fed4a8c9d55d4b6e6c2420bd5c6cd *R/getICD10StandardCodes.R
e7d56b7b69f22cc70d1aa5ddaccd1b3d *R/getMappings.R
bbaf5745c58e6d275b684451f72b3bcb *R/inputValidation.R
783880461575d90cfdecd72aedcb175c *R/mockVocabRef.R
83c1cadbb2a19aca889052ff52137e4f *R/runSearch.R
5b917c6bad4a058f19b9ecf62fbc34eb *R/summariseCodeUse.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
545b5ba0f967eeec20e6b7515520f947 *R/vocabUtilities.R
1cff85942124d5bcca8c0641c07aff99 *README.md
a340440af00511c37140bb968a98189b *build/vignette.rds
42b65802d597896b28b57a304820609c *inst/WORDLIST
3ca9cc5c01f646e385c3530e340c0903 *inst/cohorts/cohorts.json
d41d8cd98f00b204e9800998ecf8427e *inst/cohorts/extra_file.txt
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock/oa_no_desc.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock_dups/oa_desc.json
f86b08baf74ab3e00fe012be61e29314 *inst/cohorts_for_mock_dups/oa_no_desc.json
dffe4627e0a18749069471b9eae24936 *inst/cohorts_for_mock_with_exclude/oa_desc.json
3819d7fc0dd23dc6cfeea1608769e6ad *inst/cohorts_for_mock_with_mapped/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock_with_mapped/oa_no_desc.json
28e6093c2345696d3f91fea3e816dcb3 *inst/concepts/acetaminophen.json
d41d8cd98f00b204e9800998ecf8427e *inst/concepts/extra_file.txt
28bafd24684c6e9809c3942abc441d2d *inst/concepts/influenza.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock/oa_desc.json
01c7b29a2c5b0a1a69c15744ad219cc5 *inst/concepts_for_mock/oa_no_desc.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock_with_exclude/oa_desc.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded2.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock_with_mapped/oa_desc.json
8f9fe3443c0fd13d189bece68077d4a5 *inst/concepts_for_mock_with_mapped/oa_with_mapped.json
516f95980a0978f8641e9d771f1c45af *inst/doc/a01_Introduction_to_CodelistGenerator.R
cba2dee4e26e352a6f14c57bfbc29c54 *inst/doc/a01_Introduction_to_CodelistGenerator.Rmd
9532e34ff588e2e234d7fc6a4972d13a *inst/doc/a01_Introduction_to_CodelistGenerator.html
e7f76c69c99c3e1aa52be97896185269 *inst/doc/a02_Candidate_codes_OA.R
6677ef746a1d97606a3bb53356474268 *inst/doc/a02_Candidate_codes_OA.Rmd
eab351c68f6fb447e8901393f4052256 *inst/doc/a02_Candidate_codes_OA.html
fcde6f60caf0e7abebceb1edcadd9d99 *inst/doc/a03_Options_for_CodelistGenerator.R
399b7e7af8aca69c6f03170c07392452 *inst/doc/a03_Options_for_CodelistGenerator.Rmd
0adb79bb82173bb5e735b406df0f9490 *inst/doc/a03_Options_for_CodelistGenerator.html
4677ab6da3ceb9b2e87fbae866449b72 *inst/doc/a04_codelists_for_medications.R
89b1e3f3b46bc339cccd326161799095 *inst/doc/a04_codelists_for_medications.Rmd
a5c225fad7e9231d89b4050ca77accbb *inst/doc/a04_codelists_for_medications.html
0618707c728e7259350f88f4c9d53840 *inst/introData01.RData
3bf66c1e759d7a5201f8868a14e744b5 *inst/introData02.RData
c583d5e5f085779e27598858fec8e967 *inst/introData03.RData
8a8388cda9d09e8feae92d458cf2ba29 *inst/introData04.RData
5bb685340885dca91d4badfe35fbfb2a *inst/introData05.RData
d628e20467cadee2e399c97675668339 *inst/introVocab.RData
3f0aee4d7f3b1a680b664964f756687c *inst/medData01.RData
f2d5488e07209a41f122545df0754fdb *inst/medData02a.RData
3f0aee4d7f3b1a680b664964f756687c *inst/medData02b.RData
3f0aee4d7f3b1a680b664964f756687c *inst/medData03.RData
35b4a2efa38e84d887ba1a0b82f664e7 *inst/medDataConceptClass.RData
84d8224e1c60d2e100ee4854e139646b *inst/medDataDoseForms.RData
28e6093c2345696d3f91fea3e816dcb3 *inst/not_all_concept_sets/acetaminophen.json
424674aa61b879dace87fb4533ab41b4 *inst/not_all_concept_sets/cohort_def.json
28bafd24684c6e9809c3942abc441d2d *inst/not_all_concept_sets/influenza.json
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData01.RData
013b6ee27df36385526261493562fe18 *inst/optionsData02.RData
024202eb74d4546fd7205db381ee6d0b *inst/optionsData03.RData
0e8ca73b3256cb3f894663e8a1889f7e *inst/optionsData04.RData
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData05.RData
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData06.RData
72b11e006cf645579124d8dce0e72d2b *inst/optionsData07.RData
c5410fa34fb509ed4301df620e93de39 *man/CodelistGenerator-package.Rd
608301d82cf7eed82c0e2d14d937d620 *man/achillesCodeUse.Rd
edfd325119444e8dca100ea45a2073f0 *man/codesFromCohort.Rd
3d78ac0bb1ce374d3bb19d5861423413 *man/codesFromConceptSet.Rd
247d5450526e363052a4d9cf93cdce89 *man/codesInUse.Rd
23bdac49389bf95078b3f4d55244aa35 *man/compareCodelists.Rd
1a03bf764f2802ae51d0140aa38848b1 *man/figures/hexsticker.png
c5042f1da91b485b15f89a8af47b8c0f *man/findOrphanCodes.Rd
949812e88033faba75b7c289b694bfb0 *man/getATCCodes.Rd
bb83a98d176cec56c6ed938e387d90b0 *man/getCandidateCodes.Rd
6e7aa09f168ecdcc85755bd27d5e93d0 *man/getConceptClassId.Rd
8547a3ef91568a575810b3409e1fb848 *man/getDescendants.Rd
966c39ab326c90e7c2db61eabfd6dec4 *man/getDomains.Rd
fa09610905fb3bbcd461e197d4b721e9 *man/getDoseForm.Rd
554ccc54dd107f35a5f2e0c9e4acbd48 *man/getDrugIngredientCodes.Rd
d15ece45e40ab830aa1a281513662671 *man/getICD10StandardCodes.Rd
d1d40bf10a268adef63a18c416768d53 *man/getMappings.Rd
c849ffc479772789d8e50c806e35e840 *man/getVocabVersion.Rd
cffee2ee6afc20367dd1ab94c4830a62 *man/getVocabularies.Rd
0ec24a256d9335c12e8e8a97653c1b1f *man/mockVocabRef.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
395f051dfbe8022d563f83614304e27d *man/restrictToCodesInUse.Rd
f040fc64daa93c62fcfe7d667555bda2 *man/sourceCodesInUse.Rd
de05087226a023ac4b75a24c6eb0c756 *man/summariseCodeUse.Rd
9892589f92bb1c98d3cf4bf6cbef0317 *man/summariseCohortCodeUse.Rd
54c6e8ade577cd9e23bcf07817edb66f *tests/testthat.R
aac7579c934fb5869d6543c147f83c1e *tests/testthat/test-achillesCodeUse.R
4162b438dbbec9d8a1affad60ea21a92 *tests/testthat/test-codesFrom.R
e63d642157cf5e3cfa7b809fb751cd25 *tests/testthat/test-codesInUse.R
82c53315121cf766f5dad1de483d1d26 *tests/testthat/test-compareCodelists.R
42d5d055d6bc34796cd9b1eb310c60ec *tests/testthat/test-dbms.R
54045ed67a08dee31ea7bcab85b3b194 *tests/testthat/test-drugCodes.R
ee21063d98bc06fd2270f4c606313445 *tests/testthat/test-findOrphanCodes.R
4e95b6941595c85b2d4136f8b1bde81a *tests/testthat/test-findUnmappedCodes.R
69283ddb84a5a048218e9d787e940633 *tests/testthat/test-getCandidateCodes.R
0c83f3cf1b471539390ff9745bf16452 *tests/testthat/test-getICD10StandardCodes.R
30ec212a699dc85414e85a96a59d5c15 *tests/testthat/test-getMappings.R
7fce1d32fea3f81d440b689b0013fa87 *tests/testthat/test-mockVocabRef.R
70dd21d2f8371e8f43a49665d37ac454 *tests/testthat/test-summariseCodeUse.R
0874fda4ab0dc8cf837221478adffebe *tests/testthat/test-synthea_sql_server.R
0491617d43c7960d615bbc84a573a7bc *tests/testthat/test-tidyWords.R
b05b059b5a719b0493973cfc623e30a4 *tests/testthat/test-vocabUtilities.R
cba2dee4e26e352a6f14c57bfbc29c54 *vignettes/a01_Introduction_to_CodelistGenerator.Rmd
6677ef746a1d97606a3bb53356474268 *vignettes/a02_Candidate_codes_OA.Rmd
399b7e7af8aca69c6f03170c07392452 *vignettes/a03_Options_for_CodelistGenerator.Rmd
89b1e3f3b46bc339cccd326161799095 *vignettes/a04_codelists_for_medications.Rmd
6bf616c1cddc5cd28cf632c988077967 *vignettes/mock_db_fig1.png
159a4342c012e030a46555a265fcbe4c *vignettes/mock_db_fig2.png
42c52193ccb4b159463dfe41bb8a2162 *vignettes/mock_db_fig3.png
740a71ce9db94f8d2e1d74c847969261 *vignettes/mock_db_fig4.png
70204dc86851a04f9fa684188ee26ae7 *vignettes/mock_db_fig5.png
4579ee87c573b7aef313213e9d24ade6 *vignettes/mock_db_fig6.png
86499ed6855abc7c932922a6abfa8ccf *vignettes/mock_db_fig7.png
21ceed6a0107371e6783321a2ba2a0b8 *vignettes/mock_db_fig8.png
