1545aaf88563564f327325d446c38d76 *DESCRIPTION
f4adcd899589cf7ad41f75ead0eee109 *NAMESPACE
cd0842761f0631891a4b11d30333be23 *NEWS
e64292e48c6f041aef21da3f87d4902e *NEWS.md
4fceee53b61fe96cad1aa981f5d7b82d *R/ChemoSpec-package.R
906c80217fe053582a5be916149e4a70 *R/DollarNames.R
f4906ce5a437ff7098db43e624a6dfc8 *R/MUD.R
58b813c1c8d7be3b6b1e77f1c3694300 *R/Spectra.R
e87f7cd90cae3e0afb01252751491068 *R/SrE.R
ec16e6fd711eb68a8ee09ce26a20faca *R/aovPCAloadings.R
9c6e4ce68d86668f53f0650a9bbf2a8d *R/aovPCAscores.R
4dcc42d53e1b0e45f2556d9e62cfed7b *R/aov_pcaSpectra.R
a679b81d2610315aa7f11a799c7f6087 *R/averageReplicates.R
f19b68fdb6033b5952f4bdc169529031 *R/avgFacLvls.R
b73c82c149629fa6f816591777bc7595 *R/baselineSpectra.R
06e9feb47a2eb4fdccfab6824aa357f1 *R/binData.R
eb39658ae63879e65f705b5f85a126b9 *R/binSpectra.R
b33fa8481b3891f69de3159d02b3182c *R/c_pcaSpectra.R
00d0e5d621040528eb920e1b3dbd7283 *R/check4GapsStub.R
1708ccc29991f29aac5cb65199c9cbad *R/chkGraphicsOptStub.R
fa2f0354f8ff9000e213fa61e35db8d0 *R/chkSpectraStub.R
97d3ad13245d072545891975c4c8c0e0 *R/cleanArgs.R
d3d36b0051a61bf1e84931dcc13f3770 *R/clupaSpectra.R
7f7e3e2d40851a1fa04ce6c812886282 *R/colorSymbolStub.R
6cfac040360d3094c6de6bc9b907838f *R/conColSchemeStub.R
e872b1b1f7dffd78854b16477f689bbf *R/coordProjCS.R
8501739f0c9588cae34e08b5f4425e8f *R/cv_pcaSpectra.R
f867e21188b660c6523e1af49b274b59 *R/documentation_functions.R
dbd2db3a8fb13c25b888201f7e2ef209 *R/evalClusters.R
c2b7a1e142cf44a34232519a9c66548a *R/files2SpectraObject.R
23ee62b22beeb18e83f37dd73a2e4592 *R/hcaScoresStub.R
32f7caf9a2c049b4aad4cc2080f1823e *R/hcaSpectra.R
e1547b5671dfd580ddd98440ec9ca0bd *R/hmapSpectra.R
845e5f6c9a2bdda65aacc5b74a6934db *R/hypTestScores.R
86cf4860c8d3c3a5479e1f94d54ef212 *R/irlba_pcaSpectra.R
675e442b35ae7f2a5759376b9315ad64 *R/isWholeNo.R
bc7ddf234357ab0242002ef8391b9d2c *R/labelExtremes3d.R
214adce2e747b8d2c4a1fc2297845e0b *R/makeEllipsoid.R
617dea2a363713577dcce1590c98f6c9 *R/matrix2SpectraObject.R
a19b2d24cf03a46f15d18a1a5ac74426 *R/mclust3dSpectra.R
95fb5161df83f050d30f1363fb308c78 *R/mclustSpectra.R
2cb17f27df723b58935cf73059dc61da *R/normSpectra.R
47fd5eddf1c837e95483e2428902405c *R/normVec.R
2b46f560f5f2e64ba98793b0ef65bba3 *R/onAttach.R
d8850fa749cfac7e5272f1122bab76bb *R/pcaDiag.R
7900cffaca66131c50a21f696bb25a09 *R/plot2Loadings.R
aed4f82ecae0febc2aebf70262fcd802 *R/plot3dScores.R
b64cc85e178bcd88863c92c1ed7cd317 *R/plotLoadings.R
6ef2de53cf6f7b8015369226c7828165 *R/plotScoresStub.R
e0fa3ccc141c836c9eb213ca49d1edb8 *R/plotScreeStub.R
b630d9c3bc6fe7d159b511d4011bb038 *R/plotSpectra.R
56ec8099d32d7ffdbb4692a2170f4b21 *R/plotSpectraDist.R
44f2b0f3502e41f69338c11ba763c8d6 *R/plotSpectraJS.R
a867f8e8a2d04e361c8c861ed4c6126c *R/plotly3d.R
1d472a7f060caf4f851c968d4be136ac *R/q2rPCA.R
95637200a9d958fb252becd41d4b92a6 *R/r2qPCA.R
ddfdc7f04bd1d51c9b0610ca1c3e67f0 *R/r_pcaSpectra.R
f3210f1baddbd598502d1627037142b9 *R/readJEOLascii.R
35842914d4cc1421334857fee8e95120 *R/removeFreqStub.R
33456d5c9d931ee56035e93a1e80ec3f *R/removeGroupStub.R
8f736487677a424d3c1df1ec0a6cad4b *R/removeSampleStub.R
2656041179a5d542a307aced982a6f99 *R/reviewAllSpectra.R
43701206c4fe1f1b9febeeb467d486d0 *R/rowDistStub.R
b407057ee567b68ad2ab2cf366e53870 *R/sPlotSpectra.R
5194c4f2474bc5f661ca05169aec9ec7 *R/s_pcaSpectra.R
676933e12c0cbded7d72f37a33c36aab *R/sampleDistStub.R
b1d26430347cb8f8de2314248e5e1173 *R/seXy.R
fde84d8f8d9922880853c3b4e9a233aa *R/sgfSpectra.R
803203f521569cdb0cdc9e9cd973daa0 *R/splitSpectraGroups.R
a21e3d76418553239e55d50b2b45c383 *R/sumGroupsStub.R
f5cc3c2a4e206bad85c04fe450a3570b *R/sumSpectraStub.R
4e11c171cd689e2988339be48c81f55c *R/surveySpectra.R
e88309d3ac8ea7decf867e0fa21a89f9 *R/surveySpectra2.R
58d8b34a343f6d9ef6d8bd5ce9498502 *R/updateGroupsStub.R
3ba066be3d858658fa21fc3020b98fc3 *README.md
7081115040021ac39d468f62305d7a3b *build/vignette.rds
0f95c58b6c5efad677c42bf3b6eceb7e *data/SrE.IR.RData
d52427f9190a9ba48d69c4b28aeb2331 *data/SrE.NMR.RData
4c125c04081e225a71d105714e0b986d *data/alignMUD.RData
e259c4d4ae91c6d4172f55ec1a92facd *data/datalist
312676b8aa493345c7c04a11d928b0cc *data/metMUD1.RData
fd3e83d7009fce6a634916457bcaec31 *data/metMUD2.RData
e5375ae51a091f34ca8ba37c788e8e65 *inst/doc/ChemoSpec.R
7fb955b7c65a4e05585d4168d6f65df8 *inst/doc/ChemoSpec.Rmd
ae72a761fa58e6d9eac7daee8296e92f *inst/doc/ChemoSpec.pdf
ddc0b80fa6dc58028d734fff5bb83e88 *inst/extdata/PCRF.jdx
84b8bcbb4939380ceb8d0468f9f9d8b7 *inst/extdata/pS.css
481b8cf0d5a29beb52ee0772f929062b *inst/extdata/pS_brushNguides.js
1f0bf1f492f5365ae1713375087a82be *inst/extdata/pS_controls.js
7cc2fca9bd06669d2c4881efea56586b *inst/extdata/pS_globals.js
1094decdb98b97046aae78ec82027099 *inst/extdata/pS_main.js
8cbd4030645015cdca1681c5a57131ee *inst/extdata/pS_spectra.js
8338cc5c3194fc6da3cdafa8738eec8d *inst/extdata/plotSpectraJS.html
ddc0b80fa6dc58028d734fff5bb83e88 *inst/tinytest/PCRF.jdx
2382dea8bb7b1181debe0a73264b6585 *inst/tinytest/mydata.RData
d48ccb7312235e86d0ba295bf33099db *inst/tinytest/test-cleanArgs.R
20ed3eff718baaec12f3a131ee68eb23 *inst/tinytest/test-evalClusters.R
fceff63fb524c15594274fb2b704838c *inst/tinytest/test-files2SpectraObject_JDX.R
2ecf5f70a28fa3b070df80f4cd452587 *man/ChemoSpec-package.Rd
598e11f638f575f547abc9511e8d7b88 *man/Spectra.Rd
32d2c6b91ea5c46261d4a438b7425302 *man/SrE.IR.Rd
554cd457d674369ca54a28c6239a18e9 *man/aovPCAloadings.Rd
55c1e8e6805e58d2492c351c7d8668f5 *man/aovPCAscores.Rd
9ae37c249bc5f46d2b3e6c5c6b558d8e *man/aov_pcaSpectra.Rd
a8000aa51088daf18397b863de5db5cc *man/averageReplicates.Rd
0aaf12b17b66629ec12d5b1b0099e90c *man/baselineSpectra.Rd
399c661c03148348936296e2c85b6418 *man/binSpectra.Rd
834f9f78e91543aac1e47fd53302ab50 *man/c_pcaSpectra.Rd
833a5a98e831dab36f92361780ecedca *man/check4Gaps.Rd
4a9216e7eeef00791987b7b773daa586 *man/chkGraphicsOpt.Rd
7d53d3331beece03e719600b3d3e9778 *man/chkSpectra.Rd
bb4c37e0a62b7e7c78478f4276d20932 *man/clupaSpectra.Rd
6e325e12f83da570dc73bbab6ca0e73a *man/colorSymbol.Rd
93227e00ae487011ba42f3afa7cc5b68 *man/conColScheme.Rd
173f5f39169f16596c7be208302b2b7a *man/cv_pcaSpectra.Rd
dc902313667b34ce58bf4d9485a6f9b2 *man/evalClusters.Rd
e7d38dc06197313f66eadd298924f71c *man/figures/Banner.png
00c933b9d342ea97e22d2aecf715bb04 *man/files2SpectraObject.Rd
6a71b17958d03e5283c202d1ddd06f83 *man/hcaScores.Rd
55066ca5e3bd748aa00ba5f1faf35d49 *man/hcaSpectra.Rd
8b998aecda6d741166b0f69948318e9d *man/hmapSpectra.Rd
fbaf2a8ea74a55a690fe7600d61e6de2 *man/hypTestScores.Rd
81557af3b337f265cd53c237da46384c *man/irlba_pcaSpectra.Rd
16a2572beab919d33f1a741220a26cb9 *man/mclust3dSpectra.Rd
c3297b73c26e15243fea5a0f48807296 *man/mclustSpectra.Rd
cba10e1d6342584b1622e8f51c94e20c *man/metMUD1.Rd
0f93637ae7a7b957abcae046959318b2 *man/normSpectra.Rd
9873a83a875637257d682274ea9bd824 *man/pcaDiag.Rd
e25635dc23137ed837eee12f3dfce3de *man/plot2Loadings.Rd
ea8d1c25cd013ca689b7e113688df8b1 *man/plot3dScores.Rd
2fe3c7b0c8a45a6d23b81f895a972edd *man/plotLoadings.Rd
02ec32772a65242f46f7f032a59fc7a9 *man/plotScores.Rd
3b9e3a0efd6adfa0f1001964afeb4d25 *man/plotScree.Rd
c6d3e54abe345641ae8f09829f9137e9 *man/plotSpectra.Rd
d3bc55072eea6362f769a0063f88babe *man/plotSpectraDist.Rd
fd1eedae4d20aab0e03e77e2070c5c6c *man/plotSpectraJS.Rd
6cf4079b4bc5376abf066702b99a0eb0 *man/r_pcaSpectra.Rd
204d56fd59d70afeef2b2e241fcae97e *man/removeFreq.Rd
c8e3d6bdcc048e0411e8ea5afe46ed90 *man/removeGroup.Rd
f4233331b717e0b56b4e165ac1eca9b8 *man/removeSample.Rd
bd8c4dd39ecac4bad417cd292c97819f *man/reviewAllSpectra.Rd
955417fcf23e0a0dece394350be021f7 *man/rowDist.Rd
e2d1e3e02026166e53a5d3e62a5cac03 *man/sPlotSpectra.Rd
fadf1eaa09299a31af5ad990731b273f *man/s_pcaSpectra.Rd
7240b208b8b2fe6d8afad0e333b188bd *man/sampleDist.Rd
d8e667a49c1f294be245040e48fa4c9f *man/sgfSpectra.Rd
83681f1a8493cc7fc780fb280971d983 *man/splitSpectraGroups.Rd
a9fdd7765f04485e1173750d0b4d3820 *man/sumGroups.Rd
799194b76e60cc0a1f9eaea36e0b6e46 *man/sumSpectra.Rd
ffd8f1eb2632a4be6566010682cf481c *man/surveySpectra.Rd
367c5a7013912fd2e782ce3f64b54c2c *man/updateGroups.Rd
abd138a207823e7d0c9ff3098eddde69 *tests/tinytest.R
7fb955b7c65a4e05585d4168d6f65df8 *vignettes/ChemoSpec.Rmd
93159ca5633c5147f8f02950fb1e7617 *vignettes/MetabPreProcess.png
01e45dd2a50488dee54b553602a7d1a1 *vignettes/aovPCA1.png
cc9b9c0e4fa39f94aa3a8007a816a367 *vignettes/aovPCA2.png
ac6f85e3d7009fbb16cdc6cac871d21b *vignettes/chemometrics.bib
